This is a changelog for all minor versions of dexom-python before version 1.0.
Contrary to standard python versioning rules, the different 0.x versions are not fully backwards compatible.
Standard python versioning will be applied starting with the first stable release, version 1.0.
This changelog is not exhaustive - it is used to keep track of the main changes.
In addition to the changes listed here, all versions incorporate bugfixes, new testcases, updated documentation, and other minor modifications.
Implement snakemake workflow
Export fluxes in addition to enumeration solutions
Major bugfixes in gpr_rules functions
expand and refactor functions for cluster usage
add DEFAULT_VALUES dictionary for default function parameters
add main functions to commandline scripts for testing purposes
rework cluster functions
remove prepare_expr_split_gen_list function from gpr_rules module
generalize apply_gpr function to work for all (currently known) types of GPR-rules
resolve import problems and unify import behavior by renaming modules
expand documentation to cover more functions
create create_enum_variables function
modify output behavior - solutions are no longer saved within the enumeration functions
correct gpr_rules behavior
create gpr_rules.py
add new variable implementation for imat
create read_model, check_model_options, Fischer_groups functions
remove get_binary_sol, get_obj_value_from_binary functions
add documentation
add unit tests