From 21341dbebd7adb074317df8d444d7920332b1a1b Mon Sep 17 00:00:00 2001 From: Ward Weistra Date: Tue, 9 May 2017 14:24:05 +0200 Subject: [PATCH] Removing output and including studies and patients call --- EXERCISE 3 - pathways.ipynb | 10633 +----------------- EXERCISE TranSMART REST API V2 (2017).ipynb | 654 +- 2 files changed, 119 insertions(+), 11168 deletions(-) diff --git a/EXERCISE 3 - pathways.ipynb b/EXERCISE 3 - pathways.ipynb index 06f824a..7932876 100644 --- a/EXERCISE 3 - pathways.ipynb +++ b/EXERCISE 3 - pathways.ipynb @@ -27,38 +27,19 @@ }, { "cell_type": "code", - "execution_count": 1, + "execution_count": null, "metadata": { "collapsed": false, "deletable": true, "editable": true }, - "outputs": [ - { - "name": "stdout", - "output_type": "stream", - "text": [ - "Username:admin\n", - "Password:········\n" - ] - }, - { - "data": { - "text/plain": [ - "'SUCCESS'" - ] - }, - "execution_count": 1, - "metadata": {}, - "output_type": "execute_result" - } - ], + "outputs": [], "source": [ "import getpass\n", "from transmart_api import TransmartApi\n", "\n", "api = TransmartApi(\n", - " host = 'http://postgres-demo.transmartfoundation.org/transmart',\n", + " host = 'http://postgres-test.transmartfoundation.org/transmart',\n", " user = input('Username:'),\n", " password = getpass.getpass('Password:'),\n", " apiversion = 1)\n", @@ -82,7 +63,7 @@ }, { "cell_type": "code", - "execution_count": 2, + "execution_count": null, "metadata": { "collapsed": true, "deletable": true, @@ -91,6 +72,7 @@ "outputs": [], "source": [ "import pandas\n", + "from pandas.io.json import json_normalize\n", "\n", "pandas.set_option('max_colwidth', 1000)\n", "pandas.set_option(\"display.max_rows\",100)" @@ -108,7 +90,19 @@ }, { "cell_type": "code", - "execution_count": 2, + "execution_count": null, + "metadata": { + "collapsed": false + }, + "outputs": [], + "source": [ + "studies = api.get_studies()\n", + "json_normalize(studies['studies'])" + ] + }, + { + "cell_type": "code", + "execution_count": null, "metadata": { "collapsed": false, "deletable": true, @@ -117,8 +111,6 @@ }, "outputs": [], "source": [ - "from pandas.io.json import json_normalize\n", - "\n", "study_id = 'GSE8581'\n", "obs = api.get_observations(study = study_id)\n", "obs_df1 = json_normalize(obs)" @@ -126,1217 +118,13 @@ }, { "cell_type": "code", - "execution_count": 3, + "execution_count": null, "metadata": { "collapsed": false, "deletable": true, "editable": true }, - "outputs": [ - { - "data": { - "text/html": [ - "
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labelsubject.agesubject.birthDatesubject.deathDatesubject.idsubject.inTrialIdsubject.maritalStatussubject.racesubject.religionsubject.sexsubject.trialvalue
0\\Public Studies\\COPD_Bhattacharya_GSE8581\\Biom...65NoneNone1213GSE8581GSM210006NoneAfro AmericanNoneFEMALEGSE8581E
1\\Public Studies\\COPD_Bhattacharya_GSE8581\\Endp...65NoneNone1213GSE8581GSM210006NoneAfro AmericanNoneFEMALEGSE8581non-small cell adenocarcinoma
2\\Public Studies\\COPD_Bhattacharya_GSE8581\\Endp...65NoneNone1213GSE8581GSM210006NoneAfro AmericanNoneFEMALEGSE85811.41
3\\Public Studies\\COPD_Bhattacharya_GSE8581\\Endp...65NoneNone1213GSE8581GSM210006NoneAfro AmericanNoneFEMALEGSE858151
4\\Public Studies\\COPD_Bhattacharya_GSE8581\\Subj...65NoneNone1213GSE8581GSM210006NoneAfro AmericanNoneFEMALEGSE858165
5\\Public Studies\\COPD_Bhattacharya_GSE8581\\Subj...65NoneNone1213GSE8581GSM210006NoneAfro AmericanNoneFEMALEGSE858166
6\\Public Studies\\COPD_Bhattacharya_GSE8581\\Subj...65NoneNone1213GSE8581GSM210006NoneAfro AmericanNoneFEMALEGSE8581chronic obstructive pulmonary disease
7\\Public Studies\\COPD_Bhattacharya_GSE8581\\Subj...65NoneNone1213GSE8581GSM210006NoneAfro AmericanNoneFEMALEGSE8581Homo sapiens
8\\Public Studies\\COPD_Bhattacharya_GSE8581\\Subj...65NoneNone1213GSE8581GSM210006NoneAfro AmericanNoneFEMALEGSE8581Afro American
9\\Public Studies\\COPD_Bhattacharya_GSE8581\\Subj...65NoneNone1213GSE8581GSM210006NoneAfro AmericanNoneFEMALEGSE8581female
10\\Public Studies\\COPD_Bhattacharya_GSE8581\\Biom...77NoneNone1214GSE8581GSM212788NoneCaucasianNoneFEMALEGSE8581E
11\\Public Studies\\COPD_Bhattacharya_GSE8581\\Endp...77NoneNone1214GSE8581GSM212788NoneCaucasianNoneFEMALEGSE8581non-small cell squamous cell carcinoma
12\\Public Studies\\COPD_Bhattacharya_GSE8581\\Endp...77NoneNone1214GSE8581GSM212788NoneCaucasianNoneFEMALEGSE85811.29
13\\Public Studies\\COPD_Bhattacharya_GSE8581\\Endp...77NoneNone1214GSE8581GSM212788NoneCaucasianNoneFEMALEGSE858153
14\\Public Studies\\COPD_Bhattacharya_GSE8581\\Subj...77NoneNone1214GSE8581GSM212788NoneCaucasianNoneFEMALEGSE858177
15\\Public Studies\\COPD_Bhattacharya_GSE8581\\Subj...77NoneNone1214GSE8581GSM212788NoneCaucasianNoneFEMALEGSE858167
16\\Public Studies\\COPD_Bhattacharya_GSE8581\\Subj...77NoneNone1214GSE8581GSM212788NoneCaucasianNoneFEMALEGSE8581chronic obstructive pulmonary disease
17\\Public Studies\\COPD_Bhattacharya_GSE8581\\Subj...77NoneNone1214GSE8581GSM212788NoneCaucasianNoneFEMALEGSE8581Homo sapiens
18\\Public Studies\\COPD_Bhattacharya_GSE8581\\Subj...77NoneNone1214GSE8581GSM212788NoneCaucasianNoneFEMALEGSE8581Caucasian
19\\Public Studies\\COPD_Bhattacharya_GSE8581\\Subj...77NoneNone1214GSE8581GSM212788NoneCaucasianNoneFEMALEGSE8581female
20\\Public Studies\\COPD_Bhattacharya_GSE8581\\Biom...55NoneNone1215GSE8581GSM212067NoneCaucasianNoneMALEGSE8581E
21\\Public Studies\\COPD_Bhattacharya_GSE8581\\Endp...55NoneNone1215GSE8581GSM212067NoneCaucasianNoneMALEGSE8581inflammation
22\\Public Studies\\COPD_Bhattacharya_GSE8581\\Endp...55NoneNone1215GSE8581GSM212067NoneCaucasianNoneMALEGSE85814.04
23\\Public Studies\\COPD_Bhattacharya_GSE8581\\Endp...55NoneNone1215GSE8581GSM212067NoneCaucasianNoneMALEGSE858179
24\\Public Studies\\COPD_Bhattacharya_GSE8581\\Subj...55NoneNone1215GSE8581GSM212067NoneCaucasianNoneMALEGSE858155
25\\Public Studies\\COPD_Bhattacharya_GSE8581\\Subj...55NoneNone1215GSE8581GSM212067NoneCaucasianNoneMALEGSE858169
26\\Public Studies\\COPD_Bhattacharya_GSE8581\\Subj...55NoneNone1215GSE8581GSM212067NoneCaucasianNoneMALEGSE8581control
27\\Public Studies\\COPD_Bhattacharya_GSE8581\\Subj...55NoneNone1215GSE8581GSM212067NoneCaucasianNoneMALEGSE8581Homo sapiens
28\\Public Studies\\COPD_Bhattacharya_GSE8581\\Subj...55NoneNone1215GSE8581GSM212067NoneCaucasianNoneMALEGSE8581Caucasian
29\\Public Studies\\COPD_Bhattacharya_GSE8581\\Subj...55NoneNone1215GSE8581GSM212067NoneCaucasianNoneMALEGSE8581male
.......................................
550\\Public Studies\\COPD_Bhattacharya_GSE8581\\Biom...64NoneNone1268GSE8581GSM212854NoneCaucasianNoneMALEGSE8581E
551\\Public Studies\\COPD_Bhattacharya_GSE8581\\Endp...64NoneNone1268GSE8581GSM212854NoneCaucasianNoneMALEGSE8581non-small cell adenocarcinoma
552\\Public Studies\\COPD_Bhattacharya_GSE8581\\Endp...64NoneNone1268GSE8581GSM212854NoneCaucasianNoneMALEGSE85812.26
553\\Public Studies\\COPD_Bhattacharya_GSE8581\\Endp...64NoneNone1268GSE8581GSM212854NoneCaucasianNoneMALEGSE858183
554\\Public Studies\\COPD_Bhattacharya_GSE8581\\Subj...64NoneNone1268GSE8581GSM212854NoneCaucasianNoneMALEGSE858164
555\\Public Studies\\COPD_Bhattacharya_GSE8581\\Subj...64NoneNone1268GSE8581GSM212854NoneCaucasianNoneMALEGSE858166
556\\Public Studies\\COPD_Bhattacharya_GSE8581\\Subj...64NoneNone1268GSE8581GSM212854NoneCaucasianNoneMALEGSE8581not specified
557\\Public Studies\\COPD_Bhattacharya_GSE8581\\Subj...64NoneNone1268GSE8581GSM212854NoneCaucasianNoneMALEGSE8581Homo sapiens
558\\Public Studies\\COPD_Bhattacharya_GSE8581\\Subj...64NoneNone1268GSE8581GSM212854NoneCaucasianNoneMALEGSE8581Caucasian
559\\Public Studies\\COPD_Bhattacharya_GSE8581\\Subj...64NoneNone1268GSE8581GSM212854NoneCaucasianNoneMALEGSE8581male
560\\Public Studies\\COPD_Bhattacharya_GSE8581\\Biom...65NoneNone1269GSE8581GSM210188NoneCaucasianNoneFEMALEGSE8581E
561\\Public Studies\\COPD_Bhattacharya_GSE8581\\Endp...65NoneNone1269GSE8581GSM210188NoneCaucasianNoneFEMALEGSE8581metastatic non-small cell adenocarcinoma
562\\Public Studies\\COPD_Bhattacharya_GSE8581\\Endp...65NoneNone1269GSE8581GSM210188NoneCaucasianNoneFEMALEGSE85811.2
563\\Public Studies\\COPD_Bhattacharya_GSE8581\\Endp...65NoneNone1269GSE8581GSM210188NoneCaucasianNoneFEMALEGSE858172
564\\Public Studies\\COPD_Bhattacharya_GSE8581\\Subj...65NoneNone1269GSE8581GSM210188NoneCaucasianNoneFEMALEGSE858165
565\\Public Studies\\COPD_Bhattacharya_GSE8581\\Subj...65NoneNone1269GSE8581GSM210188NoneCaucasianNoneFEMALEGSE858163
566\\Public Studies\\COPD_Bhattacharya_GSE8581\\Subj...65NoneNone1269GSE8581GSM210188NoneCaucasianNoneFEMALEGSE8581not specified
567\\Public Studies\\COPD_Bhattacharya_GSE8581\\Subj...65NoneNone1269GSE8581GSM210188NoneCaucasianNoneFEMALEGSE8581Homo sapiens
568\\Public Studies\\COPD_Bhattacharya_GSE8581\\Subj...65NoneNone1269GSE8581GSM210188NoneCaucasianNoneFEMALEGSE8581Caucasian
569\\Public Studies\\COPD_Bhattacharya_GSE8581\\Subj...65NoneNone1269GSE8581GSM210188NoneCaucasianNoneFEMALEGSE8581female
570\\Public Studies\\COPD_Bhattacharya_GSE8581\\Biom...52NoneNone1270GSE8581GSM212810NoneCaucasianNoneFEMALEGSE8581E
571\\Public Studies\\COPD_Bhattacharya_GSE8581\\Endp...52NoneNone1270GSE8581GSM212810NoneCaucasianNoneFEMALEGSE8581non-small cell squamous cell carcinoma
572\\Public Studies\\COPD_Bhattacharya_GSE8581\\Endp...52NoneNone1270GSE8581GSM212810NoneCaucasianNoneFEMALEGSE85810.88
573\\Public Studies\\COPD_Bhattacharya_GSE8581\\Endp...52NoneNone1270GSE8581GSM212810NoneCaucasianNoneFEMALEGSE858152
574\\Public Studies\\COPD_Bhattacharya_GSE8581\\Subj...52NoneNone1270GSE8581GSM212810NoneCaucasianNoneFEMALEGSE858152
575\\Public Studies\\COPD_Bhattacharya_GSE8581\\Subj...52NoneNone1270GSE8581GSM212810NoneCaucasianNoneFEMALEGSE858166
576\\Public Studies\\COPD_Bhattacharya_GSE8581\\Subj...52NoneNone1270GSE8581GSM212810NoneCaucasianNoneFEMALEGSE8581chronic obstructive pulmonary disease
577\\Public Studies\\COPD_Bhattacharya_GSE8581\\Subj...52NoneNone1270GSE8581GSM212810NoneCaucasianNoneFEMALEGSE8581Homo sapiens
578\\Public Studies\\COPD_Bhattacharya_GSE8581\\Subj...52NoneNone1270GSE8581GSM212810NoneCaucasianNoneFEMALEGSE8581Caucasian
579\\Public Studies\\COPD_Bhattacharya_GSE8581\\Subj...52NoneNone1270GSE8581GSM212810NoneCaucasianNoneFEMALEGSE8581female
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580 rows × 12 columns

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" - ], - "text/plain": [ - " label subject.age \\\n", - "0 \\Public Studies\\COPD_Bhattacharya_GSE8581\\Biom... 65 \n", - "1 \\Public Studies\\COPD_Bhattacharya_GSE8581\\Endp... 65 \n", - "2 \\Public Studies\\COPD_Bhattacharya_GSE8581\\Endp... 65 \n", - "3 \\Public Studies\\COPD_Bhattacharya_GSE8581\\Endp... 65 \n", - "4 \\Public Studies\\COPD_Bhattacharya_GSE8581\\Subj... 65 \n", - "5 \\Public Studies\\COPD_Bhattacharya_GSE8581\\Subj... 65 \n", - "6 \\Public Studies\\COPD_Bhattacharya_GSE8581\\Subj... 65 \n", - "7 \\Public Studies\\COPD_Bhattacharya_GSE8581\\Subj... 65 \n", - "8 \\Public Studies\\COPD_Bhattacharya_GSE8581\\Subj... 65 \n", - "9 \\Public Studies\\COPD_Bhattacharya_GSE8581\\Subj... 65 \n", - "10 \\Public Studies\\COPD_Bhattacharya_GSE8581\\Biom... 77 \n", - "11 \\Public Studies\\COPD_Bhattacharya_GSE8581\\Endp... 77 \n", - "12 \\Public Studies\\COPD_Bhattacharya_GSE8581\\Endp... 77 \n", - "13 \\Public Studies\\COPD_Bhattacharya_GSE8581\\Endp... 77 \n", - "14 \\Public Studies\\COPD_Bhattacharya_GSE8581\\Subj... 77 \n", - "15 \\Public Studies\\COPD_Bhattacharya_GSE8581\\Subj... 77 \n", - "16 \\Public Studies\\COPD_Bhattacharya_GSE8581\\Subj... 77 \n", - "17 \\Public Studies\\COPD_Bhattacharya_GSE8581\\Subj... 77 \n", - "18 \\Public Studies\\COPD_Bhattacharya_GSE8581\\Subj... 77 \n", - "19 \\Public Studies\\COPD_Bhattacharya_GSE8581\\Subj... 77 \n", - "20 \\Public Studies\\COPD_Bhattacharya_GSE8581\\Biom... 55 \n", - "21 \\Public Studies\\COPD_Bhattacharya_GSE8581\\Endp... 55 \n", - "22 \\Public Studies\\COPD_Bhattacharya_GSE8581\\Endp... 55 \n", - "23 \\Public Studies\\COPD_Bhattacharya_GSE8581\\Endp... 55 \n", - "24 \\Public Studies\\COPD_Bhattacharya_GSE8581\\Subj... 55 \n", - "25 \\Public Studies\\COPD_Bhattacharya_GSE8581\\Subj... 55 \n", - "26 \\Public Studies\\COPD_Bhattacharya_GSE8581\\Subj... 55 \n", - "27 \\Public Studies\\COPD_Bhattacharya_GSE8581\\Subj... 55 \n", - "28 \\Public Studies\\COPD_Bhattacharya_GSE8581\\Subj... 55 \n", - "29 \\Public Studies\\COPD_Bhattacharya_GSE8581\\Subj... 55 \n", - ".. ... ... \n", - "550 \\Public Studies\\COPD_Bhattacharya_GSE8581\\Biom... 64 \n", - "551 \\Public Studies\\COPD_Bhattacharya_GSE8581\\Endp... 64 \n", - "552 \\Public Studies\\COPD_Bhattacharya_GSE8581\\Endp... 64 \n", - "553 \\Public Studies\\COPD_Bhattacharya_GSE8581\\Endp... 64 \n", - "554 \\Public Studies\\COPD_Bhattacharya_GSE8581\\Subj... 64 \n", - "555 \\Public Studies\\COPD_Bhattacharya_GSE8581\\Subj... 64 \n", - "556 \\Public Studies\\COPD_Bhattacharya_GSE8581\\Subj... 64 \n", - "557 \\Public Studies\\COPD_Bhattacharya_GSE8581\\Subj... 64 \n", - "558 \\Public Studies\\COPD_Bhattacharya_GSE8581\\Subj... 64 \n", - "559 \\Public Studies\\COPD_Bhattacharya_GSE8581\\Subj... 64 \n", - "560 \\Public Studies\\COPD_Bhattacharya_GSE8581\\Biom... 65 \n", - "561 \\Public Studies\\COPD_Bhattacharya_GSE8581\\Endp... 65 \n", - "562 \\Public Studies\\COPD_Bhattacharya_GSE8581\\Endp... 65 \n", - "563 \\Public Studies\\COPD_Bhattacharya_GSE8581\\Endp... 65 \n", - "564 \\Public Studies\\COPD_Bhattacharya_GSE8581\\Subj... 65 \n", - "565 \\Public Studies\\COPD_Bhattacharya_GSE8581\\Subj... 65 \n", - "566 \\Public Studies\\COPD_Bhattacharya_GSE8581\\Subj... 65 \n", - "567 \\Public Studies\\COPD_Bhattacharya_GSE8581\\Subj... 65 \n", - "568 \\Public Studies\\COPD_Bhattacharya_GSE8581\\Subj... 65 \n", - "569 \\Public Studies\\COPD_Bhattacharya_GSE8581\\Subj... 65 \n", - "570 \\Public Studies\\COPD_Bhattacharya_GSE8581\\Biom... 52 \n", - "571 \\Public Studies\\COPD_Bhattacharya_GSE8581\\Endp... 52 \n", - "572 \\Public Studies\\COPD_Bhattacharya_GSE8581\\Endp... 52 \n", - "573 \\Public Studies\\COPD_Bhattacharya_GSE8581\\Endp... 52 \n", - "574 \\Public Studies\\COPD_Bhattacharya_GSE8581\\Subj... 52 \n", - "575 \\Public Studies\\COPD_Bhattacharya_GSE8581\\Subj... 52 \n", - "576 \\Public Studies\\COPD_Bhattacharya_GSE8581\\Subj... 52 \n", - "577 \\Public Studies\\COPD_Bhattacharya_GSE8581\\Subj... 52 \n", - "578 \\Public Studies\\COPD_Bhattacharya_GSE8581\\Subj... 52 \n", - "579 \\Public Studies\\COPD_Bhattacharya_GSE8581\\Subj... 52 \n", - "\n", - " subject.birthDate subject.deathDate subject.id subject.inTrialId \\\n", - "0 None None 1213 GSE8581GSM210006 \n", - "1 None None 1213 GSE8581GSM210006 \n", - "2 None None 1213 GSE8581GSM210006 \n", - "3 None None 1213 GSE8581GSM210006 \n", - "4 None None 1213 GSE8581GSM210006 \n", - "5 None None 1213 GSE8581GSM210006 \n", - "6 None None 1213 GSE8581GSM210006 \n", - "7 None None 1213 GSE8581GSM210006 \n", - "8 None None 1213 GSE8581GSM210006 \n", - "9 None None 1213 GSE8581GSM210006 \n", - "10 None None 1214 GSE8581GSM212788 \n", - "11 None None 1214 GSE8581GSM212788 \n", - "12 None None 1214 GSE8581GSM212788 \n", - "13 None None 1214 GSE8581GSM212788 \n", - "14 None None 1214 GSE8581GSM212788 \n", - "15 None None 1214 GSE8581GSM212788 \n", - "16 None None 1214 GSE8581GSM212788 \n", - "17 None None 1214 GSE8581GSM212788 \n", - "18 None None 1214 GSE8581GSM212788 \n", - "19 None None 1214 GSE8581GSM212788 \n", - "20 None None 1215 GSE8581GSM212067 \n", - "21 None None 1215 GSE8581GSM212067 \n", - "22 None None 1215 GSE8581GSM212067 \n", - "23 None None 1215 GSE8581GSM212067 \n", - "24 None None 1215 GSE8581GSM212067 \n", - "25 None None 1215 GSE8581GSM212067 \n", - "26 None None 1215 GSE8581GSM212067 \n", - "27 None None 1215 GSE8581GSM212067 \n", - "28 None None 1215 GSE8581GSM212067 \n", - "29 None None 1215 GSE8581GSM212067 \n", - ".. ... ... ... ... \n", - "550 None None 1268 GSE8581GSM212854 \n", - "551 None None 1268 GSE8581GSM212854 \n", - "552 None None 1268 GSE8581GSM212854 \n", - "553 None None 1268 GSE8581GSM212854 \n", - "554 None None 1268 GSE8581GSM212854 \n", - "555 None None 1268 GSE8581GSM212854 \n", - "556 None None 1268 GSE8581GSM212854 \n", - "557 None None 1268 GSE8581GSM212854 \n", - "558 None None 1268 GSE8581GSM212854 \n", - "559 None None 1268 GSE8581GSM212854 \n", - "560 None None 1269 