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docker-image.yml
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name: Docker Image CI
on:
push:
branches: [ develop ]
pull_request:
branches: [ develop ]
jobs:
build_and_test:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v2
- uses: sergeysova/jq-action@v2
- name: Build Ades
run: docker build . --tag ades:latest --no-cache
- name: Run Ades
run: docker-compose up -d
- name: "Test1: List Services"
run: curl http://localhost/ogc-api/processes | jq
- name: "Test2: Deploy dnbr service"
run: |
curl --request POST 'http://localhost/ogc-api/processes/' \
--header 'Content-Type: application/cwl' \
--data-raw '$graph:
- class: Workflow
label: dNBR - produce the delta normalized difference between NIR and SWIR 22 over a pair of stac items
doc: dNBR - produce the delta normalized difference between NIR and SWIR 22 over a pair of stac items
id: dnbr
requirements:
- class: ScatterFeatureRequirement
- class: SubworkflowFeatureRequirement
- class: MultipleInputFeatureRequirement
inputs:
pre_stac_item:
doc: Pre-event Sentinel-2 item
type: string
post_stac_item:
doc: Post-event Sentinel-2 item
type: string
aoi:
doc: area of interest as a bounding box
type: string
bands:
type: string[]
default: ["B8A", "B12", "SCL"]
outputs:
stac:
outputSource:
- node_stac/stac
type: Directory
steps:
node_nbr:
run: "#nbr_wf"
in:
stac_item: [pre_stac_item, post_stac_item]
aoi: aoi
out:
- nbr
scatter: stac_item
scatterMethod: dotproduct
node_dnbr:
run: "#dnbr_clt"
in:
tifs:
source: node_nbr/nbr
out:
- dnbr
node_cog:
run: "#gdal_cog_clt"
in:
tif:
source: [node_dnbr/dnbr]
out:
- cog_tif
node_stac:
run: "#stacme_clt"
in:
tif:
source: [node_cog/cog_tif]
pre_stac_item: pre_stac_item
post_stac_item: post_stac_item
out:
- stac
- class: Workflow
label: NBR - produce the normalized difference between NIR and SWIR 22 and convert to COG
doc: NBR - produce the normalized difference between NIR and SWIR 22 and convert to COG
id: nbr_wf
requirements:
- class: ScatterFeatureRequirement
- class: SubworkflowFeatureRequirement
inputs:
stac_item:
doc: Sentinel-2 item
type: string
aoi:
doc: area of interest as a bounding box
type: string
bands:
type: string[]
default: ["B8A", "B12", "SCL"]
outputs:
nbr:
outputSource:
- node_cog/cog_tif
type: File
steps:
node_stac:
run: "#asset_single_clt"
in:
stac_item: stac_item
asset: bands
out:
- asset_href
scatter: asset
scatterMethod: dotproduct
node_subset:
run: "#translate_clt"
in:
asset:
source: node_stac/asset_href
bbox: aoi
out:
- tifs
scatter: asset
scatterMethod: dotproduct
node_nbr:
run: "#band_math_clt"
in:
stac_item: stac_item
tifs:
source: [node_subset/tifs]
out:
- nbr_tif
node_cog:
run: "#gdal_cog_clt"
in:
tif:
source: [node_nbr/nbr_tif]
out:
- cog_tif
- class: CommandLineTool
id: asset_single_clt
requirements:
DockerRequirement:
dockerPull: docker.io/curlimages/curl:latest
ShellCommandRequirement: {}
InlineJavascriptRequirement: {}
baseCommand: [curl, -s]
arguments:
- $( inputs.stac_item )
stdout: message
inputs:
stac_item:
type: string
