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Doesn't handle .nii file #13

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chrisk1 opened this issue Jun 9, 2016 · 1 comment
Closed

Doesn't handle .nii file #13

chrisk1 opened this issue Jun 9, 2016 · 1 comment

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@chrisk1
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chrisk1 commented Jun 9, 2016

Running the segmentation on an uncompressed T2_brain.nii file gives the following error:

Cifstream::Open: Cannot open file T2/T2_brain.nii.gz
Error: convert-image command returned non-zero exit status 1

Converting the .nii to a compressed .nii.gz format works normally. An unimportant error check to add in perhaps!
@amakropoulos
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Thank you for spotting this :) !
This is now fixed in #21

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@chrisk1 @amakropoulos