GSE8581GSM210188 \n", - "561 None None 1269 GSE8581GSM210188 \n", - "562 None None 1269 GSE8581GSM210188 \n", - "563 None None 1269 GSE8581GSM210188 \n", - "564 None None 1269 GSE8581GSM210188 \n", - "565 None None 1269 GSE8581GSM210188 \n", - "566 None None 1269 GSE8581GSM210188 \n", - "567 None None 1269 GSE8581GSM210188 \n", - "568 None None 1269 GSE8581GSM210188 \n", - "569 None None 1269 GSE8581GSM210188 \n", - "570 None None 1270 GSE8581GSM212810 \n", - "571 None None 1270 GSE8581GSM212810 \n", - "572 None None 1270 GSE8581GSM212810 \n", - "573 None None 1270 GSE8581GSM212810 \n", - "574 None None 1270 GSE8581GSM212810 \n", - "575 None None 1270 GSE8581GSM212810 \n", - "576 None None 1270 GSE8581GSM212810 \n", - "577 None None 1270 GSE8581GSM212810 \n", - "578 None None 1270 GSE8581GSM212810 \n", - "579 None None 1270 GSE8581GSM212810 \n", - "\n", - " subject.maritalStatus subject.race subject.religion subject.sex \\\n", - "0 None Afro American None FEMALE \n", - "1 None Afro American None FEMALE \n", - "2 None Afro American None FEMALE \n", - "3 None Afro American None FEMALE \n", - "4 None Afro American None FEMALE \n", - "5 None Afro American None FEMALE \n", - "6 None Afro American None FEMALE \n", - "7 None Afro American None FEMALE \n", - "8 None Afro American None FEMALE \n", - "9 None Afro American None FEMALE \n", - "10 None Caucasian None FEMALE \n", - "11 None Caucasian None FEMALE \n", - "12 None Caucasian None FEMALE \n", - "13 None Caucasian None FEMALE \n", - "14 None Caucasian None FEMALE \n", - "15 None Caucasian None FEMALE \n", - "16 None Caucasian None FEMALE \n", - "17 None Caucasian None FEMALE \n", - "18 None Caucasian None FEMALE \n", - "19 None Caucasian None FEMALE \n", - "20 None Caucasian None MALE \n", - "21 None Caucasian None MALE \n", - "22 None Caucasian None MALE \n", - "23 None Caucasian None MALE \n", - "24 None Caucasian None MALE \n", - "25 None Caucasian None MALE \n", - "26 None Caucasian None MALE \n", - "27 None Caucasian None MALE \n", - "28 None Caucasian None MALE \n", - "29 None Caucasian None MALE \n", - ".. ... ... ... ... \n", - "550 None Caucasian None MALE \n", - "551 None Caucasian None MALE \n", - "552 None Caucasian None MALE \n", - "553 None Caucasian None MALE \n", - "554 None Caucasian None MALE \n", - "555 None Caucasian None MALE \n", - "556 None Caucasian None MALE \n", - "557 None Caucasian None MALE \n", - "558 None Caucasian None MALE \n", - "559 None Caucasian None MALE \n", - "560 None Caucasian None FEMALE \n", - "561 None Caucasian None FEMALE \n", - "562 None Caucasian None FEMALE \n", - "563 None Caucasian None FEMALE \n", - "564 None Caucasian None FEMALE \n", - "565 None Caucasian None FEMALE \n", - "566 None Caucasian None FEMALE \n", - "567 None Caucasian None FEMALE \n", - "568 None Caucasian None FEMALE \n", - "569 None Caucasian None FEMALE \n", - "570 None Caucasian None FEMALE \n", - "571 None Caucasian None FEMALE \n", - "572 None Caucasian None FEMALE \n", - "573 None Caucasian None FEMALE \n", - "574 None Caucasian None FEMALE \n", - "575 None Caucasian None FEMALE \n", - "576 None Caucasian None FEMALE \n", - "577 None Caucasian None FEMALE \n", - "578 None Caucasian None FEMALE \n", - "579 None Caucasian None FEMALE \n", - "\n", - " subject.trial value \n", - "0 GSE8581 E \n", - "1 GSE8581 non-small cell adenocarcinoma \n", - "2 GSE8581 1.41 \n", - "3 GSE8581 51 \n", - "4 GSE8581 65 \n", - "5 GSE8581 66 \n", - "6 GSE8581 chronic obstructive pulmonary disease \n", - "7 GSE8581 Homo sapiens \n", - "8 GSE8581 Afro American \n", - "9 GSE8581 female \n", - "10 GSE8581 E \n", - "11 GSE8581 non-small cell squamous cell carcinoma \n", - "12 GSE8581 1.29 \n", - "13 GSE8581 53 \n", - "14 GSE8581 77 \n", - "15 GSE8581 67 \n", - "16 GSE8581 chronic obstructive pulmonary disease \n", - "17 GSE8581 Homo sapiens \n", - "18 GSE8581 Caucasian \n", - "19 GSE8581 female \n", - "20 GSE8581 E \n", - "21 GSE8581 inflammation \n", - "22 GSE8581 4.04 \n", - "23 GSE8581 79 \n", - "24 GSE8581 55 \n", - "25 GSE8581 69 \n", - "26 GSE8581 control \n", - "27 GSE8581 Homo sapiens \n", - "28 GSE8581 Caucasian \n", - "29 GSE8581 male \n", - ".. ... ... \n", - "550 GSE8581 E \n", - "551 GSE8581 non-small cell adenocarcinoma \n", - "552 GSE8581 2.26 \n", - "553 GSE8581 83 \n", - "554 GSE8581 64 \n", - "555 GSE8581 66 \n", - "556 GSE8581 not specified \n", - "557 GSE8581 Homo sapiens \n", - "558 GSE8581 Caucasian \n", - "559 GSE8581 male \n", - "560 GSE8581 E \n", - "561 GSE8581 metastatic non-small cell adenocarcinoma \n", - "562 GSE8581 1.2 \n", - "563 GSE8581 72 \n", - "564 GSE8581 65 \n", - "565 GSE8581 63 \n", - "566 GSE8581 not specified \n", - "567 GSE8581 Homo sapiens \n", - "568 GSE8581 Caucasian \n", - "569 GSE8581 female \n", - "570 GSE8581 E \n", - "571 GSE8581 non-small cell squamous cell carcinoma \n", - "572 GSE8581 0.88 \n", - "573 GSE8581 52 \n", - "574 GSE8581 52 \n", - "575 GSE8581 66 \n", - "576 GSE8581 chronic obstructive pulmonary disease \n", - "577 GSE8581 Homo sapiens \n", - "578 GSE8581 Caucasian \n", - "579 GSE8581 female \n", - "\n", - "[580 rows x 12 columns]" - ] - }, - "execution_count": 3, - "metadata": {}, - "output_type": "execute_result" - } - ], + "outputs": [], "source": [ "obs_df1" ] @@ -1353,1186 +141,13 @@ }, { "cell_type": "code", - "execution_count": 5, + "execution_count": null, "metadata": { "collapsed": false, "deletable": true, "editable": true }, - "outputs": [ - { - "name": "stderr", - "output_type": "stream", - "text": [ - "/usr/local/lib/python3.5/site-packages/ipykernel/__main__.py:2: FutureWarning: convert_objects is deprecated. 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labelBiomarker Data\\Affymetrix Human Genome U133 Plus 2.0 ArrayEndpoints\\DiagnosisEndpoints\\FEV1Endpoints\\Forced Expiratory Volume RatioSubjects\\AgeSubjects\\Height (inch)Subjects\\Lung DiseaseSubjects\\OrganismSubjects\\RaceSubjects\\Sex
subject.inTrialId
GSE8581GSM210004Enon-small cell squamous cell carcinoma2.5458.0063.072.0chronic obstructive pulmonary diseaseHomo sapiensCaucasianmale
GSE8581GSM210005Enon-small cell adenocarcinoma1.6983.6684.060.0controlHomo sapiensAfro Americanfemale
GSE8581GSM210006Enon-small cell adenocarcinoma1.4151.0065.066.0chronic obstructive pulmonary diseaseHomo sapiensAfro Americanfemale
GSE8581GSM210007Enon-small cell adenocarcinoma2.5180.9646.066.0not specifiedHomo sapiensCaucasianmale
GSE8581GSM210008Enon-small cell adenocarcinoma1.6457.0053.065.0chronic obstructive pulmonary diseaseHomo sapiensCaucasianfemale
GSE8581GSM210009Enon-small cell squamous cell carcinoma2.7274.0053.064.0controlHomo sapiensCaucasianfemale
GSE8581GSM210010Enon-small cell adenocarcinoma1.4573.0077.063.0not specifiedHomo sapiensCaucasianfemale
GSE8581GSM210011Enon-small cell squamous cell carcinoma1.8756.0056.072.0chronic obstructive pulmonary diseaseHomo sapiensCaucasianmale
GSE8581GSM210012Enon-small cell adenocarcinoma2.7670.5861.069.0not specifiedHomo sapiensCaucasianmale
GSE8581GSM210014Enon-small cell adenocarcinoma1.9878.0071.063.0controlHomo sapiensCaucasianfemale
GSE8581GSM210015Enon-small cell adenocarcinoma2.5974.0068.065.0controlHomo sapiensCaucasianmale
GSE8581GSM210071Eemphysema1.1643.0068.067.0chronic obstructive pulmonary diseaseHomo sapiensCaucasianmale
GSE8581GSM210087Enon-small cell adenocarcinoma2.5974.0068.065.0controlHomo sapiensCaucasianfemale
GSE8581GSM210090Ehematoma4.0868.0050.072.0not specifiedHomo sapiensCaucasianmale
GSE8581GSM210188Emetastatic non-small cell adenocarcinoma1.2072.0065.063.0not specifiedHomo sapiensCaucasianfemale
GSE8581GSM210192Enon-small cell adenocarcinoma2.3175.0050.065.0controlHomo sapiensCaucasianfemale
GSE8581GSM210193EUnknown1.6380.7867.066.0not specifiedHomo sapiensCaucasianfemale
GSE8581GSM210194Enon-small cell squamous cell carcinoma0.5258.0056.060.0chronic obstructive pulmonary diseaseHomo sapiensCaucasianfemale
GSE8581GSM210196Enon-small cell adenocarcinoma2.3074.0057.065.0controlHomo sapiensCaucasianfemale
GSE8581GSM210978Enon-small cell adenocarcinoma1.5374.0073.066.0not specifiedHomo sapiensCaucasianfemale
GSE8581GSM210979Enon-small cell adenocarcinoma2.1776.0055.063.0controlHomo sapiensCaucasianfemale
GSE8581GSM210992Enon-small cell squamous cell carcinoma0.9055.9070.071.0chronic obstructive pulmonary diseaseHomo sapiensCaucasianmale
GSE8581GSM210993Egiant bullae0.4045.0061.073.0chronic obstructive pulmonary diseaseHomo sapiensCaucasianmale
GSE8581GSM210994Ecarcinoid1.6976.0064.063.0not specifiedHomo sapiensCaucasianfemale
GSE8581GSM211007Enon-small cell squamous cell carcinoma1.7059.0061.066.0chronic obstructive pulmonary diseaseHomo sapiensCaucasianmale
GSE8581GSM211008Enon-small cell adenocarcinoma3.6672.0071.071.0controlHomo sapiensCaucasianmale
GSE8581GSM211009Enon-small cell adenocarcinoma1.6441.0075.071.0chronic obstructive pulmonary diseaseHomo sapiensCaucasianmale
GSE8581GSM211010Enon-small cell adenocarcinoma1.4486.0061.060.0not specifiedHomo sapiensCaucasianfemale
GSE8581GSM211865Enon-small cell squamous cell carcinoma2.1371.0069.067.0not specifiedHomo sapiensCaucasianmale
GSE8581GSM211872Enon-small cell squamous cell carcinoma2.6170.0074.070.0not specifiedHomo sapiensCaucasianmale
GSE8581GSM212067Einflammation4.0479.0055.069.0controlHomo sapiensCaucasianmale
GSE8581GSM212068Emetastatic renal cell carcinoma1.9985.0078.063.0controlHomo sapiensCaucasianfemale
GSE8581GSM212069Eno malignancy1.6077.0081.066.0not specifiedHomo sapiensCaucasianfemale
GSE8581GSM212070Ecarcinoid3.7081.8640.067.0controlHomo sapiensCaucasianmale
GSE8581GSM212074Enon-small cell squamous cell carcinoma2.0654.0064.065.0chronic obstructive pulmonary diseaseHomo sapiensCaucasianmale
GSE8581GSM212075Enon-small cell squamous cell carcinoma1.3078.0079.063.0chronic obstructive pulmonary diseaseHomo sapiensAfro Americanfemale
GSE8581GSM212787ENSC-Mixed3.6678.0078.070.0controlHomo sapiensCaucasianmale
GSE8581GSM212788Enon-small cell squamous cell carcinoma1.2953.0077.067.0chronic obstructive pulmonary diseaseHomo sapiensCaucasianfemale
GSE8581GSM212789Enon-small cell squamous cell carcinoma1.9486.0062.062.0controlHomo sapiensCaucasianfemale
GSE8581GSM212790Enon-small cell squamous cell carcinoma2.8375.0054.075.0controlHomo sapiensCaucasianfemale
GSE8581GSM212809Enon-small cell adenocarcinoma1.2889.0061.065.0not specifiedHomo sapiensCaucasianfemale
GSE8581GSM212810Enon-small cell squamous cell carcinoma0.8852.0052.066.0chronic obstructive pulmonary diseaseHomo sapiensCaucasianfemale
GSE8581GSM212811Enon-small cell squamous cell carcinoma1.3782.0077.058.0controlHomo sapiensCaucasianfemale
GSE8581GSM212848Enon-small cell squamous cell carcinoma0.5544.0059.058.0chronic obstructive pulmonary diseaseHomo sapiensCaucasianfemale
GSE8581GSM212849Enon-small cell adenocarcinoma2.7380.0039.073.0not specifiedHomo sapiensCaucasianmale
GSE8581GSM212850Ecarcinoid2.3276.0071.069.0not specifiedHomo sapiensCaucasianmale
GSE8581GSM212852EGiant Cell Tumor0.9963.0072.060.0chronic obstructive pulmonary diseaseHomo sapiensCaucasianfemale
GSE8581GSM212853Elymphoma2.4280.0071.066.0controlHomo sapiensCaucasianfemale
GSE8581GSM212854Enon-small cell adenocarcinoma2.2683.0064.066.0not specifiedHomo sapiensCaucasianmale
GSE8581GSM212855Enon-small cell adenocarcinoma2.4369.0073.068.0not specifiedHomo sapiensCaucasianmale
GSE8581GSM213017Enon-small cell adenocarcinoma2.1273.0079.069.0not specifiedHomo sapiensCaucasianmale
GSE8581GSM213018Enon-small cell adenocarcinoma2.3481.0082.068.0not specifiedHomo sapiensCaucasianmale
GSE8581GSM213019Enon-small cell adenocarcinoma1.7072.0071.071.0not specifiedHomo sapiensCaucasianfemale
GSE8581GSM213020Enon-small cell adenocarcinoma0.6742.0075.063.0chronic obstructive pulmonary diseaseHomo sapiensCaucasianmale
GSE8581GSM213034Enon-small cell adenocarcinoma2.5661.0070.069.0not specifiedHomo sapiensCaucasianmale
GSE8581GSM213035Enon-small cell squamous cell carcinoma3.1173.0067.071.0controlHomo sapiensCaucasianmale
GSE8581GSM213036Enon-small cell squamous cell carcinoma2.6871.0059.069.0controlHomo sapiensCaucasianfemale
GSE8581GSM213037Enon-small cell squamous cell carcinoma2.2572.0077.066.0not specifiedHomo sapiensCaucasianmale
\n", - "
" - ], - "text/plain": [ - "label Biomarker Data\\Affymetrix Human Genome U133 Plus 2.0 Array \\\n", - "subject.inTrialId \n", - "GSE8581GSM210004 E \n", - "GSE8581GSM210005 E \n", - "GSE8581GSM210006 E \n", - "GSE8581GSM210007 E \n", - "GSE8581GSM210008 E \n", - "GSE8581GSM210009 E \n", - "GSE8581GSM210010 E \n", - "GSE8581GSM210011 E \n", - "GSE8581GSM210012 E \n", - "GSE8581GSM210014 E \n", - "GSE8581GSM210015 E \n", - "GSE8581GSM210071 E \n", - "GSE8581GSM210087 E \n", - "GSE8581GSM210090 E \n", - "GSE8581GSM210188 E \n", - "GSE8581GSM210192 E \n", - "GSE8581GSM210193 E \n", - "GSE8581GSM210194 E \n", - "GSE8581GSM210196 E \n", - "GSE8581GSM210978 E \n", - "GSE8581GSM210979 E \n", - "GSE8581GSM210992 E \n", - "GSE8581GSM210993 E \n", - "GSE8581GSM210994 E \n", - "GSE8581GSM211007 E \n", - "GSE8581GSM211008 E \n", - "GSE8581GSM211009 E \n", - "GSE8581GSM211010 E \n", - "GSE8581GSM211865 E \n", - "GSE8581GSM211872 E \n", - "GSE8581GSM212067 E \n", - "GSE8581GSM212068 E \n", - "GSE8581GSM212069 E \n", - "GSE8581GSM212070 E \n", - "GSE8581GSM212074 E \n", - "GSE8581GSM212075 E \n", - "GSE8581GSM212787 E \n", - "GSE8581GSM212788 E \n", - "GSE8581GSM212789 E \n", - "GSE8581GSM212790 E \n", - "GSE8581GSM212809 E \n", - "GSE8581GSM212810 E \n", - "GSE8581GSM212811 E \n", - "GSE8581GSM212848 E \n", - "GSE8581GSM212849 E \n", - "GSE8581GSM212850 E \n", - "GSE8581GSM212852 E \n", - "GSE8581GSM212853 E \n", - "GSE8581GSM212854 E \n", - "GSE8581GSM212855 E \n", - "GSE8581GSM213017 E \n", - "GSE8581GSM213018 E \n", - "GSE8581GSM213019 E \n", - "GSE8581GSM213020 E \n", - "GSE8581GSM213034 E \n", - "GSE8581GSM213035 E \n", - "GSE8581GSM213036 E \n", - "GSE8581GSM213037 E \n", - "\n", - "label Endpoints\\Diagnosis Endpoints\\FEV1 \\\n", - "subject.inTrialId \n", - "GSE8581GSM210004 non-small cell squamous cell carcinoma 2.54 \n", - "GSE8581GSM210005 non-small cell adenocarcinoma 1.69 \n", - "GSE8581GSM210006 non-small cell adenocarcinoma 1.41 \n", - "GSE8581GSM210007 non-small cell adenocarcinoma 2.51 \n", - "GSE8581GSM210008 non-small cell adenocarcinoma 1.64 \n", - "GSE8581GSM210009 non-small cell squamous cell carcinoma 2.72 \n", - "GSE8581GSM210010 non-small cell adenocarcinoma 1.45 \n", - "GSE8581GSM210011 non-small cell squamous cell carcinoma 1.87 \n", - "GSE8581GSM210012 non-small cell adenocarcinoma 2.76 \n", - "GSE8581GSM210014 non-small cell adenocarcinoma 1.98 \n", - "GSE8581GSM210015 non-small cell adenocarcinoma 2.59 \n", - "GSE8581GSM210071 emphysema 1.16 \n", - "GSE8581GSM210087 non-small cell adenocarcinoma 2.59 \n", - "GSE8581GSM210090 hematoma 4.08 \n", - "GSE8581GSM210188 metastatic non-small cell adenocarcinoma 1.20 \n", - "GSE8581GSM210192 non-small cell adenocarcinoma 2.31 \n", - "GSE8581GSM210193 Unknown 1.63 \n", - "GSE8581GSM210194 non-small cell squamous cell carcinoma 0.52 \n", - "GSE8581GSM210196 non-small cell adenocarcinoma 2.30 \n", - "GSE8581GSM210978 non-small cell adenocarcinoma 1.53 \n", - "GSE8581GSM210979 non-small cell adenocarcinoma 2.17 \n", - "GSE8581GSM210992 non-small cell squamous cell carcinoma 0.90 \n", - "GSE8581GSM210993 giant bullae 0.40 \n", - "GSE8581GSM210994 carcinoid 1.69 \n", - "GSE8581GSM211007 non-small cell squamous cell carcinoma 1.70 \n", - "GSE8581GSM211008 non-small cell adenocarcinoma 3.66 \n", - "GSE8581GSM211009 non-small cell adenocarcinoma 1.64 \n", - "GSE8581GSM211010 non-small cell adenocarcinoma 1.44 \n", - "GSE8581GSM211865 non-small cell squamous cell carcinoma 2.13 \n", - "GSE8581GSM211872 non-small cell squamous cell carcinoma 2.61 \n", - "GSE8581GSM212067 inflammation 4.04 \n", - "GSE8581GSM212068 metastatic renal cell carcinoma 1.99 \n", - "GSE8581GSM212069 no malignancy 1.60 \n", - "GSE8581GSM212070 carcinoid 3.70 \n", - "GSE8581GSM212074 non-small cell squamous cell carcinoma 2.06 \n", - "GSE8581GSM212075 non-small cell squamous cell carcinoma 1.30 \n", - "GSE8581GSM212787 NSC-Mixed 3.66 \n", - "GSE8581GSM212788 non-small cell squamous cell carcinoma 1.29 \n", - "GSE8581GSM212789 non-small cell squamous cell carcinoma 1.94 \n", - "GSE8581GSM212790 non-small cell squamous cell carcinoma 2.83 \n", - "GSE8581GSM212809 non-small cell adenocarcinoma 1.28 \n", - "GSE8581GSM212810 non-small cell squamous cell carcinoma 0.88 \n", - "GSE8581GSM212811 non-small cell squamous cell carcinoma 1.37 \n", - "GSE8581GSM212848 non-small cell squamous cell carcinoma 0.55 \n", - "GSE8581GSM212849 non-small cell adenocarcinoma 2.73 \n", - "GSE8581GSM212850 carcinoid 2.32 \n", - "GSE8581GSM212852 Giant Cell Tumor 0.99 \n", - "GSE8581GSM212853 lymphoma 2.42 \n", - "GSE8581GSM212854 non-small cell adenocarcinoma 2.26 \n", - "GSE8581GSM212855 non-small cell adenocarcinoma 2.43 \n", - "GSE8581GSM213017 non-small cell adenocarcinoma 2.12 \n", - "GSE8581GSM213018 non-small cell adenocarcinoma 2.34 \n", - "GSE8581GSM213019 non-small cell adenocarcinoma 1.70 \n", - "GSE8581GSM213020 non-small cell adenocarcinoma 0.67 \n", - "GSE8581GSM213034 non-small cell adenocarcinoma 2.56 \n", - "GSE8581GSM213035 non-small cell squamous cell carcinoma 3.11 \n", - "GSE8581GSM213036 non-small cell squamous cell carcinoma 2.68 \n", - "GSE8581GSM213037 non-small cell squamous cell carcinoma 2.25 \n", - "\n", - "label Endpoints\\Forced Expiratory Volume Ratio Subjects\\Age \\\n", - "subject.inTrialId \n", - "GSE8581GSM210004 58.00 63.0 \n", - "GSE8581GSM210005 83.66 84.0 \n", - "GSE8581GSM210006 51.00 65.0 \n", - "GSE8581GSM210007 80.96 46.0 \n", - "GSE8581GSM210008 57.00 53.0 \n", - "GSE8581GSM210009 74.00 53.0 \n", - "GSE8581GSM210010 73.00 77.0 \n", - "GSE8581GSM210011 56.00 56.0 \n", - "GSE8581GSM210012 70.58 61.0 \n", - "GSE8581GSM210014 78.00 71.0 \n", - "GSE8581GSM210015 74.00 68.0 \n", - "GSE8581GSM210071 43.00 68.0 \n", - "GSE8581GSM210087 74.00 68.0 \n", - "GSE8581GSM210090 68.00 50.0 \n", - "GSE8581GSM210188 72.00 65.0 \n", - "GSE8581GSM210192 75.00 50.0 \n", - "GSE8581GSM210193 80.78 67.0 \n", - "GSE8581GSM210194 58.00 56.0 \n", - "GSE8581GSM210196 74.00 57.0 \n", - "GSE8581GSM210978 74.00 73.0 \n", - "GSE8581GSM210979 76.00 55.0 \n", - "GSE8581GSM210992 55.90 70.0 \n", - "GSE8581GSM210993 45.00 61.0 \n", - "GSE8581GSM210994 76.00 64.0 \n", - "GSE8581GSM211007 59.00 61.0 \n", - "GSE8581GSM211008 72.00 71.0 \n", - "GSE8581GSM211009 41.00 75.0 \n", - "GSE8581GSM211010 86.00 61.0 \n", - "GSE8581GSM211865 71.00 69.0 \n", - "GSE8581GSM211872 70.00 74.0 \n", - "GSE8581GSM212067 79.00 55.0 \n", - "GSE8581GSM212068 85.00 78.0 \n", - "GSE8581GSM212069 77.00 81.0 \n", - "GSE8581GSM212070 81.86 40.0 \n", - "GSE8581GSM212074 54.00 64.0 \n", - "GSE8581GSM212075 78.00 79.0 \n", - "GSE8581GSM212787 78.00 78.0 \n", - "GSE8581GSM212788 53.00 77.0 \n", - "GSE8581GSM212789 86.00 62.0 \n", - "GSE8581GSM212790 75.00 54.0 \n", - "GSE8581GSM212809 89.00 61.0 \n", - "GSE8581GSM212810 52.00 52.0 \n", - "GSE8581GSM212811 82.00 77.0 \n", - "GSE8581GSM212848 44.00 59.0 \n", - "GSE8581GSM212849 80.00 39.0 \n", - "GSE8581GSM212850 76.00 71.0 \n", - "GSE8581GSM212852 63.00 72.0 \n", - "GSE8581GSM212853 80.00 71.0 \n", - "GSE8581GSM212854 83.00 64.0 \n", - "GSE8581GSM212855 69.00 73.0 \n", - "GSE8581GSM213017 73.00 79.0 \n", - "GSE8581GSM213018 81.00 82.0 \n", - "GSE8581GSM213019 72.00 71.0 \n", - "GSE8581GSM213020 42.00 75.0 \n", - "GSE8581GSM213034 61.00 70.0 \n", - "GSE8581GSM213035 73.00 67.0 \n", - "GSE8581GSM213036 71.00 59.0 \n", - "GSE8581GSM213037 72.00 77.0 \n", - "\n", - "label Subjects\\Height (inch) \\\n", - "subject.inTrialId \n", - "GSE8581GSM210004 72.0 \n", - "GSE8581GSM210005 60.0 \n", - "GSE8581GSM210006 66.0 \n", - "GSE8581GSM210007 66.0 \n", - "GSE8581GSM210008 65.0 \n", - "GSE8581GSM210009 64.0 \n", - "GSE8581GSM210010 63.0 \n", - "GSE8581GSM210011 72.0 \n", - "GSE8581GSM210012 69.0 \n", - "GSE8581GSM210014 63.0 \n", - "GSE8581GSM210015 65.0 \n", - "GSE8581GSM210071 67.0 \n", - "GSE8581GSM210087 65.0 \n", - "GSE8581GSM210090 72.0 \n", - "GSE8581GSM210188 63.0 \n", - "GSE8581GSM210192 65.0 \n", - "GSE8581GSM210193 66.0 \n", - "GSE8581GSM210194 60.0 \n", - "GSE8581GSM210196 65.0 \n", - "GSE8581GSM210978 66.0 \n", - "GSE8581GSM210979 63.0 \n", - "GSE8581GSM210992 71.0 \n", - "GSE8581GSM210993 73.0 \n", - "GSE8581GSM210994 63.0 \n", - "GSE8581GSM211007 66.0 \n", - "GSE8581GSM211008 71.0 \n", - "GSE8581GSM211009 71.0 \n", - "GSE8581GSM211010 60.0 \n", - "GSE8581GSM211865 67.0 \n", - "GSE8581GSM211872 70.0 \n", - "GSE8581GSM212067 69.0 \n", - "GSE8581GSM212068 63.0 \n", - "GSE8581GSM212069 66.0 \n", - "GSE8581GSM212070 67.0 \n", - "GSE8581GSM212074 65.0 \n", - "GSE8581GSM212075 63.0 \n", - "GSE8581GSM212787 70.0 \n", - "GSE8581GSM212788 67.0 \n", - "GSE8581GSM212789 62.0 \n", - "GSE8581GSM212790 75.0 \n", - "GSE8581GSM212809 65.0 \n", - "GSE8581GSM212810 66.0 \n", - "GSE8581GSM212811 58.0 \n", - "GSE8581GSM212848 58.0 \n", - "GSE8581GSM212849 73.0 \n", - "GSE8581GSM212850 69.0 \n", - "GSE8581GSM212852 60.0 \n", - "GSE8581GSM212853 66.0 \n", - "GSE8581GSM212854 66.0 \n", - "GSE8581GSM212855 68.0 \n", - "GSE8581GSM213017 69.0 \n", - "GSE8581GSM213018 68.0 \n", - "GSE8581GSM213019 71.0 \n", - "GSE8581GSM213020 63.0 \n", - "GSE8581GSM213034 69.0 \n", - "GSE8581GSM213035 71.0 \n", - "GSE8581GSM213036 69.0 \n", - "GSE8581GSM213037 66.0 \n", - "\n", - "label Subjects\\Lung Disease Subjects\\Organism \\\n", - "subject.inTrialId \n", - "GSE8581GSM210004 chronic obstructive pulmonary disease Homo sapiens \n", - "GSE8581GSM210005 control Homo sapiens \n", - "GSE8581GSM210006 chronic obstructive pulmonary disease Homo sapiens \n", - "GSE8581GSM210007 not specified Homo sapiens \n", - "GSE8581GSM210008 chronic obstructive pulmonary disease Homo sapiens \n", - "GSE8581GSM210009 control Homo sapiens \n", - "GSE8581GSM210010 not specified Homo sapiens \n", - "GSE8581GSM210011 chronic obstructive pulmonary disease Homo sapiens \n", - "GSE8581GSM210012 not specified Homo sapiens \n", - "GSE8581GSM210014 control Homo sapiens \n", - "GSE8581GSM210015 control Homo sapiens \n", - "GSE8581GSM210071 chronic obstructive pulmonary disease Homo sapiens \n", - "GSE8581GSM210087 control Homo sapiens \n", - "GSE8581GSM210090 not specified Homo sapiens \n", - "GSE8581GSM210188 not specified Homo sapiens \n", - "GSE8581GSM210192 control Homo sapiens \n", - "GSE8581GSM210193 not specified Homo sapiens \n", - "GSE8581GSM210194 chronic obstructive pulmonary disease Homo sapiens \n", - "GSE8581GSM210196 control Homo sapiens \n", - "GSE8581GSM210978 not specified Homo sapiens \n", - "GSE8581GSM210979 control Homo sapiens \n", - "GSE8581GSM210992 chronic obstructive pulmonary disease Homo sapiens \n", - "GSE8581GSM210993 chronic obstructive pulmonary disease Homo sapiens \n", - "GSE8581GSM210994 not specified Homo sapiens \n", - "GSE8581GSM211007 chronic obstructive pulmonary disease Homo sapiens \n", - "GSE8581GSM211008 control Homo sapiens \n", - "GSE8581GSM211009 chronic obstructive pulmonary disease Homo sapiens \n", - "GSE8581GSM211010 not specified Homo sapiens \n", - "GSE8581GSM211865 not specified Homo sapiens \n", - "GSE8581GSM211872 not specified Homo sapiens \n", - "GSE8581GSM212067 control Homo sapiens \n", - "GSE8581GSM212068 control Homo sapiens \n", - "GSE8581GSM212069 not specified Homo sapiens \n", - "GSE8581GSM212070 control Homo sapiens \n", - "GSE8581GSM212074 chronic obstructive pulmonary disease Homo sapiens \n", - "GSE8581GSM212075 chronic obstructive pulmonary disease Homo sapiens \n", - "GSE8581GSM212787 control Homo sapiens \n", - "GSE8581GSM212788 chronic obstructive pulmonary disease Homo sapiens \n", - "GSE8581GSM212789 control Homo sapiens \n", - "GSE8581GSM212790 control Homo sapiens \n", - "GSE8581GSM212809 not specified Homo sapiens \n", - "GSE8581GSM212810 chronic obstructive pulmonary disease Homo sapiens \n", - "GSE8581GSM212811 control Homo sapiens \n", - "GSE8581GSM212848 chronic obstructive pulmonary disease Homo sapiens \n", - "GSE8581GSM212849 not specified Homo sapiens \n", - "GSE8581GSM212850 not specified Homo sapiens \n", - "GSE8581GSM212852 chronic obstructive pulmonary disease Homo sapiens \n", - "GSE8581GSM212853 control Homo sapiens \n", - "GSE8581GSM212854 not specified Homo sapiens \n", - "GSE8581GSM212855 not specified Homo sapiens \n", - "GSE8581GSM213017 not specified Homo sapiens \n", - "GSE8581GSM213018 not specified Homo sapiens \n", - "GSE8581GSM213019 not specified Homo sapiens \n", - "GSE8581GSM213020 chronic obstructive pulmonary disease Homo sapiens \n", - "GSE8581GSM213034 not specified Homo sapiens \n", - "GSE8581GSM213035 control Homo sapiens \n", - "GSE8581GSM213036 control Homo sapiens \n", - "GSE8581GSM213037 not specified Homo sapiens \n", - "\n", - "label Subjects\\Race Subjects\\Sex \n", - "subject.inTrialId \n", - "GSE8581GSM210004 Caucasian male \n", - "GSE8581GSM210005 Afro American female \n", - "GSE8581GSM210006 Afro American female \n", - "GSE8581GSM210007 Caucasian male \n", - "GSE8581GSM210008 Caucasian female \n", - "GSE8581GSM210009 Caucasian female \n", - "GSE8581GSM210010 Caucasian female \n", - "GSE8581GSM210011 Caucasian male \n", - "GSE8581GSM210012 Caucasian male \n", - "GSE8581GSM210014 Caucasian female \n", - "GSE8581GSM210015 Caucasian male \n", - "GSE8581GSM210071 Caucasian male \n", - "GSE8581GSM210087 Caucasian female \n", - "GSE8581GSM210090 Caucasian male \n", - "GSE8581GSM210188 Caucasian female \n", - "GSE8581GSM210192 Caucasian female \n", - "GSE8581GSM210193 Caucasian female \n", - "GSE8581GSM210194 Caucasian female \n", - "GSE8581GSM210196 Caucasian female \n", - "GSE8581GSM210978 Caucasian female \n", - "GSE8581GSM210979 Caucasian female \n", - "GSE8581GSM210992 Caucasian male \n", - "GSE8581GSM210993 Caucasian male \n", - "GSE8581GSM210994 Caucasian female \n", - "GSE8581GSM211007 Caucasian male \n", - "GSE8581GSM211008 Caucasian male \n", - "GSE8581GSM211009 Caucasian male \n", - "GSE8581GSM211010 Caucasian female \n", - "GSE8581GSM211865 Caucasian male \n", - "GSE8581GSM211872 Caucasian male \n", - "GSE8581GSM212067 Caucasian male \n", - "GSE8581GSM212068 Caucasian female \n", - "GSE8581GSM212069 Caucasian female \n", - "GSE8581GSM212070 Caucasian male \n", - "GSE8581GSM212074 Caucasian male \n", - "GSE8581GSM212075 Afro American female \n", - "GSE8581GSM212787 Caucasian male \n", - "GSE8581GSM212788 Caucasian female \n", - "GSE8581GSM212789 Caucasian female \n", - "GSE8581GSM212790 Caucasian female \n", - "GSE8581GSM212809 Caucasian female \n", - "GSE8581GSM212810 Caucasian female \n", - "GSE8581GSM212811 Caucasian female \n", - "GSE8581GSM212848 Caucasian female \n", - "GSE8581GSM212849 Caucasian male \n", - "GSE8581GSM212850 Caucasian male \n", - "GSE8581GSM212852 Caucasian female \n", - "GSE8581GSM212853 Caucasian female \n", - "GSE8581GSM212854 Caucasian male \n", - "GSE8581GSM212855 Caucasian male \n", - "GSE8581GSM213017 Caucasian male \n", - "GSE8581GSM213018 Caucasian male \n", - "GSE8581GSM213019 Caucasian female \n", - "GSE8581GSM213020 Caucasian male \n", - "GSE8581GSM213034 Caucasian male \n", - "GSE8581GSM213035 Caucasian male \n", - "GSE8581GSM213036 Caucasian female \n", - "GSE8581GSM213037 Caucasian male " - ] - }, - "execution_count": 5, - "metadata": {}, - "output_type": "execute_result" - } - ], + "outputs": [], "source": [ "obs_df2 = obs_df1.pivot(index = 'subject.inTrialId', columns = 'label', values = 'value')\n", "obs_df3 = obs_df2.convert_objects()\n", @@ -2554,7 +169,7 @@ }, { "cell_type": "code", - 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PXK\\1552275_s_at5.9949175.8138744.7761365.6598166.2705644.5797846.1149546.5085554.2799916.366775...6.3281944.6694975.7844396.0795814.0718145.3208135.7645051.6398946.6898166.328073
VPS18\\1552276_a_at4.9890213.3471703.8632152.2218933.4139052.9924422.6740882.5350923.9529584.968243...4.4469972.2215212.1900740.6950141.5831773.5967321.4828843.9454862.4674624.737622
C9orf30\\1552277_a_at6.6774106.7292405.9528305.8925227.0412105.7878586.3893836.8171885.1263416.659425...6.5007346.4416736.5225825.8373106.1561886.7893516.7387544.8177315.9688126.831345
SLC46A1\\1552278_a_at5.4168404.7194791.6273174.9416704.5943633.4906604.6465203.3661263.1782704.914789...4.9924244.8491444.9017313.0252173.6481555.2190914.8775193.6578002.2196521.710085
SLC46A1\\1552279_a_at5.9474306.2378284.7704755.8558956.4359094.7094066.1238616.2508865.1094276.221452...6.0378045.8001086.3787235.3327545.1760716.0759905.6273973.4829134.9049226.353636
TIMD4\\1552280_at3.0112450.5956952.2762083.9533493.0287163.2341183.8355304.3094024.2363011.833744...4.6882593.9712036.4953261.527301-1.3507954.5218552.9707143.8290383.7051371.563641
SLC39A5\\1552281_at3.8796963.6804594.3153783.0901574.3789622.6758323.0827784.8041983.5955393.007707...5.0331063.8988085.0643015.3194164.8413544.4341144.9387702.9856521.6662203.580387
ZDHHC11\\1552283_s_at5.9154837.0618955.3118127.4673776.9088855.6137008.2900426.1761016.7395244.919631...8.6953505.2292654.6312215.7664497.5918147.8798656.9424324.8901657.8000004.615399
ATP6V1E2\\1552286_at5.6777004.4594581.8633004.3868044.9294033.7262105.1069974.8082104.4904294.490005...5.2161993.4841253.2733824.5090883.2992454.0724325.2257343.8723864.4814094.960136
AFG3L1P\\1552287_s_at6.7600216.9491965.8655066.3028297.7840335.8390987.1685226.6171816.5305147.368646...8.3091766.6278615.9044096.7705916.7048447.4908596.4646406.1326397.1539575.973981
CILP2\\1552288_at0.9734570.6556362.6394043.3674691.3123282.0654721.5969831.784165-0.3577220.858180...2.3213653.4175835.4209442.2149730.7317223.8640281.0351593.7300750.9388353.225406
CILP2\\1552289_a_at2.2460044.6571712.4899104.0294884.4532153.8199032.7870942.2003943.2575014.792861...1.9084944.3088346.5049084.2195481.5763434.5225274.5632864.4684532.6003324.047154
PIGX\\1552291_at6.3988865.7855905.3483675.7355306.1896475.2012505.7054336.2363804.3136525.726518...5.6744305.9121115.5293744.6456095.0364866.5705726.0245153.8219655.0400686.483890
TMEM196\\1552293_at2.4410612.0188580.7266921.9743461.9141053.6725382.7336323.7350890.3538202.733213...3.9100032.2120212.9202721.8724860.0520122.9224381.0513580.6193572.0514832.915943
SLC39A13\\1552295_a_at5.9399866.8817875.6772266.2662286.0195445.1252835.6485726.8213025.3208896.255087...7.0264245.9926395.9337076.1545555.9222726.4010016.2540934.6166056.4989266.135094
BEST4\\1552296_at0.9827361.3010081.4745973.3976254.0426362.8851332.2301971.1298761.6198682.958288...3.573714-1.1436311.2383771.8109282.9195351.544411-0.2875010.5877780.7176050.702436
AKD1\\1552299_at2.7123564.9311490.8396533.9626234.5206423.0385683.1175654.2849730.4207253.272617...3.5566264.0675272.3163434.0292502.5883494.2786764.6334722.1594194.6851835.289687
CORO6\\1552301_a_at5.5071415.0328554.8322324.8003465.4773184.7743865.6665244.8651864.4829584.901128...5.4546835.1320635.6805354.9671184.5975315.2418824.7509984.1007004.9189975.498704
TMEM106A\\1552302_at6.4544705.4676585.6752945.4586584.1836455.5139584.8423155.0647236.6580974.751935...6.2588966.2599485.9886395.6476315.5612227.2084395.2997255.2746013.9229115.670311
TMEM106A\\1552303_a_at6.0649504.9657804.7433805.2945775.4968304.7226305.5133145.5827824.4508024.864072...5.5194105.8959625.1271215.1749065.1502716.0818595.5293843.7451735.3452585.793316
ALG10\\1552304_at1.4661104.3323140.1477893.8005482.2242410.155840-0.0119181.4907343.0973293.367231...0.1362571.3336871.3114740.2575783.5506791.6462233.1712973.1638130.4583823.120926
ALG10\\1552306_at4.4202134.7707184.2003004.3903173.5804713.7748400.5778864.2985702.0658314.004726...3.4163134.5219934.3298993.1379463.1540263.4685834.0228653.2912193.6309884.785723
TTC39C\\1552307_a_at5.4381505.6434904.2382215.1084035.9969564.9440815.0858584.9703713.7059125.556077...5.2415245.0212535.6201644.8789124.1809595.5940955.2042193.4805115.3526214.797475
NEXN\\1552309_a_at7.3788587.2024577.4091287.1927667.6554886.4831277.7199847.7987575.8661917.127757...8.1207047.1020078.3638028.1180536.9006378.5630217.8389395.3846897.3996248.523507
C15orf40\\1552310_at6.8468946.7497095.0367066.0615737.3425735.2329726.8055766.7128715.7639646.738862...7.1992706.0420536.2199395.8268486.2506496.5956606.1174894.4671956.8771686.433564
RAX2\\1552311_a_at6.0102546.0209335.1488164.7116774.9440674.4224355.9899545.2890234.6147454.118999...5.2167774.7925955.7089514.6684431.6905385.0393535.6765163.6614304.0365305.519293
MFAP3\\1552312_a_at4.9241246.2218913.6003295.0184385.4032920.0566814.9663985.8638322.4300205.426540...5.0069674.4057005.9858675.5804653.2138784.3370056.002496-0.1930286.4085476.253379
..................................................................