asset:
type: string
outputs:
asset_href:
type: Any
outputBinding:
glob: message
loadContents: true
outputEval: |-
${ var assets = JSON.parse(self[0].contents).assets;
return assets[inputs.asset].href; }
- class: CommandLineTool
id: translate_clt
requirements:
InlineJavascriptRequirement: {}
DockerRequirement:
dockerPull: docker.io/osgeo/gdal
baseCommand: gdal_translate
arguments:
- -projwin
- valueFrom: ${ return inputs.bbox.split(",")[0]; }
- valueFrom: ${ return inputs.bbox.split(",")[3]; }
- valueFrom: ${ return inputs.bbox.split(",")[2]; }
- valueFrom: ${ return inputs.bbox.split(",")[1]; }
- -projwin_srs
- valueFrom: ${ return inputs.epsg; }
- valueFrom: "${ if (inputs.asset.startsWith(\"http\")) {\n\n return \"/vsicurl/\" + inputs.asset; \n\n } else { \n\n return inputs.asset;\n\n } \n}\n"
- valueFrom: ${ return inputs.asset.split("/").slice(-1)[0]; }
inputs:
asset:
type: string
bbox:
type: string
epsg:
type: string
default: "EPSG:4326"
outputs:
tifs:
outputBinding:
glob: '\''*.tif'\''
type: File
- class: CommandLineTool
id: band_math_clt
requirements:
InlineJavascriptRequirement: {}
DockerRequirement:
dockerPull: docker.io/terradue/otb-7.2.0
baseCommand: otbcli_BandMathX
arguments:
- -out
- valueFrom: ${ return inputs.stac_item.split("/").slice(-1)[0] + ".tif"; }
- -exp
- '\''(im3b1 == 8 or im3b1 == 9 or im3b1 == 0 or im3b1 == 1 or im3b1 == 2 or im3b1 == 10 or im3b1 == 11) ? -2 : (im1b1 - im2b1) / (im1b1 + im2b1)'\''
inputs:
tifs:
type: File[]
inputBinding:
position: 5
prefix: -il
separate: true
stac_item:
type: string
outputs:
nbr_tif:
outputBinding:
glob: "*.tif"
type: File
- class: CommandLineTool
id: gdal_cog_clt
requirements:
InlineJavascriptRequirement: {}
DockerRequirement:
dockerPull: osgeo/gdal
baseCommand: gdal_translate
arguments:
- -co
- COMPRESS=DEFLATE
- -of
- COG
- valueFrom: ${ return inputs.tif }
- valueFrom: ${ return inputs.tif.basename.replace(".tif", "") + '\''_cog.tif'\''; }
inputs:
tif:
type: File
outputs:
cog_tif:
outputBinding:
glob: '\''*_cog.tif'\''
type: File
- class: CommandLineTool
id: dnbr_clt
requirements:
InlineJavascriptRequirement: {}
DockerRequirement:
dockerPull: docker.io/terradue/otb-7.2.0
baseCommand: otbcli_BandMathX
arguments:
- -out
- dnbr.tif
- -exp
- '\''(im1b1 == -2 or im2b1 == -2 ) ? -20000 : (im2b1 - im1b1) * 10000'\''
inputs:
tifs:
type: File[]
inputBinding:
position: 5
prefix: -il
separate: true
outputs:
dnbr:
outputBinding:
glob: "dnbr.tif"
type: File
- class: CommandLineTool
id: stacme_clt
requirements:
InlineJavascriptRequirement: {}
DockerRequirement:
dockerPull: registry.gitlab.com/app-packages/terradue/dnbr-sentinel-2-cog/stacme:0.1.0-develop
baseCommand: stacme
arguments: []
inputs:
tif:
type: File
inputBinding:
position: 1
pre_stac_item:
type: string
inputBinding:
position: 2
post_stac_item:
type: string
inputBinding:
position: 3
outputs:
stac:
outputBinding:
glob: "."
type: Directory
cwlVersion: v1.0
$namespaces:
s: https://schema.org/
s:softwareVersion: 0.1.0
schemas:
- http://schema.org/version/9.0/schemaorg-current-http.rdf' | jq