Skip to content

Latest commit

 

History

History
19 lines (13 loc) · 693 Bytes

lucia.md

File metadata and controls

19 lines (13 loc) · 693 Bytes

Lucia's collab paper notebook

February 23, 2022

List of things that we did today:

  • We started the lab notebooks using markdown
  • We solved Randy's aligment issue
  • Kiana, Lucia and Luna got the same error with the blast database, investigate!

Updating Primates phylogeny

I am working on on updating a phylogeny of the order Primates I ran the following command

physcraper_run.py --study_id pg_2407 --tree_id tree5076 --search_taxon ott:913935 --alignment /branchinecta/jbazanwilliamson/M585.nex --aln_schema nexus -
-bootstrap_reps 100 -db /branchinecta/shared/local_blast_db --output /branchinecta/shared/collab-paper/linked_dir/LUCIABW-PRIMATES-2022-02-23