GPR153\\64942_at6.9930867.3561006.4433276.8817017.2960356.3929726.7536317.1625226.0952037.225506...7.8577886.9459127.0687896.3779276.2631967.4059757.3233795.2435667.0673487.035690
YIPF2\\65086_at5.0634995.7295774.9120655.6843396.6827845.0323836.5634886.2159455.2441306.505889...6.3899025.9717856.3773946.2127153.8516096.3698635.5009844.2285966.0365035.896250
INO80B\\65133_i_at3.4769264.6766284.1795913.8643744.1913573.1379434.6380624.7662244.4572274.263455...5.3505474.1357814.4398164.0229714.6226264.6595484.5189952.9847834.6211613.318190
KIAA1609\\65438_at4.7406044.3190112.2610403.4393174.8174293.1575323.9140963.9266263.5074144.279404...4.9479474.4936473.7969714.2465913.3619095.0391733.7026353.2804523.9230833.776799
C2orf68\\65472_at6.3907185.4514295.0159615.0801976.8266255.1007136.5350595.7259024.8864575.903884...6.5621315.2866485.1068975.8423435.0416686.0382525.8183093.6165585.9871665.923565
HEATR6\\65493_at5.7432835.5699624.9094614.7278885.9828544.5971085.2928265.0783794.7590445.737952...6.0920855.5799744.6419225.0039755.0831155.7387985.5036704.3839675.1327705.441649
AP1M2\\65517_at5.0152885.6082474.7528775.6810955.5683824.6976355.0250695.4118844.9046055.834709...6.3674255.7615543.0492964.8002115.4235786.2850775.0531683.1449035.0588924.476732
UBE2D4\\65521_at6.5751326.8533226.0136686.2793476.7865315.6537346.4622786.9971345.3143417.116282...6.5013506.5572426.6306126.9929045.4900256.4489886.7777354.2978446.7863096.897567
FAM86B1\\65585_at5.0486295.4065544.4231285.2505716.1945134.2731356.0077074.8208074.6626276.018554...6.9300394.9784064.4971015.6199825.3043296.2349345.0569303.7064205.5555983.894760
LOC388796\\65588_at5.2306836.5633505.2867745.4806796.9352714.0375235.8178135.6609144.4763366.621256...6.7447675.8983415.0016406.0665395.3883176.2650135.7482254.5729936.1921215.323954
WDR48\\65591_at7.5977327.8279596.4057177.3197537.8841896.0838947.4421317.6939545.3006667.808906...7.0209477.0872297.3174317.6349425.7205006.2787647.9722683.8444367.9391097.744370
TMEM80\\65630_at6.5274136.7763014.9737546.3067007.2011055.8924936.6575836.7744055.1416046.640374...7.1051446.2955475.5988065.8504475.5349426.9648956.4981494.7038986.4892996.097097
ENGASE\\65635_at7.5091187.5992296.5547056.9571488.0535466.5839997.2157857.5801087.2186367.206663...8.7195777.2397426.7012307.1411676.7751827.7884317.4560346.6417577.4303357.567059
GPR124\\65718_at5.8719646.3231665.7906786.1191076.7364295.8923236.5285376.4767595.0370185.856993...6.0842476.2631135.9736375.9804735.1146715.4179376.1911344.6838036.4524375.947844
RHOT2\\65770_at4.9795826.6486815.6565426.6231886.8685265.5175916.0873196.5677545.8812716.476688...7.2115185.9453834.9664776.3994895.8968026.9285366.4918515.5666786.2148655.773669
MAN1B1\\65884_at6.3314886.7528025.0466666.1311166.9025925.5750886.5032766.0715956.3905926.409104...7.2597246.1880575.7303086.0368486.3655327.3438256.5216685.8233426.5847915.802803
HNRNPUL2\\66053_at4.5983295.0196803.6790524.6604495.0143953.2989084.2115345.3478713.0405334.145050...4.7211765.1022893.6140864.8845692.4461402.6229024.7649251.7233714.7326224.419229
WNT6\\71933_at6.2421096.3369605.2879086.1321435.8547465.3782935.4238276.3982674.0296215.859915...5.1879426.0614806.4558735.3016064.4119084.3563486.1014842.4430505.9284636.729403
RABEP2\\74694_s_at6.6047906.7282745.9160996.2824866.9373805.9559156.9340456.3094586.9267356.693041...7.6840266.3190675.9195626.6709686.5703877.4759206.5343145.8339406.6105076.051250
FKBP15\\76897_s_at3.2636955.1830223.5918594.9709412.8337562.2859413.9918174.4290544.3158995.580519...4.3116774.7148013.4212104.4835643.384381-0.9277514.803769-0.1795104.7716744.025977
RABEP2\\77508_r_at6.2107246.2338405.1564336.1809576.1485315.2738745.8535296.0033325.0606485.879838...6.1907675.6777456.4400094.9538985.4327765.7830986.1190974.8911135.9483216.117479
ZNF335\\78330_at4.3192065.1942254.3420644.2516365.0040293.9826194.3370194.3409753.2827244.485485...4.5721264.6648584.2009124.3787684.1223501.4414094.5635242.7010484.0514944.539903
LOC100129250\\78383_at6.0917026.2563794.5340305.4584286.3763095.3521586.3078696.2524184.9329356.165904...5.8538265.7251006.4007456.3459095.1955015.7019185.7364724.3558066.5251236.154697
ZNF783\\78495_at5.8425696.4063055.5521435.7787846.6376614.9687596.0372046.4238625.4168406.473779...6.7691245.9166655.7304636.0620075.2475216.0268316.1861484.9167445.7833445.858384
SLC35E1\\79005_at6.7552486.8635175.4079586.5608896.8236355.7523906.2751846.9223056.1352646.556921...6.9442857.0873576.4062026.5700475.7826376.5762396.2175784.4893896.7096086.954185
CX3CL1\\823_at7.0008568.1208447.6872997.9486429.8265216.8244757.7143767.3937086.6681477.174337...8.4862368.2630254.9567728.0678227.6090977.5026257.0647546.1599948.5198058.358023
ABHD2\\87100_at6.1681896.0847984.8962916.5894295.6008144.3929015.3163125.8621073.8790396.096043...6.2690166.1648555.5998686.7445925.6855564.5861106.308516-0.1819666.1802456.764606
NPEPL1\\89476_r_at6.4189716.0519075.0190935.5935606.5051224.4938655.5179655.1613805.7083455.226532...6.8780265.4297636.3672595.6142335.7365816.5924665.2079445.6897725.2322815.482558
PCIF1\\89948_at5.3640266.1381124.9488484.3237236.0454825.0396084.9769685.2206204.5168225.959925...5.7767654.8936295.1627786.1537514.9892345.5403255.6405894.0554476.2228686.123076
ACSM5\\89977_at6.0358615.6475683.8609935.1295675.6835534.3806265.6772125.0376905.3374224.738941...5.4072475.2080415.4596384.9026674.2550325.8579885.8002115.0225906.0130675.190548
ADAP1\\90265_at7.3534127.7586106.5585117.3639077.8270196.5704137.3429017.5304776.7812817.498019...7.6141657.3083036.8565257.4943926.7458027.5522317.1880255.8870457.0785247.679227
LRCH4\\90610_at7.1598717.6716836.3694706.8717088.1517576.3145417.5068677.5188817.4419817.875706...7.8457607.0502407.5333847.5147696.8680827.8420866.9878216.5065887.8198927.507573
LRTM1\\91580_at-0.0452132.305463-0.8884052.4804442.5192650.0769692.9097562.373133-0.1366590.769416...1.106007-0.5975110.9444161.806609-0.5033600.5297610.8130070.5299012.5047913.410667
DGCR8\\91617_at5.9336795.6567025.0386564.7713896.5273895.0744936.2570415.5037726.2624205.602344...6.8915045.7160615.2168475.4657395.5713676.8383975.4205805.1157375.3756205.213588
EXOSC4\\91684_g_at5.2748585.7992273.8273725.4518385.2694674.3906955.3114705.5518484.4911935.099931...5.4259905.0128904.3385245.7459264.7443665.8160165.4715063.9577205.4131845.148300
EHBP1L1\\91703_at4.5333205.8806244.8536615.1544095.9031853.7765256.1017765.6524725.4744335.944109...7.0307555.2261773.8088796.1719935.6501306.8256205.8492715.0554785.8734224.268345
MEX3D\\91816_f_at5.7598146.3487035.1070485.5959395.5683614.8709965.9258976.5214313.9756396.333953...4.8450845.9259785.5867445.8504524.3928334.7195565.9551272.4082016.6454866.843783
EPS8L1\\91826_at3.6836525.6508974.4552294.6675975.8151604.6879735.9897075.3511124.8702415.790650...6.4014675.3787024.7982275.4491955.0545715.9607204.7009394.6278175.2763485.095823
BCAN\\91920_at6.5563676.2840614.9126645.4070675.5498115.3362445.8357605.8753994.0654265.422566...4.7096825.8158785.6159165.5143274.8321255.3590545.7111092.8487384.9355496.260592
DCAF15\\91952_at4.7614405.5595904.0802485.0476174.6568743.8600694.3501445.3776205.3645064.715751...5.9571554.7863194.9360254.9750395.3841225.5933455.2391424.7742134.9424864.566237
ACTB\\AFFX-HSAC07/X00351_3_at12.66827112.89252412.05621812.44202613.22618911.97239513.05877312.50859012.42100013.148745...13.09355112.44435512.62124813.17317112.62946413.12167612.77171612.26108713.17074812.697250
ACTB\\AFFX-HSAC07/X00351_5_at9.54366412.30108210.36392711.67556012.0789689.50260110.87867211.8736909.82681112.384859...11.44804411.15555210.80465511.68867911.06087211.45224112.0260158.37468712.50977011.545394
ACTB\\AFFX-HSAC07/X00351_M_at11.37661412.64129511.10478912.02156012.72121910.61999111.70108512.21178211.03107412.816704...12.37071211.80123511.84227212.24657711.98193812.48372312.35044510.38288312.87033212.232586
GAPDH\\AFFX-HUMGAPDH/M33197_3_at10.73647811.53683510.25417810.88616911.48266710.00691511.56413011.19439410.75203811.600006...11.42002310.77202611.22346511.43377811.04118712.44238410.94851310.17437611.57817911.132635
GAPDH\\AFFX-HUMGAPDH/M33197_5_at9.45712411.3166109.55249011.06953011.0947318.98792311.15941111.0730779.55507211.407443...10.60721910.16502011.17358311.03668210.09688610.91938510.9988377.64934211.65598710.999246
GAPDH\\AFFX-HUMGAPDH/M33197_M_at9.46616211.2247199.51805110.68995411.1226089.22679011.17876410.9644649.81347511.497612...10.90559010.10121410.99727811.17815410.21947111.70578810.7824418.80056011.65336510.750816
STAT1\\AFFX-HUMISGF3A/M97935_3_at9.3806529.6016047.9631628.96146110.2818498.11547010.1523369.5002038.6321199.396457...9.6170879.3941719.1706199.0262058.4095189.1672989.9406107.39053910.1068129.687306
STAT1\\AFFX-HUMISGF3A/M97935_5_at4.5234116.5510194.2136355.9764715.8986733.9056115.7177235.8485804.1895956.573391...5.3990755.3049534.8653006.2541013.7487833.0556217.1380462.6608747.6963905.819653
STAT1\\AFFX-HUMISGF3A/M97935_MA_at6.3757407.8187364.9016737.1812528.2288964.8250998.1035877.2064875.7171098.216882...6.6763806.9523806.7706447.8868675.7809775.1705868.0563073.4464559.0878397.762628
STAT1\\AFFX-HUMISGF3A/M97935_MB_at6.6111287.9578285.2974857.1587718.2530825.7251008.2557757.7085535.5014877.944800...6.4855527.1655606.4774917.3192935.4619156.2339658.3188054.0681468.7041187.600151
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42449 rows × 58 columns

\n", - "
" - ], - "text/plain": [ - " GSE8581GSM211008 GSE8581GSM210090 \\\n", - "RFC2\\1053_at 6.058559 6.628174 \n", - "HSPA6\\117_at 5.525270 6.183496 \n", - "PAX8\\121_at 7.654879 7.574253 \n", - "GUCA1A\\1255_g_at 2.806122 3.833214 \n", - "UBA7\\1294_at 6.925121 7.638935 \n", - "THRA\\1316_at 5.507227 5.076610 \n", - "PTPN21\\1320_at 4.222604 5.809080 \n", - "CCL5\\1405_i_at 7.915939 8.243574 \n", - "CYP2E1\\1431_at 4.154891 3.357805 \n", - "EPHB3\\1438_at 4.196741 4.436295 \n", - "ESRRA\\1487_at 6.554643 7.072663 \n", - "CYP2A6\\1494_f_at 5.142156 5.611748 \n", - "SCARB1\\1552256_a_at 6.621088 6.532015 \n", - "TTLL12\\1552257_a_at 6.548042 6.929436 \n", - "NCRNA00152\\1552258_at 5.466608 3.847446 \n", - "WFDC2\\1552261_at 4.636607 4.174422 \n", - "MAPK1\\1552263_at 6.050125 6.628676 \n", - "MAPK1\\1552264_a_at 6.435147 7.648221 \n", - "ADAM32\\1552266_at 3.866967 4.164489 \n", - "SPATA17\\1552269_at 1.377651 3.410802 \n", - "PRR22\\1552271_at 1.639371 0.912880 \n", - "PRR22\\1552272_a_at 3.175640 4.953903 \n", - "PXK\\1552274_at 8.012591 7.045345 \n", - "PXK\\1552275_s_at 5.994917 5.813874 \n", - "VPS18\\1552276_a_at 4.989021 3.347170 \n", - "C9orf30\\1552277_a_at 6.677410 6.729240 \n", - "SLC46A1\\1552278_a_at 5.416840 4.719479 \n", - "SLC46A1\\1552279_a_at 5.947430 6.237828 \n", - "TIMD4\\1552280_at 3.011245 0.595695 \n", - "SLC39A5\\1552281_at 3.879696 3.680459 \n", - "ZDHHC11\\1552283_s_at 5.915483 7.061895 \n", - "ATP6V1E2\\1552286_at 5.677700 4.459458 \n", - "AFG3L1P\\1552287_s_at 6.760021 6.949196 \n", - "CILP2\\1552288_at 0.973457 0.655636 \n", - "CILP2\\1552289_a_at 2.246004 4.657171 \n", - "PIGX\\1552291_at 6.398886 5.785590 \n", - "TMEM196\\1552293_at 2.441061 2.018858 \n", - "SLC39A13\\1552295_a_at 5.939986 6.881787 \n", - "BEST4\\1552296_at 0.982736 1.301008 \n", - "AKD1\\1552299_at 2.712356 4.931149 \n", - "CORO6\\1552301_a_at 5.507141 5.032855 \n", - "TMEM106A\\1552302_at 6.454470 5.467658 \n", - "TMEM106A\\1552303_a_at 6.064950 4.965780 \n", - "ALG10\\1552304_at 1.466110 4.332314 \n", - "ALG10\\1552306_at 4.420213 4.770718 \n", - "TTC39C\\1552307_a_at 5.438150 5.643490 \n", - "NEXN\\1552309_a_at 7.378858 7.202457 \n", - "C15orf40\\1552310_at 6.846894 6.749709 \n", - "RAX2\\1552311_a_at 6.010254 6.020933 \n", - "MFAP3\\1552312_a_at 4.924124 6.221891 \n", - "... ... ... \n", - "GPR153\\64942_at 6.993086 7.356100 \n", - "YIPF2\\65086_at 5.063499 5.729577 \n", - "INO80B\\65133_i_at 3.476926 4.676628 \n", - "KIAA1609\\65438_at 4.740604 4.319011 \n", - "C2orf68\\65472_at 6.390718 5.451429 \n", - "HEATR6\\65493_at 5.743283 5.569962 \n", - "AP1M2\\65517_at 5.015288 5.608247 \n", - "UBE2D4\\65521_at 6.575132 6.853322 \n", - "FAM86B1\\65585_at 5.048629 5.406554 \n", - "LOC388796\\65588_at 5.230683 6.563350 \n", - "WDR48\\65591_at 7.597732 7.827959 \n", - "TMEM80\\65630_at 6.527413 6.776301 \n", - "ENGASE\\65635_at 7.509118 7.599229 \n", - "GPR124\\65718_at 5.871964 6.323166 \n", - "RHOT2\\65770_at 4.979582 6.648681 \n", - "MAN1B1\\65884_at 6.331488 6.752802 \n", - "HNRNPUL2\\66053_at 4.598329 5.019680 \n", - "WNT6\\71933_at 6.242109 6.336960 \n", - "RABEP2\\74694_s_at 6.604790 6.728274 \n", - "FKBP15\\76897_s_at 3.263695 5.183022 \n", - "RABEP2\\77508_r_at 6.210724 6.233840 \n", - "ZNF335\\78330_at 4.319206 5.194225 \n", - "LOC100129250\\78383_at 6.091702 6.256379 \n", - "ZNF783\\78495_at 5.842569 6.406305 \n", - "SLC35E1\\79005_at 6.755248 6.863517 \n", - "CX3CL1\\823_at 7.000856 8.120844 \n", - "ABHD2\\87100_at 6.168189 6.084798 \n", - "NPEPL1\\89476_r_at 6.418971 6.051907 \n", - "PCIF1\\89948_at 5.364026 6.138112 \n", - "ACSM5\\89977_at 6.035861 5.647568 \n", - "ADAP1\\90265_at 7.353412 7.758610 \n", - "LRCH4\\90610_at 7.159871 7.671683 \n", - "LRTM1\\91580_at -0.045213 2.305463 \n", - "DGCR8\\91617_at 5.933679 5.656702 \n", - "EXOSC4\\91684_g_at 5.274858 5.799227 \n", - "EHBP1L1\\91703_at 4.533320 5.880624 \n", - "MEX3D\\91816_f_at 5.759814 6.348703 \n", - "EPS8L1\\91826_at 3.683652 5.650897 \n", - "BCAN\\91920_at 6.556367 6.284061 \n", - "DCAF15\\91952_at 4.761440 5.559590 \n", - "ACTB\\AFFX-HSAC07/X00351_3_at 12.668271 12.892524 \n", - "ACTB\\AFFX-HSAC07/X00351_5_at 9.543664 12.301082 \n", - "ACTB\\AFFX-HSAC07/X00351_M_at 11.376614 12.641295 \n", - "GAPDH\\AFFX-HUMGAPDH/M33197_3_at 10.736478 11.536835 \n", - "GAPDH\\AFFX-HUMGAPDH/M33197_5_at 9.457124 11.316610 \n", - "GAPDH\\AFFX-HUMGAPDH/M33197_M_at 9.466162 11.224719 \n", - "STAT1\\AFFX-HUMISGF3A/M97935_3_at 9.380652 9.601604 \n", - "STAT1\\AFFX-HUMISGF3A/M97935_5_at 4.523411 6.551019 \n", - "STAT1\\AFFX-HUMISGF3A/M97935_MA_at 6.375740 7.818736 \n", - "STAT1\\AFFX-HUMISGF3A/M97935_MB_at 6.611128 7.957828 \n", - "\n", - " GSE8581GSM210012 GSE8581GSM210007 \\\n", - "RFC2\\1053_at 4.562389 5.909300 \n", - "HSPA6\\117_at 3.890427 4.972518 \n", - "PAX8\\121_at 6.767946 7.132628 \n", - "GUCA1A\\1255_g_at 2.720823 2.347476 \n", - "UBA7\\1294_at 6.688460 7.147897 \n", - "THRA\\1316_at 4.425916 4.850564 \n", - "PTPN21\\1320_at 1.338824 5.115333 \n", - "CCL5\\1405_i_at 6.379110 6.678987 \n", - "CYP2E1\\1431_at 3.158138 3.709577 \n", - "EPHB3\\1438_at 3.904619 4.226115 \n", - "ESRRA\\1487_at 5.952893 6.697885 \n", - "CYP2A6\\1494_f_at 4.774956 5.436029 \n", - "SCARB1\\1552256_a_at 5.715723 5.982608 \n", - "TTLL12\\1552257_a_at 5.784661 6.408087 \n", - "NCRNA00152\\1552258_at 4.869304 4.965641 \n", - "WFDC2\\1552261_at 3.028599 1.097847 \n", - "MAPK1\\1552263_at 4.762822 5.855367 \n", - "MAPK1\\1552264_a_at 5.559596 7.094035 \n", - "ADAM32\\1552266_at 3.016275 4.212048 \n", - "SPATA17\\1552269_at 2.654862 3.060497 \n", - "PRR22\\1552271_at 0.846553 1.913753 \n", - "PRR22\\1552272_a_at 2.825607 4.498723 \n", - "PXK\\1552274_at 6.254634 6.997157 \n", - "PXK\\1552275_s_at 4.776136 5.659816 \n", - "VPS18\\1552276_a_at 3.863215 2.221893 \n", - "C9orf30\\1552277_a_at 5.952830 5.892522 \n", - "SLC46A1\\1552278_a_at 1.627317 4.941670 \n", - "SLC46A1\\1552279_a_at 4.770475 5.855895 \n", - "TIMD4\\1552280_at 2.276208 3.953349 \n", - "SLC39A5\\1552281_at 4.315378 3.090157 \n", - "ZDHHC11\\1552283_s_at 5.311812 7.467377 \n", - "ATP6V1E2\\1552286_at 1.863300 4.386804 \n", - "AFG3L1P\\1552287_s_at 5.865506 6.302829 \n", - "CILP2\\1552288_at 2.639404 3.367469 \n", - "CILP2\\1552289_a_at 2.489910 4.029488 \n", - "PIGX\\1552291_at 5.348367 5.735530 \n", - "TMEM196\\1552293_at 0.726692 1.974346 \n", - "SLC39A13\\1552295_a_at 5.677226 6.266228 \n", - "BEST4\\1552296_at 1.474597 3.397625 \n", - "AKD1\\1552299_at 0.839653 3.962623 \n", - "CORO6\\1552301_a_at 4.832232 4.800346 \n", - "TMEM106A\\1552302_at 5.675294 5.458658 \n", - "TMEM106A\\1552303_a_at 4.743380 5.294577 \n", - "ALG10\\1552304_at 0.147789 3.800548 \n", - "ALG10\\1552306_at 4.200300 4.390317 \n", - "TTC39C\\1552307_a_at 4.238221 5.108403 \n", - "NEXN\\1552309_a_at 7.409128 7.192766 \n", - "C15orf40\\1552310_at 5.036706 6.061573 \n", - "RAX2\\1552311_a_at 5.148816 4.711677 \n", - "MFAP3\\1552312_a_at 3.600329 5.018438 \n", - "... ... ... \n", - "GPR153\\64942_at 6.443327 6.881701 \n", - "YIPF2\\65086_at 4.912065 5.684339 \n", - "INO80B\\65133_i_at 4.179591 3.864374 \n", - "KIAA1609\\65438_at 2.261040 3.439317 \n", - "C2orf68\\65472_at 5.015961 5.080197 \n", - "HEATR6\\65493_at 4.909461 4.727888 \n", - "AP1M2\\65517_at 4.752877 5.681095 \n", - "UBE2D4\\65521_at 6.013668 6.279347 \n", - "FAM86B1\\65585_at 4.423128 5.250571 \n", - "LOC388796\\65588_at 5.286774 5.480679 \n", - "WDR48\\65591_at 6.405717 7.319753 \n", - "TMEM80\\65630_at 4.973754 6.306700 \n", - "ENGASE\\65635_at 6.554705 6.957148 \n", - "GPR124\\65718_at 5.790678 6.119107 \n", - "RHOT2\\65770_at 5.656542 6.623188 \n", - "MAN1B1\\65884_at 5.046666 6.131116 \n", - "HNRNPUL2\\66053_at 3.679052 4.660449 \n", - "WNT6\\71933_at 5.287908 6.132143 \n", - "RABEP2\\74694_s_at 5.916099 6.282486 \n", - "FKBP15\\76897_s_at 3.591859 4.970941 \n", - "RABEP2\\77508_r_at 5.156433 6.180957 \n", - "ZNF335\\78330_at 4.342064 4.251636 \n", - "LOC100129250\\78383_at 4.534030 5.458428 \n", - "ZNF783\\78495_at 5.552143 5.778784 \n", - "SLC35E1\\79005_at 5.407958 6.560889 \n", - "CX3CL1\\823_at 7.687299 7.948642 \n", - "ABHD2\\87100_at 4.896291 6.589429 \n", - "NPEPL1\\89476_r_at 5.019093 5.593560 \n", - "PCIF1\\89948_at 4.948848 4.323723 \n", - "ACSM5\\89977_at 3.860993 5.129567 \n", - "ADAP1\\90265_at 6.558511 7.363907 \n", - "LRCH4\\90610_at 6.369470 6.871708 \n", - "LRTM1\\91580_at -0.888405 2.480444 \n", - "DGCR8\\91617_at 5.038656 4.771389 \n", - "EXOSC4\\91684_g_at 3.827372 5.451838 \n", - "EHBP1L1\\91703_at 4.853661 5.154409 \n", - "MEX3D\\91816_f_at 5.107048 5.595939 \n", - "EPS8L1\\91826_at 4.455229 4.667597 \n", - "BCAN\\91920_at 4.912664 5.407067 \n", - "DCAF15\\91952_at 4.080248 5.047617 \n", - "ACTB\\AFFX-HSAC07/X00351_3_at 12.056218 12.442026 \n", - "ACTB\\AFFX-HSAC07/X00351_5_at 10.363927 11.675560 \n", - "ACTB\\AFFX-HSAC07/X00351_M_at 11.104789 12.021560 \n", - "GAPDH\\AFFX-HUMGAPDH/M33197_3_at 10.254178 10.886169 \n", - "GAPDH\\AFFX-HUMGAPDH/M33197_5_at 9.552490 11.069530 \n", - "GAPDH\\AFFX-HUMGAPDH/M33197_M_at 9.518051 10.689954 \n", - "STAT1\\AFFX-HUMISGF3A/M97935_3_at 7.963162 8.961461 \n", - "STAT1\\AFFX-HUMISGF3A/M97935_5_at 4.213635 5.976471 \n", - "STAT1\\AFFX-HUMISGF3A/M97935_MA_at 4.901673 7.181252 \n", - "STAT1\\AFFX-HUMISGF3A/M97935_MB_at 5.297485 7.158771 \n", - "\n", - " GSE8581GSM213019 GSE8581GSM210004 \\\n", - "RFC2\\1053_at 6.344207 4.861548 \n", - "HSPA6\\117_at 6.926581 4.127864 \n", - "PAX8\\121_at 7.290655 6.326811 \n", - "GUCA1A\\1255_g_at 2.606129 0.574305 \n", - "UBA7\\1294_at 8.091827 6.659511 \n", - "THRA\\1316_at 5.413780 4.823846 \n", - "PTPN21\\1320_at 5.778485 1.258640 \n", - "CCL5\\1405_i_at 8.205823 6.837590 \n", - "CYP2E1\\1431_at 4.667495 3.586200 \n", - "EPHB3\\1438_at 4.830316 3.510835 \n", - "ESRRA\\1487_at 7.096525 5.963733 \n", - "CYP2A6\\1494_f_at 5.768465 5.508010 \n", - "SCARB1\\1552256_a_at 6.941271 5.392826 \n", - "TTLL12\\1552257_a_at 7.021169 5.747624 \n", - "NCRNA00152\\1552258_at 5.256279 3.466105 \n", - "WFDC2\\1552261_at 2.829285 2.199924 \n", - "MAPK1\\1552263_at 6.164682 4.905375 \n", - "MAPK1\\1552264_a_at 6.636226 5.711429 \n", - "ADAM32\\1552266_at 3.569345 3.122795 \n", - "SPATA17\\1552269_at -0.462457 3.081082 \n", - "PRR22\\1552271_at 2.180192 3.234397 \n", - "PRR22\\1552272_a_at 4.351862 4.092503 \n", - "PXK\\1552274_at 6.471425 6.390833 \n", - "PXK\\1552275_s_at 6.270564 4.579784 \n", - "VPS18\\1552276_a_at 3.413905 2.992442 \n", - "C9orf30\\1552277_a_at 7.041210 5.787858 \n", - "SLC46A1\\1552278_a_at 4.594363 3.490660 \n", - "SLC46A1\\1552279_a_at 6.435909 4.709406 \n", - "TIMD4\\1552280_at 3.028716 3.234118 \n", - "SLC39A5\\1552281_at 4.378962 2.675832 \n", - "ZDHHC11\\1552283_s_at 6.908885 5.613700 \n", - "ATP6V1E2\\1552286_at 4.929403 3.726210 \n", - "AFG3L1P\\1552287_s_at 7.784033 5.839098 \n", - "CILP2\\1552288_at 1.312328 2.065472 \n", - "CILP2\\1552289_a_at 4.453215 3.819903 \n", - "PIGX\\1552291_at 6.189647 5.201250 \n", - "TMEM196\\1552293_at 1.914105 3.672538 \n", - "SLC39A13\\1552295_a_at 6.019544 5.125283 \n", - "BEST4\\1552296_at 4.042636 2.885133 \n", - "AKD1\\1552299_at 4.520642 3.038568 \n", - "CORO6\\1552301_a_at 5.477318 4.774386 \n", - "TMEM106A\\1552302_at 4.183645 5.513958 \n", - "TMEM106A\\1552303_a_at 5.496830 4.722630 \n", - "ALG10\\1552304_at 2.224241 0.155840 \n", - "ALG10\\1552306_at 3.580471 3.774840 \n", - "TTC39C\\1552307_a_at 5.996956 4.944081 \n", - "NEXN\\1552309_a_at 7.655488 6.483127 \n", - "C15orf40\\1552310_at 7.342573 5.232972 \n", - "RAX2\\1552311_a_at 4.944067 4.422435 \n", - "MFAP3\\1552312_a_at 5.403292 0.056681 \n", - "... ... ... \n", - "GPR153\\64942_at 7.296035 6.392972 \n", - "YIPF2\\65086_at 6.682784 5.032383 \n", - "INO80B\\65133_i_at 4.191357 3.137943 \n", - "KIAA1609\\65438_at 4.817429 3.157532 \n", - "C2orf68\\65472_at 6.826625 5.100713 \n", - "HEATR6\\65493_at 5.982854 4.597108 \n", - "AP1M2\\65517_at 5.568382 4.697635 \n", - "UBE2D4\\65521_at 6.786531 5.653734 \n", - "FAM86B1\\65585_at 6.194513 4.273135 \n", - "LOC388796\\65588_at 6.935271 4.037523 \n", - "WDR48\\65591_at 7.884189 6.083894 \n", - "TMEM80\\65630_at 7.201105 5.892493 \n", - "ENGASE\\65635_at 8.053546 6.583999 \n", - "GPR124\\65718_at 6.736429 5.892323 \n", - "RHOT2\\65770_at 6.868526 5.517591 \n", - "MAN1B1\\65884_at 6.902592 5.575088 \n", - "HNRNPUL2\\66053_at 5.014395 3.298908 \n", - "WNT6\\71933_at 5.854746 5.378293 \n", - "RABEP2\\74694_s_at 6.937380 5.955915 \n", - "FKBP15\\76897_s_at 2.833756 2.285941 \n", - "RABEP2\\77508_r_at 6.148531 5.273874 \n", - "ZNF335\\78330_at 5.004029 3.982619 \n", - "LOC100129250\\78383_at 6.376309 5.352158 \n", - "ZNF783\\78495_at 6.637661 4.968759 \n", - "SLC35E1\\79005_at 6.823635 5.752390 \n", - "CX3CL1\\823_at 9.826521 6.824475 \n", - "ABHD2\\87100_at 5.600814 4.392901 \n", - "NPEPL1\\89476_r_at 6.505122 4.493865 \n", - "PCIF1\\89948_at 6.045482 5.039608 \n", - "ACSM5\\89977_at 5.683553 4.380626 \n", - "ADAP1\\90265_at 7.827019 6.570413 \n", - "LRCH4\\90610_at 8.151757 6.314541 \n", - "LRTM1\\91580_at 2.519265 0.076969 \n", - "DGCR8\\91617_at 6.527389 5.074493 \n", - "EXOSC4\\91684_g_at 5.269467 4.390695 \n", - "EHBP1L1\\91703_at 5.903185 3.776525 \n", - "MEX3D\\91816_f_at 5.568361 4.870996 \n", - "EPS8L1\\91826_at 5.815160 4.687973 \n", - "BCAN\\91920_at 5.549811 5.336244 \n", - "DCAF15\\91952_at 4.656874 3.860069 \n", - "ACTB\\AFFX-HSAC07/X00351_3_at 13.226189 11.972395 \n", - "ACTB\\AFFX-HSAC07/X00351_5_at 12.078968 9.502601 \n", - "ACTB\\AFFX-HSAC07/X00351_M_at 12.721219 10.619991 \n", - "GAPDH\\AFFX-HUMGAPDH/M33197_3_at 11.482667 10.006915 \n", - "GAPDH\\AFFX-HUMGAPDH/M33197_5_at 11.094731 8.987923 \n", - "GAPDH\\AFFX-HUMGAPDH/M33197_M_at 11.122608 9.226790 \n", - "STAT1\\AFFX-HUMISGF3A/M97935_3_at 10.281849 8.115470 \n", - "STAT1\\AFFX-HUMISGF3A/M97935_5_at 5.898673 3.905611 \n", - "STAT1\\AFFX-HUMISGF3A/M97935_MA_at 8.228896 4.825099 \n", - "STAT1\\AFFX-HUMISGF3A/M97935_MB_at 8.253082 5.725100 \n", - "\n", - " GSE8581GSM212853 GSE8581GSM210087 \\\n", - "RFC2\\1053_at 5.954592 6.093057 \n", - "HSPA6\\117_at 6.609622 6.505572 \n", - "PAX8\\121_at 7.025638 7.475563 \n", - "GUCA1A\\1255_g_at 2.841842 2.339571 \n", - "UBA7\\1294_at 7.834477 7.521208 \n", - "THRA\\1316_at 4.239245 4.781748 \n", - "PTPN21\\1320_at 5.429599 5.592209 \n", - "CCL5\\1405_i_at 8.387319 8.056762 \n", - "CYP2E1\\1431_at 4.817383 4.014248 \n", - "EPHB3\\1438_at 4.890067 4.386611 \n", - "ESRRA\\1487_at 6.930643 6.639522 \n", - "CYP2A6\\1494_f_at 5.461401 5.524813 \n", - "SCARB1\\1552256_a_at 6.221577 6.160575 \n", - "TTLL12\\1552257_a_at 5.921729 6.864520 \n", - "NCRNA00152\\1552258_at 3.841138 4.534404 \n", - "WFDC2\\1552261_at 3.798216 4.072680 \n", - "MAPK1\\1552263_at 6.305086 6.406952 \n", - "MAPK1\\1552264_a_at 6.796831 7.263185 \n", - "ADAM32\\1552266_at 4.157973 1.005960 \n", - "SPATA17\\1552269_at 3.454031 2.305804 \n", - "PRR22\\1552271_at 1.826335 0.656945 \n", - "PRR22\\1552272_a_at 3.702015 2.980104 \n", - "PXK\\1552274_at 6.393620 6.968264 \n", - "PXK\\1552275_s_at 6.114954 6.508555 \n", - "VPS18\\1552276_a_at 2.674088 2.535092 \n", - "C9orf30\\1552277_a_at 6.389383 6.817188 \n", - "SLC46A1\\1552278_a_at 4.646520 3.366126 \n", - "SLC46A1\\1552279_a_at 6.123861 6.250886 \n", - "TIMD4\\1552280_at 3.835530 4.309402 \n", - "SLC39A5\\1552281_at 3.082778 4.804198 \n", - "ZDHHC11\\1552283_s_at 8.290042 6.176101 \n", - "ATP6V1E2\\1552286_at 5.106997 4.808210 \n", - "AFG3L1P\\1552287_s_at 7.168522 6.617181 \n", - "CILP2\\1552288_at 1.596983 1.784165 \n", - "CILP2\\1552289_a_at 2.787094 2.200394 \n", - "PIGX\\1552291_at 5.705433 6.236380 \n", - "TMEM196\\1552293_at 2.733632 3.735089 \n", - "SLC39A13\\1552295_a_at 5.648572 6.821302 \n", - "BEST4\\1552296_at 2.230197 1.129876 \n", - "AKD1\\1552299_at 3.117565 4.284973 \n", - "CORO6\\1552301_a_at 5.666524 4.865186 \n", - "TMEM106A\\1552302_at 4.842315 5.064723 \n", - "TMEM106A\\1552303_a_at 5.513314 5.582782 \n", - "ALG10\\1552304_at -0.011918 1.490734 \n", - "ALG10\\1552306_at 0.577886 4.298570 \n", - "TTC39C\\1552307_a_at 5.085858 4.970371 \n", - "NEXN\\1552309_a_at 7.719984 7.798757 \n", - "C15orf40\\1552310_at 6.805576 6.712871 \n", - "RAX2\\1552311_a_at 5.989954 5.289023 \n", - "MFAP3\\1552312_a_at 4.966398 5.863832 \n", - "... ... ... \n", - "GPR153\\64942_at 6.753631 7.162522 \n", - "YIPF2\\65086_at 6.563488 6.215945 \n", - "INO80B\\65133_i_at 4.638062 4.766224 \n", - "KIAA1609\\65438_at 3.914096 3.926626 \n", - "C2orf68\\65472_at 6.535059 5.725902 \n", - "HEATR6\\65493_at 5.292826 5.078379 \n", - "AP1M2\\65517_at 5.025069 5.411884 \n", - "UBE2D4\\65521_at 6.462278 6.997134 \n", - "FAM86B1\\65585_at 6.007707 4.820807 \n", - "LOC388796\\65588_at 5.817813 5.660914 \n", - "WDR48\\65591_at 7.442131 7.693954 \n", - "TMEM80\\65630_at 6.657583 6.774405 \n", - "ENGASE\\65635_at 7.215785 7.580108 \n", - "GPR124\\65718_at 6.528537 6.476759 \n", - "RHOT2\\65770_at 6.087319 6.567754 \n", - "MAN1B1\\65884_at 6.503276 6.071595 \n", - "HNRNPUL2\\66053_at 4.211534 5.347871 \n", - "WNT6\\71933_at 5.423827 6.398267 \n", - "RABEP2\\74694_s_at 6.934045 6.309458 \n", - "FKBP15\\76897_s_at 3.991817 4.429054 \n", - "RABEP2\\77508_r_at 5.853529 6.003332 \n", - "ZNF335\\78330_at 4.337019 4.340975 \n", - "LOC100129250\\78383_at 6.307869 6.252418 \n", - "ZNF783\\78495_at 6.037204 6.423862 \n", - "SLC35E1\\79005_at 6.275184 6.922305 \n", - "CX3CL1\\823_at 7.714376 7.393708 \n", - "ABHD2\\87100_at 5.316312 5.862107 \n", - "NPEPL1\\89476_r_at 5.517965 5.161380 \n", - "PCIF1\\89948_at 4.976968 5.220620 \n", - "ACSM5\\89977_at 5.677212 5.037690 \n", - "ADAP1\\90265_at 7.342901 7.530477 \n", - "LRCH4\\90610_at 7.506867 7.518881 \n", - "LRTM1\\91580_at 2.909756 2.373133 \n", - "DGCR8\\91617_at 6.257041 5.503772 \n", - "EXOSC4\\91684_g_at 5.311470 5.551848 \n", - "EHBP1L1\\91703_at 6.101776 5.652472 \n", - "MEX3D\\91816_f_at 5.925897 6.521431 \n", - "EPS8L1\\91826_at 5.989707 5.351112 \n", - "BCAN\\91920_at 5.835760 5.875399 \n", - "DCAF15\\91952_at 4.350144 5.377620 \n", - "ACTB\\AFFX-HSAC07/X00351_3_at 13.058773 12.508590 \n", - "ACTB\\AFFX-HSAC07/X00351_5_at 10.878672 11.873690 \n", - "ACTB\\AFFX-HSAC07/X00351_M_at 11.701085 12.211782 \n", - "GAPDH\\AFFX-HUMGAPDH/M33197_3_at 11.564130 11.194394 \n", - "GAPDH\\AFFX-HUMGAPDH/M33197_5_at 11.159411 11.073077 \n", - "GAPDH\\AFFX-HUMGAPDH/M33197_M_at 11.178764 10.964464 \n", - "STAT1\\AFFX-HUMISGF3A/M97935_3_at 10.152336 9.500203 \n", - "STAT1\\AFFX-HUMISGF3A/M97935_5_at 5.717723 5.848580 \n", - "STAT1\\AFFX-HUMISGF3A/M97935_MA_at 8.103587 7.206487 \n", - "STAT1\\AFFX-HUMISGF3A/M97935_MB_at 8.255775 7.708553 \n", - "\n", - " GSE8581GSM212787 GSE8581GSM213034 \\\n", - "RFC2\\1053_at 4.694841 6.424759 \n", - "HSPA6\\117_at 4.911198 5.821440 \n", - "PAX8\\121_at 5.771326 7.026767 \n", - "GUCA1A\\1255_g_at 1.158227 2.000959 \n", - "UBA7\\1294_at 7.512906 7.592001 \n", - "THRA\\1316_at 3.523988 5.045312 \n", - "PTPN21\\1320_at 3.643672 5.753281 \n", - "CCL5\\1405_i_at 8.052209 7.551285 \n", - "CYP2E1\\1431_at 3.548572 4.266157 \n", - "EPHB3\\1438_at 3.607579 4.303963 \n", - "ESRRA\\1487_at 6.660980 7.129479 \n", - "CYP2A6\\1494_f_at 4.214715 6.745466 \n", - "SCARB1\\1552256_a_at 6.651210 6.383858 \n", - "TTLL12\\1552257_a_at 6.243928 6.443451 \n", - "NCRNA00152\\1552258_at 4.985860 5.622081 \n", - "WFDC2\\1552261_at 3.167087 3.982273 \n", - "MAPK1\\1552263_at 5.315555 6.315934 \n", - "MAPK1\\1552264_a_at 5.800206 7.020035 \n", - "ADAM32\\1552266_at 3.398036 1.801846 \n", - "SPATA17\\1552269_at -0.108959 1.662511 \n", - "PRR22\\1552271_at 1.256395 1.232808 \n", - "PRR22\\1552272_a_at 3.155370 3.624124 \n", - "PXK\\1552274_at 6.241928 6.352654 \n", - "PXK\\1552275_s_at 4.279991 6.366775 \n", - "VPS18\\1552276_a_at 3.952958 4.968243 \n", - "C9orf30\\1552277_a_at 5.126341 6.659425 \n", - "SLC46A1\\1552278_a_at 3.178270 4.914789 \n", - "SLC46A1\\1552279_a_at 5.109427 6.221452 \n", - "TIMD4\\1552280_at 4.236301 1.833744 \n", - "SLC39A5\\1552281_at 3.595539 3.007707 \n", - "ZDHHC11\\1552283_s_at 6.739524 4.919631 \n", - "ATP6V1E2\\1552286_at 4.490429 4.490005 \n", - "AFG3L1P\\1552287_s_at 6.530514 7.368646 \n", - "CILP2\\1552288_at -0.357722 0.858180 \n", - "CILP2\\1552289_a_at 3.257501 4.792861 \n", - "PIGX\\1552291_at 4.313652 5.726518 \n", - "TMEM196\\1552293_at 0.353820 2.733213 \n", - "SLC39A13\\1552295_a_at 5.320889 6.255087 \n", - "BEST4\\1552296_at 1.619868 2.958288 \n", - "AKD1\\1552299_at 0.420725 3.272617 \n", - "CORO6\\1552301_a_at 4.482958 4.901128 \n", - "TMEM106A\\1552302_at 6.658097 4.751935 \n", - "TMEM106A\\1552303_a_at 4.450802 4.864072 \n", - "ALG10\\1552304_at 3.097329 3.367231 \n", - "ALG10\\1552306_at 2.065831 4.004726 \n", - "TTC39C\\1552307_a_at 3.705912 5.556077 \n", - "NEXN\\1552309_a_at 5.866191 7.127757 \n", - "C15orf40\\1552310_at 5.763964 6.738862 \n", - "RAX2\\1552311_a_at 4.614745 4.118999 \n", - "MFAP3\\1552312_a_at 2.430020 5.426540 \n", - "... ... ... \n", - "GPR153\\64942_at 6.095203 7.225506 \n", - "YIPF2\\65086_at 5.244130 6.505889 \n", - "INO80B\\65133_i_at 4.457227 4.263455 \n", - "KIAA1609\\65438_at 3.507414 4.279404 \n", - "C2orf68\\65472_at 4.886457 5.903884 \n", - "HEATR6\\65493_at 4.759044 5.737952 \n", - "AP1M2\\65517_at 4.904605 5.834709 \n", - "UBE2D4\\65521_at 5.314341 7.116282 \n", - "FAM86B1\\65585_at 4.662627 6.018554 \n", - "LOC388796\\65588_at 4.476336 6.621256 \n", - "WDR48\\65591_at 5.300666 7.808906 \n", - "TMEM80\\65630_at 5.141604 6.640374 \n", - "ENGASE\\65635_at 7.218636 7.206663 \n", - "GPR124\\65718_at 5.037018 5.856993 \n", - "RHOT2\\65770_at 5.881271 6.476688 \n", - "MAN1B1\\65884_at 6.390592 6.409104 \n", - "HNRNPUL2\\66053_at 3.040533 4.145050 \n", - "WNT6\\71933_at 4.029621 5.859915 \n", - "RABEP2\\74694_s_at 6.926735 6.693041 \n", - "FKBP15\\76897_s_at 4.315899 5.580519 \n", - "RABEP2\\77508_r_at 5.060648 5.879838 \n", - "ZNF335\\78330_at 3.282724 4.485485 \n", - "LOC100129250\\78383_at 4.932935 6.165904 \n", - "ZNF783\\78495_at 5.416840 6.473779 \n", - "SLC35E1\\79005_at 6.135264 6.556921 \n", - "CX3CL1\\823_at 6.668147 7.174337 \n", - "ABHD2\\87100_at 3.879039 6.096043 \n", - "NPEPL1\\89476_r_at 5.708345 5.226532 \n", - "PCIF1\\89948_at 4.516822 5.959925 \n", - "ACSM5\\89977_at 5.337422 4.738941 \n", - "ADAP1\\90265_at 6.781281 7.498019 \n", - "LRCH4\\90610_at 7.441981 7.875706 \n", - "LRTM1\\91580_at -0.136659 0.769416 \n", - "DGCR8\\91617_at 6.262420 5.602344 \n", - "EXOSC4\\91684_g_at 4.491193 5.099931 \n", - "EHBP1L1\\91703_at 5.474433 5.944109 \n", - "MEX3D\\91816_f_at 3.975639 6.333953 \n", - "EPS8L1\\91826_at 4.870241 5.790650 \n", - "BCAN\\91920_at 4.065426 5.422566 \n", - "DCAF15\\91952_at 5.364506 4.715751 \n", - "ACTB\\AFFX-HSAC07/X00351_3_at 12.421000 13.148745 \n", - "ACTB\\AFFX-HSAC07/X00351_5_at 9.826811 12.384859 \n", - "ACTB\\AFFX-HSAC07/X00351_M_at 11.031074 12.816704 \n", - "GAPDH\\AFFX-HUMGAPDH/M33197_3_at 10.752038 11.600006 \n", - "GAPDH\\AFFX-HUMGAPDH/M33197_5_at 9.555072 11.407443 \n", - "GAPDH\\AFFX-HUMGAPDH/M33197_M_at 9.813475 11.497612 \n", - "STAT1\\AFFX-HUMISGF3A/M97935_3_at 8.632119 9.396457 \n", - "STAT1\\AFFX-HUMISGF3A/M97935_5_at 4.189595 6.573391 \n", - "STAT1\\AFFX-HUMISGF3A/M97935_MA_at 5.717109 8.216882 \n", - "STAT1\\AFFX-HUMISGF3A/M97935_MB_at 5.501487 7.944800 \n", - "\n", - " ... GSE8581GSM211872 \\\n", - "RFC2\\1053_at ... 6.066016 \n", - "HSPA6\\117_at ... 6.796143 \n", - "PAX8\\121_at ... 6.834408 \n", - "GUCA1A\\1255_g_at ... 1.105986 \n", - "UBA7\\1294_at ... 8.227900 \n", - "THRA\\1316_at ... 4.883704 \n", - "PTPN21\\1320_at ... 5.103447 \n", - "CCL5\\1405_i_at ... 8.727597 \n", - "CYP2E1\\1431_at ... 4.391142 \n", - "EPHB3\\1438_at ... 5.201689 \n", - "ESRRA\\1487_at ... 7.276766 \n", - "CYP2A6\\1494_f_at ... 5.668766 \n", - "SCARB1\\1552256_a_at ... 7.726497 \n", - "TTLL12\\1552257_a_at ... 7.436412 \n", - "NCRNA00152\\1552258_at ... 4.137085 \n", - "WFDC2\\1552261_at ... 5.281568 \n", - "MAPK1\\1552263_at ... 6.744336 \n", - "MAPK1\\1552264_a_at ... 6.947152 \n", - "ADAM32\\1552266_at ... 3.822598 \n", - "SPATA17\\1552269_at ... 4.146052 \n", - "PRR22\\1552271_at ... 2.547943 \n", - "PRR22\\1552272_a_at ... 4.144063 \n", - "PXK\\1552274_at ... 7.166515 \n", - "PXK\\1552275_s_at ... 6.328194 \n", - "VPS18\\1552276_a_at ... 4.446997 \n", - "C9orf30\\1552277_a_at ... 6.500734 \n", - "SLC46A1\\1552278_a_at ... 4.992424 \n", - "SLC46A1\\1552279_a_at ... 6.037804 \n", - "TIMD4\\1552280_at ... 4.688259 \n", - "SLC39A5\\1552281_at ... 5.033106 \n", - "ZDHHC11\\1552283_s_at ... 8.695350 \n", - "ATP6V1E2\\1552286_at ... 5.216199 \n", - "AFG3L1P\\1552287_s_at ... 8.309176 \n", - "CILP2\\1552288_at ... 2.321365 \n", - "CILP2\\1552289_a_at ... 1.908494 \n", - "PIGX\\1552291_at ... 5.674430 \n", - "TMEM196\\1552293_at ... 3.910003 \n", - "SLC39A13\\1552295_a_at ... 7.026424 \n", - "BEST4\\1552296_at ... 3.573714 \n", - "AKD1\\1552299_at ... 3.556626 \n", - "CORO6\\1552301_a_at ... 5.454683 \n", - "TMEM106A\\1552302_at ... 6.258896 \n", - "TMEM106A\\1552303_a_at ... 5.519410 \n", - "ALG10\\1552304_at ... 0.136257 \n", - "ALG10\\1552306_at ... 3.416313 \n", - "TTC39C\\1552307_a_at ... 5.241524 \n", - "NEXN\\1552309_a_at ... 8.120704 \n", - "C15orf40\\1552310_at ... 7.199270 \n", - "RAX2\\1552311_a_at ... 5.216777 \n", - "MFAP3\\1552312_a_at ... 5.006967 \n", - "... ... ... \n", - "GPR153\\64942_at ... 7.857788 \n", - "YIPF2\\65086_at ... 6.389902 \n", - "INO80B\\65133_i_at ... 5.350547 \n", - "KIAA1609\\65438_at ... 4.947947 \n", - "C2orf68\\65472_at ... 6.562131 \n", - "HEATR6\\65493_at ... 6.092085 \n", - "AP1M2\\65517_at ... 6.367425 \n", - "UBE2D4\\65521_at ... 6.501350 \n", - "FAM86B1\\65585_at ... 6.930039 \n", - "LOC388796\\65588_at ... 6.744767 \n", - "WDR48\\65591_at ... 7.020947 \n", - "TMEM80\\65630_at ... 7.105144 \n", - "ENGASE\\65635_at ... 8.719577 \n", - "GPR124\\65718_at ... 6.084247 \n", - "RHOT2\\65770_at ... 7.211518 \n", - "MAN1B1\\65884_at ... 7.259724 \n", - "HNRNPUL2\\66053_at ... 4.721176 \n", - "WNT6\\71933_at ... 5.187942 \n", - "RABEP2\\74694_s_at ... 7.684026 \n", - "FKBP15\\76897_s_at ... 4.311677 \n", - "RABEP2\\77508_r_at ... 6.190767 \n", - "ZNF335\\78330_at ... 4.572126 \n", - "LOC100129250\\78383_at ... 5.853826 \n", - "ZNF783\\78495_at ... 6.769124 \n", - "SLC35E1\\79005_at ... 6.944285 \n", - "CX3CL1\\823_at ... 8.486236 \n", - "ABHD2\\87100_at ... 6.269016 \n", - "NPEPL1\\89476_r_at ... 6.878026 \n", - "PCIF1\\89948_at ... 5.776765 \n", - "ACSM5\\89977_at ... 5.407247 \n", - "ADAP1\\90265_at ... 7.614165 \n", - "LRCH4\\90610_at ... 7.845760 \n", - "LRTM1\\91580_at ... 1.106007 \n", - "DGCR8\\91617_at ... 6.891504 \n", - "EXOSC4\\91684_g_at ... 5.425990 \n", - "EHBP1L1\\91703_at ... 7.030755 \n", - "MEX3D\\91816_f_at ... 4.845084 \n", - "EPS8L1\\91826_at ... 6.401467 \n", - "BCAN\\91920_at ... 4.709682 \n", - "DCAF15\\91952_at ... 5.957155 \n", - "ACTB\\AFFX-HSAC07/X00351_3_at ... 13.093551 \n", - "ACTB\\AFFX-HSAC07/X00351_5_at ... 11.448044 \n", - "ACTB\\AFFX-HSAC07/X00351_M_at ... 12.370712 \n", - "GAPDH\\AFFX-HUMGAPDH/M33197_3_at ... 11.420023 \n", - "GAPDH\\AFFX-HUMGAPDH/M33197_5_at ... 10.607219 \n", - "GAPDH\\AFFX-HUMGAPDH/M33197_M_at ... 10.905590 \n", - "STAT1\\AFFX-HUMISGF3A/M97935_3_at ... 9.617087 \n", - "STAT1\\AFFX-HUMISGF3A/M97935_5_at ... 5.399075 \n", - "STAT1\\AFFX-HUMISGF3A/M97935_MA_at ... 6.676380 \n", - "STAT1\\AFFX-HUMISGF3A/M97935_MB_at ... 6.485552 \n", - "\n", - " GSE8581GSM210010 GSE8581GSM210993 \\\n", - "RFC2\\1053_at 5.905481 5.134780 \n", - "HSPA6\\117_at 5.475442 5.751681 \n", - "PAX8\\121_at 7.078375 7.358616 \n", - "GUCA1A\\1255_g_at 2.280074 4.166274 \n", - "UBA7\\1294_at 7.033269 5.884652 \n", - "THRA\\1316_at 5.465090 5.280871 \n", - "PTPN21\\1320_at 5.009074 2.437489 \n", - "CCL5\\1405_i_at 7.585931 6.393638 \n", - "CYP2E1\\1431_at 4.277754 4.500075 \n", - "EPHB3\\1438_at 4.371489 4.771622 \n", - "ESRRA\\1487_at 6.927505 6.137282 \n", - "CYP2A6\\1494_f_at 4.871760 5.403864 \n", - "SCARB1\\1552256_a_at 5.858697 6.224391 \n", - "TTLL12\\1552257_a_at 6.816305 6.293444 \n", - "NCRNA00152\\1552258_at 4.981465 4.846739 \n", - "WFDC2\\1552261_at 4.187142 3.328233 \n", - "MAPK1\\1552263_at 5.687864 6.028421 \n", - "MAPK1\\1552264_a_at 6.595196 6.232511 \n", - "ADAM32\\1552266_at 3.357721 3.669038 \n", - "SPATA17\\1552269_at 0.452964 3.592852 \n", - "PRR22\\1552271_at 0.874466 2.430523 \n", - "PRR22\\1552272_a_at 4.478195 3.567996 \n", - "PXK\\1552274_at 7.303023 7.867680 \n", - "PXK\\1552275_s_at 4.669497 5.784439 \n", - "VPS18\\1552276_a_at 2.221521 2.190074 \n", - "C9orf30\\1552277_a_at 6.441673 6.522582 \n", - "SLC46A1\\1552278_a_at 4.849144 4.901731 \n", - "SLC46A1\\1552279_a_at 5.800108 6.378723 \n", - "TIMD4\\1552280_at 3.971203 6.495326 \n", - "SLC39A5\\1552281_at 3.898808 5.064301 \n", - "ZDHHC11\\1552283_s_at 5.229265 4.631221 \n", - "ATP6V1E2\\1552286_at 3.484125 3.273382 \n", - "AFG3L1P\\1552287_s_at 6.627861 5.904409 \n", - "CILP2\\1552288_at 3.417583 5.420944 \n", - "CILP2\\1552289_a_at 4.308834 6.504908 \n", - "PIGX\\1552291_at 5.912111 5.529374 \n", - "TMEM196\\1552293_at 2.212021 2.920272 \n", - "SLC39A13\\1552295_a_at 5.992639 5.933707 \n", - "BEST4\\1552296_at -1.143631 1.238377 \n", - "AKD1\\1552299_at 4.067527 2.316343 \n", - "CORO6\\1552301_a_at 5.132063 5.680535 \n", - "TMEM106A\\1552302_at 6.259948 5.988639 \n", - "TMEM106A\\1552303_a_at 5.895962 5.127121 \n", - "ALG10\\1552304_at 1.333687 1.311474 \n", - "ALG10\\1552306_at 4.521993 4.329899 \n", - "TTC39C\\1552307_a_at 5.021253 5.620164 \n", - "NEXN\\1552309_a_at 7.102007 8.363802 \n", - "C15orf40\\1552310_at 6.042053 6.219939 \n", - "RAX2\\1552311_a_at 4.792595 5.708951 \n", - "MFAP3\\1552312_a_at 4.405700 5.985867 \n", - "... ... ... \n", - "GPR153\\64942_at 6.945912 7.068789 \n", - "YIPF2\\65086_at 5.971785 6.377394 \n", - "INO80B\\65133_i_at 4.135781 4.439816 \n", - "KIAA1609\\65438_at 4.493647 3.796971 \n", - "C2orf68\\65472_at 5.286648 5.106897 \n", - "HEATR6\\65493_at 5.579974 4.641922 \n", - "AP1M2\\65517_at 5.761554 3.049296 \n", - "UBE2D4\\65521_at 6.557242 6.630612 \n", - "FAM86B1\\65585_at 4.978406 4.497101 \n", - "LOC388796\\65588_at 5.898341 5.001640 \n", - "WDR48\\65591_at 7.087229 7.317431 \n", - "TMEM80\\65630_at 6.295547 5.598806 \n", - "ENGASE\\65635_at 7.239742 6.701230 \n", - "GPR124\\65718_at 6.263113 5.973637 \n", - "RHOT2\\65770_at 5.945383 4.966477 \n", - "MAN1B1\\65884_at 6.188057 5.730308 \n", - "HNRNPUL2\\66053_at 5.102289 3.614086 \n", - "WNT6\\71933_at 6.061480 6.455873 \n", - "RABEP2\\74694_s_at 6.319067 5.919562 \n", - "FKBP15\\76897_s_at 4.714801 3.421210 \n", - "RABEP2\\77508_r_at 5.677745 6.440009 \n", - "ZNF335\\78330_at 4.664858 4.200912 \n", - "LOC100129250\\78383_at 5.725100 6.400745 \n", - "ZNF783\\78495_at 5.916665 5.730463 \n", - "SLC35E1\\79005_at 7.087357 6.406202 \n", - "CX3CL1\\823_at 8.263025 4.956772 \n", - "ABHD2\\87100_at 6.164855 5.599868 \n", - "NPEPL1\\89476_r_at 5.429763 6.367259 \n", - "PCIF1\\89948_at 4.893629 5.162778 \n", - "ACSM5\\89977_at 5.208041 5.459638 \n", - "ADAP1\\90265_at 7.308303 6.856525 \n", - "LRCH4\\90610_at 7.050240 7.533384 \n", - "LRTM1\\91580_at -0.597511 0.944416 \n", - "DGCR8\\91617_at 5.716061 5.216847 \n", - "EXOSC4\\91684_g_at 5.012890 4.338524 \n", - "EHBP1L1\\91703_at 5.226177 3.808879 \n", - "MEX3D\\91816_f_at 5.925978 5.586744 \n", - "EPS8L1\\91826_at 5.378702 4.798227 \n", - "BCAN\\91920_at 5.815878 5.615916 \n", - "DCAF15\\91952_at 4.786319 4.936025 \n", - "ACTB\\AFFX-HSAC07/X00351_3_at 12.444355 12.621248 \n", - "ACTB\\AFFX-HSAC07/X00351_5_at 11.155552 10.804655 \n", - "ACTB\\AFFX-HSAC07/X00351_M_at 11.801235 11.842272 \n", - "GAPDH\\AFFX-HUMGAPDH/M33197_3_at 10.772026 11.223465 \n", - "GAPDH\\AFFX-HUMGAPDH/M33197_5_at 10.165020 11.173583 \n", - "GAPDH\\AFFX-HUMGAPDH/M33197_M_at 10.101214 10.997278 \n", - "STAT1\\AFFX-HUMISGF3A/M97935_3_at 9.394171 9.170619 \n", - "STAT1\\AFFX-HUMISGF3A/M97935_5_at 5.304953 4.865300 \n", - "STAT1\\AFFX-HUMISGF3A/M97935_MA_at 6.952380 6.770644 \n", - "STAT1\\AFFX-HUMISGF3A/M97935_MB_at 7.165560 6.477491 \n", - "\n", - " GSE8581GSM213035 GSE8581GSM212809 \\\n", - "RFC2\\1053_at 5.646880 5.244427 \n", - "HSPA6\\117_at 6.448078 5.324566 \n", - "PAX8\\121_at 6.541902 6.015049 \n", - "GUCA1A\\1255_g_at 1.022240 3.324191 \n", - "UBA7\\1294_at 7.690871 7.115720 \n", - "THRA\\1316_at 4.977958 4.272538 \n", - "PTPN21\\1320_at 5.470970 3.514476 \n", - "CCL5\\1405_i_at 7.883456 7.701750 \n", - "CYP2E1\\1431_at 3.593031 3.786743 \n", - "EPHB3\\1438_at 4.232661 5.124105 \n", - "ESRRA\\1487_at 6.625973 6.472723 \n", - "CYP2A6\\1494_f_at 5.567116 4.451600 \n", - "SCARB1\\1552256_a_at 6.052085 6.355851 \n", - "TTLL12\\1552257_a_at 6.402072 5.855153 \n", - "NCRNA00152\\1552258_at 3.831026 4.581092 \n", - "WFDC2\\1552261_at 4.332264 4.107244 \n", - "MAPK1\\1552263_at 5.760048 5.859058 \n", - "MAPK1\\1552264_a_at 7.070336 5.958511 \n", - "ADAM32\\1552266_at -0.064653 4.138937 \n", - "SPATA17\\1552269_at 4.477988 2.993515 \n", - "PRR22\\1552271_at 0.124183 1.236346 \n", - "PRR22\\1552272_a_at 3.892517 3.352533 \n", - "PXK\\1552274_at 6.859361 6.424744 \n", - "PXK\\1552275_s_at 6.079581 4.071814 \n", - "VPS18\\1552276_a_at 0.695014 1.583177 \n", - "C9orf30\\1552277_a_at 5.837310 6.156188 \n", - "SLC46A1\\1552278_a_at 3.025217 3.648155 \n", - "SLC46A1\\1552279_a_at 5.332754 5.176071 \n", - "TIMD4\\1552280_at 1.527301 -1.350795 \n", - "SLC39A5\\1552281_at 5.319416 4.841354 \n", - "ZDHHC11\\1552283_s_at 5.766449 7.591814 \n", - "ATP6V1E2\\1552286_at 4.509088 3.299245 \n", - "AFG3L1P\\1552287_s_at 6.770591 6.704844 \n", - "CILP2\\1552288_at 2.214973 0.731722 \n", - "CILP2\\1552289_a_at 4.219548 1.576343 \n", - "PIGX\\1552291_at 4.645609 5.036486 \n", - "TMEM196\\1552293_at 1.872486 0.052012 \n", - "SLC39A13\\1552295_a_at 6.154555 5.922272 \n", - "BEST4\\1552296_at 1.810928 2.919535 \n", - "AKD1\\1552299_at 4.029250 2.588349 \n", - "CORO6\\1552301_a_at 4.967118 4.597531 \n", - "TMEM106A\\1552302_at 5.647631 5.561222 \n", - "TMEM106A\\1552303_a_at 5.174906 5.150271 \n", - "ALG10\\1552304_at 0.257578 3.550679 \n", - "ALG10\\1552306_at 3.137946 3.154026 \n", - "TTC39C\\1552307_a_at 4.878912 4.180959 \n", - "NEXN\\1552309_a_at 8.118053 6.900637 \n", - "C15orf40\\1552310_at 5.826848 6.250649 \n", - "RAX2\\1552311_a_at 4.668443 1.690538 \n", - "MFAP3\\1552312_a_at 5.580465 3.213878 \n", - "... ... ... \n", - "GPR153\\64942_at 6.377927 6.263196 \n", - "YIPF2\\65086_at 6.212715 3.851609 \n", - "INO80B\\65133_i_at 4.022971 4.622626 \n", - "KIAA1609\\65438_at 4.246591 3.361909 \n", - "C2orf68\\65472_at 5.842343 5.041668 \n", - "HEATR6\\65493_at 5.003975 5.083115 \n", - "AP1M2\\65517_at 4.800211 5.423578 \n", - "UBE2D4\\65521_at 6.992904 5.490025 \n", - "FAM86B1\\65585_at 5.619982 5.304329 \n", - "LOC388796\\65588_at 6.066539 5.388317 \n", - "WDR48\\65591_at 7.634942 5.720500 \n", - "TMEM80\\65630_at 5.850447 5.534942 \n", - "ENGASE\\65635_at 7.141167 6.775182 \n", - "GPR124\\65718_at 5.980473 5.114671 \n", - "RHOT2\\65770_at 6.399489 5.896802 \n", - "MAN1B1\\65884_at 6.036848 6.365532 \n", - "HNRNPUL2\\66053_at 4.884569 2.446140 \n", - "WNT6\\71933_at 5.301606 4.411908 \n", - "RABEP2\\74694_s_at 6.670968 6.570387 \n", - "FKBP15\\76897_s_at 4.483564 3.384381 \n", - "RABEP2\\77508_r_at 4.953898 5.432776 \n", - "ZNF335\\78330_at 4.378768 4.122350 \n", - "LOC100129250\\78383_at 6.345909 5.195501 \n", - "ZNF783\\78495_at 6.062007 5.247521 \n", - "SLC35E1\\79005_at 6.570047 5.782637 \n", - "CX3CL1\\823_at 8.067822 7.609097 \n", - "ABHD2\\87100_at 6.744592 5.685556 \n", - "NPEPL1\\89476_r_at 5.614233 5.736581 \n", - "PCIF1\\89948_at 6.153751 4.989234 \n", - "ACSM5\\89977_at 4.902667 4.255032 \n", - "ADAP1\\90265_at 7.494392 6.745802 \n", - "LRCH4\\90610_at 7.514769 6.868082 \n", - "LRTM1\\91580_at 1.806609 -0.503360 \n", - "DGCR8\\91617_at 5.465739 5.571367 \n", - "EXOSC4\\91684_g_at 5.745926 4.744366 \n", - "EHBP1L1\\91703_at 6.171993 5.650130 \n", - "MEX3D\\91816_f_at 5.850452 4.392833 \n", - "EPS8L1\\91826_at 5.449195 5.054571 \n", - "BCAN\\91920_at 5.514327 4.832125 \n", - "DCAF15\\91952_at 4.975039 5.384122 \n", - "ACTB\\AFFX-HSAC07/X00351_3_at 13.173171 12.629464 \n", - "ACTB\\AFFX-HSAC07/X00351_5_at 11.688679 11.060872 \n", - "ACTB\\AFFX-HSAC07/X00351_M_at 12.246577 11.981938 \n", - "GAPDH\\AFFX-HUMGAPDH/M33197_3_at 11.433778 11.041187 \n", - "GAPDH\\AFFX-HUMGAPDH/M33197_5_at 11.036682 10.096886 \n", - "GAPDH\\AFFX-HUMGAPDH/M33197_M_at 11.178154 10.219471 \n", - "STAT1\\AFFX-HUMISGF3A/M97935_3_at 9.026205 8.409518 \n", - "STAT1\\AFFX-HUMISGF3A/M97935_5_at 6.254101 3.748783 \n", - "STAT1\\AFFX-HUMISGF3A/M97935_MA_at 7.886867 5.780977 \n", - "STAT1\\AFFX-HUMISGF3A/M97935_MB_at 7.319293 5.461915 \n", - "\n", - " GSE8581GSM212789 GSE8581GSM210193 \\\n", - "RFC2\\1053_at 5.984300 5.643239 \n", - "HSPA6\\117_at 7.467165 5.967609 \n", - "PAX8\\121_at 6.419503 7.504303 \n", - "GUCA1A\\1255_g_at 1.416613 2.964582 \n", - "UBA7\\1294_at 7.895818 7.473925 \n", - "THRA\\1316_at 5.040397 5.035136 \n", - "PTPN21\\1320_at 4.340470 5.343703 \n", - "CCL5\\1405_i_at 8.371372 8.442259 \n", - "CYP2E1\\1431_at 3.590123 4.704335 \n", - "EPHB3\\1438_at 5.591045 4.101667 \n", - "ESRRA\\1487_at 7.572010 6.765349 \n", - "CYP2A6\\1494_f_at 4.801588 4.491398 \n", - "SCARB1\\1552256_a_at 7.383661 6.460171 \n", - "TTLL12\\1552257_a_at 7.072074 6.739740 \n", - "NCRNA00152\\1552258_at 4.272859 4.906607 \n", - "WFDC2\\1552261_at 4.344899 3.903443 \n", - "MAPK1\\1552263_at 6.473224 5.779877 \n", - "MAPK1\\1552264_a_at 6.476455 7.253753 \n", - "ADAM32\\1552266_at 3.713531 3.242516 \n", - "SPATA17\\1552269_at 0.813779 -0.002920 \n", - "PRR22\\1552271_at 1.932624 1.424906 \n", - "PRR22\\1552272_a_at 4.039437 2.096161 \n", - "PXK\\1552274_at 6.101480 7.027309 \n", - "PXK\\1552275_s_at 5.320813 5.764505 \n", - "VPS18\\1552276_a_at 3.596732 1.482884 \n", - "C9orf30\\1552277_a_at 6.789351 6.738754 \n", - "SLC46A1\\1552278_a_at 5.219091 4.877519 \n", - "SLC46A1\\1552279_a_at 6.075990 5.627397 \n", - "TIMD4\\1552280_at 4.521855 2.970714 \n", - "SLC39A5\\1552281_at 4.434114 4.938770 \n", - "ZDHHC11\\1552283_s_at 7.879865 6.942432 \n", - "ATP6V1E2\\1552286_at 4.072432 5.225734 \n", - "AFG3L1P\\1552287_s_at 7.490859 6.464640 \n", - "CILP2\\1552288_at 3.864028 1.035159 \n", - "CILP2\\1552289_a_at 4.522527 4.563286 \n", - "PIGX\\1552291_at 6.570572 6.024515 \n", - "TMEM196\\1552293_at 2.922438 1.051358 \n", - "SLC39A13\\1552295_a_at 6.401001 6.254093 \n", - "BEST4\\1552296_at 1.544411 -0.287501 \n", - "AKD1\\1552299_at 4.278676 4.633472 \n", - "CORO6\\1552301_a_at 5.241882 4.750998 \n", - "TMEM106A\\1552302_at 7.208439 5.299725 \n", - "TMEM106A\\1552303_a_at 6.081859 5.529384 \n", - "ALG10\\1552304_at 1.646223 3.171297 \n", - "ALG10\\1552306_at 3.468583 4.022865 \n", - "TTC39C\\1552307_a_at 5.594095 5.204219 \n", - "NEXN\\1552309_a_at 8.563021 7.838939 \n", - "C15orf40\\1552310_at 6.595660 6.117489 \n", - "RAX2\\1552311_a_at 5.039353 5.676516 \n", - "MFAP3\\1552312_a_at 4.337005 6.002496 \n", - "... ... ... \n", - "GPR153\\64942_at 7.405975 7.323379 \n", - "YIPF2\\65086_at 6.369863 5.500984 \n", - "INO80B\\65133_i_at 4.659548 4.518995 \n", - "KIAA1609\\65438_at 5.039173 3.702635 \n", - "C2orf68\\65472_at 6.038252 5.818309 \n", - "HEATR6\\65493_at 5.738798 5.503670 \n", - "AP1M2\\65517_at 6.285077 5.053168 \n", - "UBE2D4\\65521_at 6.448988 6.777735 \n", - "FAM86B1\\65585_at 6.234934 5.056930 \n", - "LOC388796\\65588_at 6.265013 5.748225 \n", - "WDR48\\65591_at 6.278764 7.972268 \n", - "TMEM80\\65630_at 6.964895 6.498149 \n", - "ENGASE\\65635_at 7.788431 7.456034 \n", - "GPR124\\65718_at 5.417937 6.191134 \n", - "RHOT2\\65770_at 6.928536 6.491851 \n", - "MAN1B1\\65884_at 7.343825 6.521668 \n", - "HNRNPUL2\\66053_at 2.622902 4.764925 \n", - "WNT6\\71933_at 4.356348 6.101484 \n", - "RABEP2\\74694_s_at 7.475920 6.534314 \n", - "FKBP15\\76897_s_at -0.927751 4.803769 \n", - "RABEP2\\77508_r_at 5.783098 6.119097 \n", - "ZNF335\\78330_at 1.441409 4.563524 \n", - "LOC100129250\\78383_at 5.701918 5.736472 \n", - "ZNF783\\78495_at 6.026831 6.186148 \n", - "SLC35E1\\79005_at 6.576239 6.217578 \n", - "CX3CL1\\823_at 7.502625 7.064754 \n", - "ABHD2\\87100_at 4.586110 6.308516 \n", - "NPEPL1\\89476_r_at 6.592466 5.207944 \n", - "PCIF1\\89948_at 5.540325 5.640589 \n", - "ACSM5\\89977_at 5.857988 5.800211 \n", - "ADAP1\\90265_at 7.552231 7.188025 \n", - "LRCH4\\90610_at 7.842086 6.987821 \n", - "LRTM1\\91580_at 0.529761 0.813007 \n", - "DGCR8\\91617_at 6.838397 5.420580 \n", - "EXOSC4\\91684_g_at 5.816016 5.471506 \n", - "EHBP1L1\\91703_at 6.825620 5.849271 \n", - "MEX3D\\91816_f_at 4.719556 5.955127 \n", - "EPS8L1\\91826_at 5.960720 4.700939 \n", - "BCAN\\91920_at 5.359054 5.711109 \n", - "DCAF15\\91952_at 5.593345 5.239142 \n", - "ACTB\\AFFX-HSAC07/X00351_3_at 13.121676 12.771716 \n", - "ACTB\\AFFX-HSAC07/X00351_5_at 11.452241 12.026015 \n", - "ACTB\\AFFX-HSAC07/X00351_M_at 12.483723 12.350445 \n", - "GAPDH\\AFFX-HUMGAPDH/M33197_3_at 12.442384 10.948513 \n", - "GAPDH\\AFFX-HUMGAPDH/M33197_5_at 10.919385 10.998837 \n", - "GAPDH\\AFFX-HUMGAPDH/M33197_M_at 11.705788 10.782441 \n", - "STAT1\\AFFX-HUMISGF3A/M97935_3_at 9.167298 9.940610 \n", - "STAT1\\AFFX-HUMISGF3A/M97935_5_at 3.055621 7.138046 \n", - "STAT1\\AFFX-HUMISGF3A/M97935_MA_at 5.170586 8.056307 \n", - "STAT1\\AFFX-HUMISGF3A/M97935_MB_at 6.233965 8.318805 \n", - "\n", - " GSE8581GSM212788 GSE8581GSM213020 \\\n", - "RFC2\\1053_at 3.862293 5.997776 \n", - "HSPA6\\117_at 4.895438 6.066022 \n", - "PAX8\\121_at 4.544745 7.023655 \n", - "GUCA1A\\1255_g_at 3.085465 1.716556 \n", - "UBA7\\1294_at 6.884293 7.816222 \n", - "THRA\\1316_at 4.109026 4.537750 \n", - "PTPN21\\1320_at 1.236621 6.098420 \n", - "CCL5\\1405_i_at 7.741265 8.842203 \n", - "CYP2E1\\1431_at 3.341075 3.943021 \n", - "EPHB3\\1438_at -0.037999 4.283262 \n", - "ESRRA\\1487_at 5.719715 6.876013 \n", - "CYP2A6\\1494_f_at 4.065960 5.371092 \n", - "SCARB1\\1552256_a_at 5.701749 6.703281 \n", - "TTLL12\\1552257_a_at 4.822363 6.444175 \n", - "NCRNA00152\\1552258_at 2.975054 4.960544 \n", - "WFDC2\\1552261_at 3.253507 3.495030 \n", - "MAPK1\\1552263_at 4.788326 6.651411 \n", - "MAPK1\\1552264_a_at 3.097604 7.384361 \n", - "ADAM32\\1552266_at 0.553361 3.533040 \n", - "SPATA17\\1552269_at -0.320182 0.638593 \n", - "PRR22\\1552271_at 1.304832 1.405530 \n", - "PRR22\\1552272_a_at 0.315624 3.148967 \n", - "PXK\\1552274_at 4.126081 6.255994 \n", - "PXK\\1552275_s_at 1.639894 6.689816 \n", - "VPS18\\1552276_a_at 3.945486 2.467462 \n", - "C9orf30\\1552277_a_at 4.817731 5.968812 \n", - "SLC46A1\\1552278_a_at 3.657800 2.219652 \n", - "SLC46A1\\1552279_a_at 3.482913 4.904922 \n", - "TIMD4\\1552280_at 3.829038 3.705137 \n", - "SLC39A5\\1552281_at 2.985652 1.666220 \n", - "ZDHHC11\\1552283_s_at 4.890165 7.800000 \n", - "ATP6V1E2\\1552286_at 3.872386 4.481409 \n", - "AFG3L1P\\1552287_s_at 6.132639 7.153957 \n", - "CILP2\\1552288_at 3.730075 0.938835 \n", - "CILP2\\1552289_a_at 4.468453 2.600332 \n", - "PIGX\\1552291_at 3.821965 5.040068 \n", - "TMEM196\\1552293_at 0.619357 2.051483 \n", - "SLC39A13\\1552295_a_at 4.616605 6.498926 \n", - "BEST4\\1552296_at 0.587778 0.717605 \n", - "AKD1\\1552299_at 2.159419 4.685183 \n", - "CORO6\\1552301_a_at 4.100700 4.918997 \n", - "TMEM106A\\1552302_at 5.274601 3.922911 \n", - "TMEM106A\\1552303_a_at 3.745173 5.345258 \n", - "ALG10\\1552304_at 3.163813 0.458382 \n", - "ALG10\\1552306_at 3.291219 3.630988 \n", - "TTC39C\\1552307_a_at 3.480511 5.352621 \n", - "NEXN\\1552309_a_at 5.384689 7.399624 \n", - "C15orf40\\1552310_at 4.467195 6.877168 \n", - "RAX2\\1552311_a_at 3.661430 4.036530 \n", - "MFAP3\\1552312_a_at -0.193028 6.408547 \n", - "... ... ... \n", - "GPR153\\64942_at 5.243566 7.067348 \n", - "YIPF2\\65086_at 4.228596 6.036503 \n", - "INO80B\\65133_i_at 2.984783 4.621161 \n", - "KIAA1609\\65438_at 3.280452 3.923083 \n", - "C2orf68\\65472_at 3.616558 5.987166 \n", - "HEATR6\\65493_at 4.383967 5.132770 \n", - "AP1M2\\65517_at 3.144903 5.058892 \n", - "UBE2D4\\65521_at 4.297844 6.786309 \n", - "FAM86B1\\65585_at 3.706420 5.555598 \n", - "LOC388796\\65588_at 4.572993 6.192121 \n", - "WDR48\\65591_at 3.844436 7.939109 \n", - "TMEM80\\65630_at 4.703898 6.489299 \n", - "ENGASE\\65635_at 6.641757 7.430335 \n", - "GPR124\\65718_at 4.683803 6.452437 \n", - "RHOT2\\65770_at 5.566678 6.214865 \n", - "MAN1B1\\65884_at 5.823342 6.584791 \n", - "HNRNPUL2\\66053_at 1.723371 4.732622 \n", - "WNT6\\71933_at 2.443050 5.928463 \n", - "RABEP2\\74694_s_at 5.833940 6.610507 \n", - "FKBP15\\76897_s_at -0.179510 4.771674 \n", - "RABEP2\\77508_r_at 4.891113 5.948321 \n", - "ZNF335\\78330_at 2.701048 4.051494 \n", - "LOC100129250\\78383_at 4.355806 6.525123 \n", - "ZNF783\\78495_at 4.916744 5.783344 \n", - "SLC35E1\\79005_at 4.489389 6.709608 \n", - "CX3CL1\\823_at 6.159994 8.519805 \n", - "ABHD2\\87100_at -0.181966 6.180245 \n", - "NPEPL1\\89476_r_at 5.689772 5.232281 \n", - "PCIF1\\89948_at 4.055447 6.222868 \n", - "ACSM5\\89977_at 5.022590 6.013067 \n", - "ADAP1\\90265_at 5.887045 7.078524 \n", - "LRCH4\\90610_at 6.506588 7.819892 \n", - "LRTM1\\91580_at 0.529901 2.504791 \n", - "DGCR8\\91617_at 5.115737 5.375620 \n", - "EXOSC4\\91684_g_at 3.957720 5.413184 \n", - "EHBP1L1\\91703_at 5.055478 5.873422 \n", - "MEX3D\\91816_f_at 2.408201 6.645486 \n", - "EPS8L1\\91826_at 4.627817 5.276348 \n", - "BCAN\\91920_at 2.848738 4.935549 \n", - "DCAF15\\91952_at 4.774213 4.942486 \n", - "ACTB\\AFFX-HSAC07/X00351_3_at 12.261087 13.170748 \n", - "ACTB\\AFFX-HSAC07/X00351_5_at 8.374687 12.509770 \n", - "ACTB\\AFFX-HSAC07/X00351_M_at 10.382883 12.870332 \n", - "GAPDH\\AFFX-HUMGAPDH/M33197_3_at 10.174376 11.578179 \n", - "GAPDH\\AFFX-HUMGAPDH/M33197_5_at 7.649342 11.655987 \n", - "GAPDH\\AFFX-HUMGAPDH/M33197_M_at 8.800560 11.653365 \n", - "STAT1\\AFFX-HUMISGF3A/M97935_3_at 7.390539 10.106812 \n", - "STAT1\\AFFX-HUMISGF3A/M97935_5_at 2.660874 7.696390 \n", - "STAT1\\AFFX-HUMISGF3A/M97935_MA_at 3.446455 9.087839 \n", - "STAT1\\AFFX-HUMISGF3A/M97935_MB_at 4.068146 8.704118 \n", - "\n", - " GSE8581GSM210978 \n", - "RFC2\\1053_at 6.102358 \n", - "HSPA6\\117_at 5.568853 \n", - "PAX8\\121_at 7.669296 \n", - "GUCA1A\\1255_g_at 3.326336 \n", - "UBA7\\1294_at 6.723149 \n", - "THRA\\1316_at 5.747471 \n", - "PTPN21\\1320_at 5.547922 \n", - "CCL5\\1405_i_at 6.860901 \n", - "CYP2E1\\1431_at 4.867452 \n", - "EPHB3\\1438_at 4.303284 \n", - "ESRRA\\1487_at 6.687033 \n", - "CYP2A6\\1494_f_at 5.426708 \n", - "SCARB1\\1552256_a_at 5.623554 \n", - "TTLL12\\1552257_a_at 6.689467 \n", - "NCRNA00152\\1552258_at 5.418419 \n", - "WFDC2\\1552261_at 2.094962 \n", - "MAPK1\\1552263_at 6.781596 \n", - "MAPK1\\1552264_a_at 7.260393 \n", - "ADAM32\\1552266_at 4.079890 \n", - "SPATA17\\1552269_at 0.446722 \n", - "PRR22\\1552271_at 1.988656 \n", - "PRR22\\1552272_a_at 5.147136 \n", - "PXK\\1552274_at 8.018417 \n", - "PXK\\1552275_s_at 6.328073 \n", - "VPS18\\1552276_a_at 4.737622 \n", - "C9orf30\\1552277_a_at 6.831345 \n", - "SLC46A1\\1552278_a_at 1.710085 \n", - "SLC46A1\\1552279_a_at 6.353636 \n", - "TIMD4\\1552280_at 1.563641 \n", - "SLC39A5\\1552281_at 3.580387 \n", - "ZDHHC11\\1552283_s_at 4.615399 \n", - "ATP6V1E2\\1552286_at 4.960136 \n", - "AFG3L1P\\1552287_s_at 5.973981 \n", - "CILP2\\1552288_at 3.225406 \n", - "CILP2\\1552289_a_at 4.047154 \n", - "PIGX\\1552291_at 6.483890 \n", - "TMEM196\\1552293_at 2.915943 \n", - "SLC39A13\\1552295_a_at 6.135094 \n", - "BEST4\\1552296_at 0.702436 \n", - "AKD1\\1552299_at 5.289687 \n", - "CORO6\\1552301_a_at 5.498704 \n", - "TMEM106A\\1552302_at 5.670311 \n", - "TMEM106A\\1552303_a_at 5.793316 \n", - "ALG10\\1552304_at 3.120926 \n", - "ALG10\\1552306_at 4.785723 \n", - "TTC39C\\1552307_a_at 4.797475 \n", - "NEXN\\1552309_a_at 8.523507 \n", - "C15orf40\\1552310_at 6.433564 \n", - "RAX2\\1552311_a_at 5.519293 \n", - "MFAP3\\1552312_a_at 6.253379 \n", - "... ... \n", - "GPR153\\64942_at 7.035690 \n", - "YIPF2\\65086_at 5.896250 \n", - "INO80B\\65133_i_at 3.318190 \n", - "KIAA1609\\65438_at 3.776799 \n", - "C2orf68\\65472_at 5.923565 \n", - "HEATR6\\65493_at 5.441649 \n", - "AP1M2\\65517_at 4.476732 \n", - "UBE2D4\\65521_at 6.897567 \n", - "FAM86B1\\65585_at 3.894760 \n", - "LOC388796\\65588_at 5.323954 \n", - "WDR48\\65591_at 7.744370 \n", - "TMEM80\\65630_at 6.097097 \n", - "ENGASE\\65635_at 7.567059 \n", - "GPR124\\65718_at 5.947844 \n", - "RHOT2\\65770_at 5.773669 \n", - "MAN1B1\\65884_at 5.802803 \n", - "HNRNPUL2\\66053_at 4.419229 \n", - "WNT6\\71933_at 6.729403 \n", - "RABEP2\\74694_s_at 6.051250 \n", - "FKBP15\\76897_s_at 4.025977 \n", - "RABEP2\\77508_r_at 6.117479 \n", - "ZNF335\\78330_at 4.539903 \n", - "LOC100129250\\78383_at 6.154697 \n", - "ZNF783\\78495_at 5.858384 \n", - "SLC35E1\\79005_at 6.954185 \n", - "CX3CL1\\823_at 8.358023 \n", - "ABHD2\\87100_at 6.764606 \n", - "NPEPL1\\89476_r_at 5.482558 \n", - "PCIF1\\89948_at 6.123076 \n", - "ACSM5\\89977_at 5.190548 \n", - "ADAP1\\90265_at 7.679227 \n", - "LRCH4\\90610_at 7.507573 \n", - "LRTM1\\91580_at 3.410667 \n", - "DGCR8\\91617_at 5.213588 \n", - "EXOSC4\\91684_g_at 5.148300 \n", - "EHBP1L1\\91703_at 4.268345 \n", - "MEX3D\\91816_f_at 6.843783 \n", - "EPS8L1\\91826_at 5.095823 \n", - "BCAN\\91920_at 6.260592 \n", - "DCAF15\\91952_at 4.566237 \n", - "ACTB\\AFFX-HSAC07/X00351_3_at 12.697250 \n", - "ACTB\\AFFX-HSAC07/X00351_5_at 11.545394 \n", - "ACTB\\AFFX-HSAC07/X00351_M_at 12.232586 \n", - "GAPDH\\AFFX-HUMGAPDH/M33197_3_at 11.132635 \n", - "GAPDH\\AFFX-HUMGAPDH/M33197_5_at 10.999246 \n", - "GAPDH\\AFFX-HUMGAPDH/M33197_M_at 10.750816 \n", - "STAT1\\AFFX-HUMISGF3A/M97935_3_at 9.687306 \n", - "STAT1\\AFFX-HUMISGF3A/M97935_5_at 5.819653 \n", - "STAT1\\AFFX-HUMISGF3A/M97935_MA_at 7.762628 \n", - "STAT1\\AFFX-HUMISGF3A/M97935_MB_at 7.600151 \n", - "\n", - "[42449 rows x 58 columns]" - ] - }, - "execution_count": 17, - "metadata": {}, - "output_type": "execute_result" - } - ], + "outputs": [], "source": [ "from pandas import DataFrame\n", "\n", @@ -6494,43 +302,26 @@ }, { "cell_type": "code", - "execution_count": 28, + "execution_count": null, "metadata": { "collapsed": false, "deletable": true, "editable": true }, - "outputs": [ - { - "name": "stdout", - "output_type": "stream", - "text": [ - "The rpy2.ipython extension is already loaded. To reload it, use:\n", - " %reload_ext rpy2.ipython\n" - ] - } - ], + "outputs": [], "source": [ "%load_ext rpy2.ipython" ] }, { "cell_type": "code", - "execution_count": 29, + "execution_count": null, "metadata": { "collapsed": false, "deletable": true, "editable": true }, - "outputs": [ - { - "data": { - "image/png": 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c6pwwJWnKlCk6i0jZSMASAtqMAZva37x5UzBemytXLnWqT58+5iW+kwAJJCKA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\nGEmfPn2y9/Bi9Ahgbunrr78ugwcPVlHQGA/OmjVr9CpkyUE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controltreatment
subject.inTrialId
GSE8581GSM211008TrueFalse
GSE8581GSM210090FalseFalse
GSE8581GSM210012FalseFalse
GSE8581GSM210007FalseFalse
GSE8581GSM213019FalseFalse
GSE8581GSM210004FalseTrue
GSE8581GSM212853TrueFalse
GSE8581GSM210087TrueFalse
GSE8581GSM212787TrueFalse
GSE8581GSM213034FalseFalse
GSE8581GSM211007FalseTrue
GSE8581GSM212067TrueFalse
GSE8581GSM212850FalseFalse
GSE8581GSM211009FalseTrue
GSE8581GSM213018FalseFalse
GSE8581GSM212075FalseTrue
GSE8581GSM212074FalseTrue
GSE8581GSM212852FalseTrue
GSE8581GSM210014TrueFalse
GSE8581GSM213036TrueFalse
GSE8581GSM210194FalseTrue
GSE8581GSM210011FalseTrue
GSE8581GSM212849FalseFalse
GSE8581GSM212848FalseTrue
GSE8581GSM210979TrueFalse
GSE8581GSM210005TrueFalse
GSE8581GSM212854FalseFalse
GSE8581GSM212070TrueFalse
GSE8581GSM210006FalseTrue
GSE8581GSM212790TrueFalse
GSE8581GSM210009TrueFalse
GSE8581GSM211865FalseFalse
GSE8581GSM212855FalseFalse
GSE8581GSM212810FalseTrue
GSE8581GSM210196TrueFalse
GSE8581GSM210015TrueFalse
GSE8581GSM210994FalseFalse
GSE8581GSM210992FalseTrue
GSE8581GSM212068TrueFalse
GSE8581GSM211010FalseFalse
GSE8581GSM210192TrueFalse
GSE8581GSM213017FalseFalse
GSE8581GSM212811TrueFalse
GSE8581GSM212069FalseFalse
GSE8581GSM213037FalseFalse
GSE8581GSM210008FalseTrue
GSE8581GSM210071FalseTrue
GSE8581GSM210188FalseFalse
GSE8581GSM211872FalseFalse
GSE8581GSM210010FalseFalse
GSE8581GSM210993FalseTrue
GSE8581GSM213035TrueFalse
GSE8581GSM212809FalseFalse
GSE8581GSM212789TrueFalse
GSE8581GSM210193FalseFalse
GSE8581GSM212788FalseTrue
GSE8581GSM213020FalseTrue
GSE8581GSM210978FalseFalse
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0KIAA1377\\235956_at0.8791850.5760890.566838-4.598590
1ZNF358\\226260_x_at0.5169990.4819060.631730-4.599110
2GPR135\\214503_x_at-0.037486-0.1055170.916339-4.600272
3GPATCH2\\242224_at0.2455950.2158200.829904-4.600085
4RPL24\\214143_x_at1.0121770.3642210.717050-4.599632
5PALM2\\1554640_at0.1981670.1657970.868907-4.600186
6LOC339316\\242084_at0.0016820.0030890.997546-4.600330
7FECH\\203115_at0.8957030.7075610.482120-4.597713
8KCNJ9\\207527_at0.1482500.1829650.855479-4.600154
9C21orf96\\220918_at0.2862740.2416790.809902-4.600023
10SAT2\\225272_at0.7852650.4359540.664528-4.599331
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12CBLB\\208348_s_at0.3769080.5756430.567137-4.598593
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14UGGT1\\218257_s_at0.2200180.1754890.861321-4.600168
15LOC283585\\1561442_at-0.028199-0.0338700.973100-4.600324
16EMP2\\204975_at1.1870150.4687820.641025-4.599176
17LHFP\\218656_s_at1.0006030.4747850.636767-4.599146
18SNCAIP\\237834_at0.0565200.0795460.936879-4.600297
19RDH8\\220683_at-0.150771-0.1535810.878486-4.600206
20SRSF4\\239512_at0.3123020.1840590.854625-4.600152
21ACTB\\213867_x_at0.6855200.2389040.812043-4.600030
22FAM182B\\215487_x_at0.4071090.5048310.615637-4.598992
23C6orf108\\213871_s_at-0.018360-0.0287880.977135-4.600326
24CSRNP2\\225042_s_at0.4018340.2907460.772308-4.599885
25SLCO2B1\\203473_at0.7299650.3639530.717249-4.599633
26MYNN\\237510_at-0.254418-0.2846900.776921-4.599904
27NAP1L1\\208752_x_at0.8327060.3526840.725635-4.599676
28ADAM28\\205997_at0.7502910.6353620.527752-4.598216
29LOC100507248\\235236_at-0.428787-0.5802830.564026-4.598565
30PHF8\\238837_at0.0851340.1636290.870606-4.600189
31C9orf96\\1554787_at-0.182682-0.2585920.796888-4.599978
32TNPO2\\210585_s_at0.6023120.7664520.446591-4.597263
33FLJ31485\\239569_at0.4620340.4828680.631051-4.599106
34PUM1\\201164_s_at0.7719070.3931780.695665-4.599517
35COX4I1\\202698_x_at0.8899040.3651760.716341-4.599629
36IZUMO4\\215734_at0.5517180.5572490.579554-4.598701
37TPSAB1\\216485_s_at0.3044210.5811780.563427-4.598559
38LMAN1L\\220420_at-0.878393-1.6472690.105043-4.586668
39LY6K\\223687_s_at0.6681650.7229640.472678-4.597598
40ACAD10\\238655_at0.1023280.0986040.921801-4.600279
41TIMM22\\219184_x_at0.5028210.3705800.712333-4.599608
42HUS1\\217618_x_at0.1018510.0843760.933055-4.600293
43EPHA7\\206852_at0.2243320.3185970.751204-4.599796
44CSH1\\208069_x_at0.4526541.0878830.281256-4.594215
45FMNL2\\242665_at0.8143790.6344940.528314-4.598222
46PUS3\\221277_s_at0.7063150.4723980.638458-4.599158
47CELF4\\231220_at0.3076430.6005010.550569-4.598440
48RBM6\\228030_at0.5820320.2911140.772028-4.599884
49AVIL\\233333_x_at0.2893930.2052240.838133-4.600109
..................
42399MON1B\\233557_s_at0.3567620.2390270.811948-4.600029
42400CLLU1\\1558185_at0.2951500.4472770.656382-4.599279
42401KTN1\\214709_s_at0.8874510.4013900.689644-4.599483
42402KRTAP4-7\\216810_at-0.367947-0.5384080.592406-4.598809
42403RBKS\\219222_at-0.042483-0.0338440.973121-4.600324
42404LOC100506621\\227061_at0.2745940.1615210.872258-4.600193
42405CCDC67\\1554071_at-0.495979-0.7697970.444620-4.597237
42406MCM9\\219673_at0.5719320.4293590.669291-4.599361
42407LOC730101\\213248_at0.6620870.5309130.597555-4.598851
42408LOC100508546\\244037_at1.6350561.7270840.089605-4.585379
42409RNPS1\\200060_s_at0.6839440.3387900.736021-4.599726
42410C8orf74\\1569246_a_at-0.000976-0.0010880.999136-4.600331
42411UTP14C\\203614_at0.9603500.5241200.602241-4.598888
42412RHEB\\201452_at-0.141799-0.1484660.882502-4.600214
42413CXCL16\\223454_at0.4768460.2460330.806546-4.600012
42414PSPC1\\218371_s_at0.8607900.5465570.586831-4.598763
42415SIK3\\213034_at0.4826290.2810110.779726-4.599915
42416ACOT9\\221641_s_at0.5388550.2920220.771337-4.599881
42417KIAA1661\\215943_at0.3225280.4486260.655414-4.599273
42418STEAP2\\225871_at0.4884230.3179570.751687-4.599798
42419AKAP5\\207800_at0.8674801.3925260.169208-4.590438
42420C1orf57\\223272_s_at1.0616390.6984010.487785-4.597779
42421C7orf30\\226385_s_at0.7365950.3661830.715593-4.599625
42422BAX\\208478_s_at0.3161870.2579960.797345-4.599980
42423MAN1C1\\218918_at0.4383000.2889370.773685-4.599891
42424SGSM3\\214779_s_at0.6368250.4558550.650238-4.599238
42425LOC100508009\\231516_at-0.632829-1.3355010.187057-4.591208
42426ASCL3\\221161_at-0.296944-0.3964760.693245-4.599504
42427DALRD3\\221934_s_at0.8156170.5454510.587586-4.598769
42428DAPK2\\206324_s_at0.6174380.4342480.665759-4.599339
42429NUP155\\206550_s_at0.7352160.5652730.574122-4.598654
42430TMF1\\215855_s_at0.2901740.1984520.843402-4.600123
42431LOC100505584\\216336_x_at0.1845880.0867690.931161-4.600291
42432ARID1B\\1566990_x_at0.3229590.2383630.812460-4.600031
42433LOC100287105\\1570171_at0.3473640.3447130.731587-4.599705
42434UTRN\\225093_at0.8264170.3839180.702477-4.599555
42435HIST3H3\\208572_at0.4661940.7868810.434633-4.597099
42436ZNF316\\227170_at0.3084290.2749180.784380-4.599932
42437ETV6\\205585_at0.1967580.1793110.858334-4.600161
42438LOC400550\\243059_at0.2840040.2392380.811785-4.600029
42439B3GAT2\\234146_at-0.141648-0.2386790.812216-4.600030
42440HMGB4\\230473_s_at-0.062882-0.0982540.922078-4.600280
42441CMTM6\\217947_at0.6611080.2793300.781009-4.599920
42442BRAP\\209922_at0.5701440.5771890.566100-4.598583
42443BARD1\\205345_at0.6953830.4822400.631494-4.599109
42444MR1\\207565_s_at0.3112170.2276160.820765-4.600057
42445SORT1\\212797_at0.2396720.1717830.864221-4.600175
42446FLJ31485\\243351_at0.3745680.3576620.721927-4.599657
42447BPI\\205557_at-0.506693-0.6415040.523784-4.598175
42448CECR3\\1564352_at-0.170982-0.1917250.848643-4.600137
\n", - "

42449 rows × 5 columns

\n", - "
" - ], - "text/plain": [ - " probe log_fc t p_value b\n", - "0 KIAA1377\\235956_at 0.879185 0.576089 0.566838 -4.598590\n", - "1 ZNF358\\226260_x_at 0.516999 0.481906 0.631730 -4.599110\n", - "2 GPR135\\214503_x_at -0.037486 -0.105517 0.916339 -4.600272\n", - "3 GPATCH2\\242224_at 0.245595 0.215820 0.829904 -4.600085\n", - "4 RPL24\\214143_x_at 1.012177 0.364221 0.717050 -4.599632\n", - "5 PALM2\\1554640_at 0.198167 0.165797 0.868907 -4.600186\n", - "6 LOC339316\\242084_at 0.001682 0.003089 0.997546 -4.600330\n", - "7 FECH\\203115_at 0.895703 0.707561 0.482120 -4.597713\n", - "8 KCNJ9\\207527_at 0.148250 0.182965 0.855479 -4.600154\n", - "9 C21orf96\\220918_at 0.286274 0.241679 0.809902 -4.600023\n", - "10 SAT2\\225272_at 0.785265 0.435954 0.664528 -4.599331\n", - "11 EHD1\\209038_s_at 0.858592 0.767820 0.445785 -4.597252\n", - "12 CBLB\\208348_s_at 0.376908 0.575643 0.567137 -4.598593\n", - "13 C20orf85\\229542_at 1.120739 0.718556 0.475370 -4.597631\n", - "14 UGGT1\\218257_s_at 0.220018 0.175489 0.861321 -4.600168\n", - "15 LOC283585\\1561442_at -0.028199 -0.033870 0.973100 -4.600324\n", - "16 EMP2\\204975_at 1.187015 0.468782 0.641025 -4.599176\n", - "17 LHFP\\218656_s_at 1.000603 0.474785 0.636767 -4.599146\n", - "18 SNCAIP\\237834_at 0.056520 0.079546 0.936879 -4.600297\n", - "19 RDH8\\220683_at -0.150771 -0.153581 0.878486 -4.600206\n", - "20 SRSF4\\239512_at 0.312302 0.184059 0.854625 -4.600152\n", - "21 ACTB\\213867_x_at 0.685520 0.238904 0.812043 -4.600030\n", - "22 FAM182B\\215487_x_at 0.407109 0.504831 0.615637 -4.598992\n", - "23 C6orf108\\213871_s_at -0.018360 -0.028788 0.977135 -4.600326\n", - "24 CSRNP2\\225042_s_at 0.401834 0.290746 0.772308 -4.599885\n", - "25 SLCO2B1\\203473_at 0.729965 0.363953 0.717249 -4.599633\n", - "26 MYNN\\237510_at -0.254418 -0.284690 0.776921 -4.599904\n", - "27 NAP1L1\\208752_x_at 0.832706 0.352684 0.725635 -4.599676\n", - "28 ADAM28\\205997_at 0.750291 0.635362 0.527752 -4.598216\n", - "29 LOC100507248\\235236_at -0.428787 -0.580283 0.564026 -4.598565\n", - "30 PHF8\\238837_at 0.085134 0.163629 0.870606 -4.600189\n", - "31 C9orf96\\1554787_at -0.182682 -0.258592 0.796888 -4.599978\n", - "32 TNPO2\\210585_s_at 0.602312 0.766452 0.446591 -4.597263\n", - "33 FLJ31485\\239569_at 0.462034 0.482868 0.631051 -4.599106\n", - "34 PUM1\\201164_s_at 0.771907 0.393178 0.695665 -4.599517\n", - "35 COX4I1\\202698_x_at 0.889904 0.365176 0.716341 -4.599629\n", - "36 IZUMO4\\215734_at 0.551718 0.557249 0.579554 -4.598701\n", - "37 TPSAB1\\216485_s_at 0.304421 0.581178 0.563427 -4.598559\n", - "38 LMAN1L\\220420_at -0.878393 -1.647269 0.105043 -4.586668\n", - "39 LY6K\\223687_s_at 0.668165 0.722964 0.472678 -4.597598\n", - "40 ACAD10\\238655_at 0.102328 0.098604 0.921801 -4.600279\n", - "41 TIMM22\\219184_x_at 0.502821 0.370580 0.712333 -4.599608\n", - "42 HUS1\\217618_x_at 0.101851 0.084376 0.933055 -4.600293\n", - "43 EPHA7\\206852_at 0.224332 0.318597 0.751204 -4.599796\n", - "44 CSH1\\208069_x_at 0.452654 1.087883 0.281256 -4.594215\n", - "45 FMNL2\\242665_at 0.814379 0.634494 0.528314 -4.598222\n", - "46 PUS3\\221277_s_at 0.706315 0.472398 0.638458 -4.599158\n", - "47 CELF4\\231220_at 0.307643 0.600501 0.550569 -4.598440\n", - "48 RBM6\\228030_at 0.582032 0.291114 0.772028 -4.599884\n", - "49 AVIL\\233333_x_at 0.289393 0.205224 0.838133 -4.600109\n", - "... ... ... ... ... ...\n", - "42399 MON1B\\233557_s_at 0.356762 0.239027 0.811948 -4.600029\n", - "42400 CLLU1\\1558185_at 0.295150 0.447277 0.656382 -4.599279\n", - "42401 KTN1\\214709_s_at 0.887451 0.401390 0.689644 -4.599483\n", - "42402 KRTAP4-7\\216810_at -0.367947 -0.538408 0.592406 -4.598809\n", - "42403 RBKS\\219222_at -0.042483 -0.033844 0.973121 -4.600324\n", - "42404 LOC100506621\\227061_at 0.274594 0.161521 0.872258 -4.600193\n", - "42405 CCDC67\\1554071_at -0.495979 -0.769797 0.444620 -4.597237\n", - "42406 MCM9\\219673_at 0.571932 0.429359 0.669291 -4.599361\n", - "42407 LOC730101\\213248_at 0.662087 0.530913 0.597555 -4.598851\n", - "42408 LOC100508546\\244037_at 1.635056 1.727084 0.089605 -4.585379\n", - "42409 RNPS1\\200060_s_at 0.683944 0.338790 0.736021 -4.599726\n", - "42410 C8orf74\\1569246_a_at -0.000976 -0.001088 0.999136 -4.600331\n", - "42411 UTP14C\\203614_at 0.960350 0.524120 0.602241 -4.598888\n", - "42412 RHEB\\201452_at -0.141799 -0.148466 0.882502 -4.600214\n", - "42413 CXCL16\\223454_at 0.476846 0.246033 0.806546 -4.600012\n", - "42414 PSPC1\\218371_s_at 0.860790 0.546557 0.586831 -4.598763\n", - "42415 SIK3\\213034_at 0.482629 0.281011 0.779726 -4.599915\n", - "42416 ACOT9\\221641_s_at 0.538855 0.292022 0.771337 -4.599881\n", - "42417 KIAA1661\\215943_at 0.322528 0.448626 0.655414 -4.599273\n", - "42418 STEAP2\\225871_at 0.488423 0.317957 0.751687 -4.599798\n", - "42419 AKAP5\\207800_at 0.867480 1.392526 0.169208 -4.590438\n", - "42420 C1orf57\\223272_s_at 1.061639 0.698401 0.487785 -4.597779\n", - "42421 C7orf30\\226385_s_at 0.736595 0.366183 0.715593 -4.599625\n", - "42422 BAX\\208478_s_at 0.316187 0.257996 0.797345 -4.599980\n", - "42423 MAN1C1\\218918_at 0.438300 0.288937 0.773685 -4.599891\n", - "42424 SGSM3\\214779_s_at 0.636825 0.455855 0.650238 -4.599238\n", - "42425 LOC100508009\\231516_at -0.632829 -1.335501 0.187057 -4.591208\n", - "42426 ASCL3\\221161_at -0.296944 -0.396476 0.693245 -4.599504\n", - "42427 DALRD3\\221934_s_at 0.815617 0.545451 0.587586 -4.598769\n", - "42428 DAPK2\\206324_s_at 0.617438 0.434248 0.665759 -4.599339\n", - "42429 NUP155\\206550_s_at 0.735216 0.565273 0.574122 -4.598654\n", - "42430 TMF1\\215855_s_at 0.290174 0.198452 0.843402 -4.600123\n", - "42431 LOC100505584\\216336_x_at 0.184588 0.086769 0.931161 -4.600291\n", - "42432 ARID1B\\1566990_x_at 0.322959 0.238363 0.812460 -4.600031\n", - "42433 LOC100287105\\1570171_at 0.347364 0.344713 0.731587 -4.599705\n", - "42434 UTRN\\225093_at 0.826417 0.383918 0.702477 -4.599555\n", - "42435 HIST3H3\\208572_at 0.466194 0.786881 0.434633 -4.597099\n", - "42436 ZNF316\\227170_at 0.308429 0.274918 0.784380 -4.599932\n", - "42437 ETV6\\205585_at 0.196758 0.179311 0.858334 -4.600161\n", - "42438 LOC400550\\243059_at 0.284004 0.239238 0.811785 -4.600029\n", - "42439 B3GAT2\\234146_at -0.141648 -0.238679 0.812216 -4.600030\n", - "42440 HMGB4\\230473_s_at -0.062882 -0.098254 0.922078 -4.600280\n", - "42441 CMTM6\\217947_at 0.661108 0.279330 0.781009 -4.599920\n", - "42442 BRAP\\209922_at 0.570144 0.577189 0.566100 -4.598583\n", - "42443 BARD1\\205345_at 0.695383 0.482240 0.631494 -4.599109\n", - "42444 MR1\\207565_s_at 0.311217 0.227616 0.820765 -4.600057\n", - "42445 SORT1\\212797_at 0.239672 0.171783 0.864221 -4.600175\n", - "42446 FLJ31485\\243351_at 0.374568 0.357662 0.721927 -4.599657\n", - "42447 BPI\\205557_at -0.506693 -0.641504 0.523784 -4.598175\n", - "42448 CECR3\\1564352_at -0.170982 -0.191725 0.848643 -4.600137\n", - "\n", - "[42449 rows x 5 columns]" - ] - }, - "execution_count": 52, - "metadata": {}, - "output_type": "execute_result" - } - ], + "outputs": [], "source": [ "top_fit" ] @@ -8012,618 +455,14 @@ }, { "cell_type": "code", - "execution_count": 57, + "execution_count": null, "metadata": { "collapsed": false, "deletable": true, "editable": true, "scrolled": true }, - "outputs": [ - { - "data": { - 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log_fctp_valueb
probe
IL1F8\\224230_at-1.546104-3.4495700.001067-4.548413
LOC400590\\1560992_at2.1977043.4346480.001117-4.548785
ANGEL1\\244685_at-1.178030-2.8077170.006833-4.563804
GRK7\\1552929_at1.6799922.5628750.013065-4.569267
FLJ33996\\237790_at1.2038642.5461200.013639-4.569630
POSTN\\214981_at2.1562202.5208970.014548-4.570174
LOC100507153\\1568762_at1.5389022.5074010.015056-4.570464
GPR17\\206190_at1.3187512.4563090.017129-4.571554
TTC39A\\217101_at1.2496502.4486720.017460-4.571715
RNF141\\1565546_at1.5468282.4373640.017960-4.571954
MAF\\1566323_at-1.440637-2.4334960.018134-4.572036
DPF3\\235357_at-1.212370-2.4006480.019676-4.572725
METAP1D\\1565755_at1.5101952.3994070.019736-4.572750
ZNF780B\\214899_at1.6443262.3968250.019863-4.572804
RUNX1T1\\216831_s_at2.0969882.3902940.020185-4.572940
GFRA2\\205722_s_at1.3868362.3715310.021139-4.573330
LOC100288139\\234426_x_at1.5801942.3512810.022214-4.573749
C2orf14\\224278_at-1.270161-2.3465010.022474-4.573847
LOXL4\\1570219_at-1.320024-2.3228380.023805-4.574333
IGHG1\\216892_at-1.353338-2.3041210.024907-4.574714
PKLR\\210451_at-0.951392-2.3023120.025016-4.574751
TRAF5\\1569861_at-1.419547-2.2962000.025387-4.574875
DNAH14\\1567861_at1.3683432.2945680.025487-4.574908
GRIA3\\230144_at1.5857592.2507860.028300-4.575791
SLC38A10\\1563226_at1.6119602.2461470.028613-4.575883
MARCH7\\1557703_at1.2640782.2353050.029358-4.576100
NCOA3\\1562439_at1.2794972.2195040.030475-4.576414
LOC100287689\\243665_s_at1.3150872.2179970.030583-4.576444
MAGIX\\219965_s_at1.6668592.2137780.030888-4.576528
LOC643763\\1558387_at-1.716835-2.1932420.032413-4.576933
UBR4\\231889_at1.3422342.1883550.032785-4.577029
GTPBP10\\230684_at1.6674592.1788500.033520-4.577215
ADCYAP1\\230237_at-1.768758-2.1731140.033971-4.577328
CRYBA2\\220136_s_at0.7877492.1554190.035394-4.577673
LMTK2\\235307_at-1.246947-2.1452620.036235-4.577870
PRO2949\\1553374_at1.4963702.1432000.036408-4.577910
C9orf130\\234429_at1.1690902.1324080.037324-4.578118
DNM3\\1558502_s_at1.8238552.1310270.037442-4.578145
HBQ1\\220807_at-0.815548-2.1167880.038685-4.578419
LOC100131825\\217442_at1.4768312.1128390.039036-4.578494
IL17B\\220273_at1.3602962.1111630.039186-4.578527
MAGEB4\\207580_at-1.415009-2.1041620.039817-4.578660
PEX26\\235098_at1.4227672.0946470.040689-4.578842
POFUT2\\207448_at-0.987136-2.0913140.040998-4.578905
ART1\\1570480_s_at-1.162461-2.0815680.041915-4.579091
CIT\\242872_at1.5277112.0808930.041979-4.579103
SSX2\\210497_x_at-1.218773-2.0799310.042070-4.579122
C20orf94\\236390_at1.6072482.0702930.042997-4.579304
SLC17A1\\1560885_x_at-1.133660-2.0668630.043331-4.579369
PCP4\\205549_at-1.410662-2.0613660.043871-4.579472
GOLM1\\1558248_at1.3612492.0461920.045392-4.579757
RNASE1\\217093_at1.1360942.0378960.046243-4.579913
ZNRD1-AS\\234457_at-1.297711-2.0366700.046369-4.579935
METTL6\\1557991_at1.3286312.0341470.046631-4.579982
LOC389634\\1560119_at1.7168402.0320550.046850-4.580021
IL2\\207849_at-1.448060-2.0306780.046994-4.580047
PRLR\\211917_s_at1.4107092.0299500.047070-4.580061
GRIK2\\1555375_at-1.422374-2.0293930.047129-4.580071
RGS20\\210138_at1.4532212.0291720.047152-4.580075
GP5\\211525_s_at-1.216566-2.0279480.047281-4.580098
TSC2\\215624_at1.6367162.0245350.047642-4.580161
PDE6A\\206623_at1.5677742.0233910.047763-4.580183
FAM84A\\228459_at1.0976562.0221420.047896-4.580206
LOC283868\\1564683_at1.3131712.0211210.048005-4.580225
BEND6\\1568820_a_at-0.943036-2.0194560.048183-4.580256
C21orf94\\1553519_at-1.175958-2.0168910.048458-4.580303
ACTL9\\243208_x_at1.1030292.0109670.049099-4.580413
EFCAB6\\234732_s_at1.4125262.0066270.049574-4.580493
KDSR\\222359_x_at1.3439632.0065280.049585-4.580495
LOC100506920\\237659_at0.7768892.0055030.049697-4.580514
SHMT1\\231701_s_at-1.117987-2.0048080.049774-4.580527
\n", - "
" - ], - "text/plain": [ - " log_fc t p_value b\n", - "probe \n", - "IL1F8\\224230_at -1.546104 -3.449570 0.001067 -4.548413\n", - "LOC400590\\1560992_at 2.197704 3.434648 0.001117 -4.548785\n", - "ANGEL1\\244685_at -1.178030 -2.807717 0.006833 -4.563804\n", - "GRK7\\1552929_at 1.679992 2.562875 0.013065 -4.569267\n", - "FLJ33996\\237790_at 1.203864 2.546120 0.013639 -4.569630\n", - "POSTN\\214981_at 2.156220 2.520897 0.014548 -4.570174\n", - "LOC100507153\\1568762_at 1.538902 2.507401 0.015056 -4.570464\n", - "GPR17\\206190_at 1.318751 2.456309 0.017129 -4.571554\n", - "TTC39A\\217101_at 1.249650 2.448672 0.017460 -4.571715\n", - "RNF141\\1565546_at 1.546828 2.437364 0.017960 -4.571954\n", - "MAF\\1566323_at -1.440637 -2.433496 0.018134 -4.572036\n", - "DPF3\\235357_at -1.212370 -2.400648 0.019676 -4.572725\n", - "METAP1D\\1565755_at 1.510195 2.399407 0.019736 -4.572750\n", - "ZNF780B\\214899_at 1.644326 2.396825 0.019863 -4.572804\n", - "RUNX1T1\\216831_s_at 2.096988 2.390294 0.020185 -4.572940\n", - "GFRA2\\205722_s_at 1.386836 2.371531 0.021139 -4.573330\n", - "LOC100288139\\234426_x_at 1.580194 2.351281 0.022214 -4.573749\n", - "C2orf14\\224278_at -1.270161 -2.346501 0.022474 -4.573847\n", - "LOXL4\\1570219_at -1.320024 -2.322838 0.023805 -4.574333\n", - "IGHG1\\216892_at -1.353338 -2.304121 0.024907 -4.574714\n", - "PKLR\\210451_at -0.951392 -2.302312 0.025016 -4.574751\n", - "TRAF5\\1569861_at -1.419547 -2.296200 0.025387 -4.574875\n", - "DNAH14\\1567861_at 1.368343 2.294568 0.025487 -4.574908\n", - "GRIA3\\230144_at 1.585759 2.250786 0.028300 -4.575791\n", - "SLC38A10\\1563226_at 1.611960 2.246147 0.028613 -4.575883\n", - "MARCH7\\1557703_at 1.264078 2.235305 0.029358 -4.576100\n", - "NCOA3\\1562439_at 1.279497 2.219504 0.030475 -4.576414\n", - "LOC100287689\\243665_s_at 1.315087 2.217997 0.030583 -4.576444\n", - "MAGIX\\219965_s_at 1.666859 2.213778 0.030888 -4.576528\n", - "LOC643763\\1558387_at -1.716835 -2.193242 0.032413 -4.576933\n", - "UBR4\\231889_at 1.342234 2.188355 0.032785 -4.577029\n", - "GTPBP10\\230684_at 1.667459 2.178850 0.033520 -4.577215\n", - "ADCYAP1\\230237_at -1.768758 -2.173114 0.033971 -4.577328\n", - "CRYBA2\\220136_s_at 0.787749 2.155419 0.035394 -4.577673\n", - "LMTK2\\235307_at -1.246947 -2.145262 0.036235 -4.577870\n", - "PRO2949\\1553374_at 1.496370 2.143200 0.036408 -4.577910\n", - "C9orf130\\234429_at 1.169090 2.132408 0.037324 -4.578118\n", - "DNM3\\1558502_s_at 1.823855 2.131027 0.037442 -4.578145\n", - "HBQ1\\220807_at -0.815548 -2.116788 0.038685 -4.578419\n", - "LOC100131825\\217442_at 1.476831 2.112839 0.039036 -4.578494\n", - "IL17B\\220273_at 1.360296 2.111163 0.039186 -4.578527\n", - "MAGEB4\\207580_at -1.415009 -2.104162 0.039817 -4.578660\n", - "PEX26\\235098_at 1.422767 2.094647 0.040689 -4.578842\n", - "POFUT2\\207448_at -0.987136 -2.091314 0.040998 -4.578905\n", - "ART1\\1570480_s_at -1.162461 -2.081568 0.041915 -4.579091\n", - "CIT\\242872_at 1.527711 2.080893 0.041979 -4.579103\n", - "SSX2\\210497_x_at -1.218773 -2.079931 0.042070 -4.579122\n", - "C20orf94\\236390_at 1.607248 2.070293 0.042997 -4.579304\n", - "SLC17A1\\1560885_x_at -1.133660 -2.066863 0.043331 -4.579369\n", - "PCP4\\205549_at -1.410662 -2.061366 0.043871 -4.579472\n", - "GOLM1\\1558248_at 1.361249 2.046192 0.045392 -4.579757\n", - "RNASE1\\217093_at 1.136094 2.037896 0.046243 -4.579913\n", - "ZNRD1-AS\\234457_at -1.297711 -2.036670 0.046369 -4.579935\n", - "METTL6\\1557991_at 1.328631 2.034147 0.046631 -4.579982\n", - "LOC389634\\1560119_at 1.716840 2.032055 0.046850 -4.580021\n", - "IL2\\207849_at -1.448060 -2.030678 0.046994 -4.580047\n", - "PRLR\\211917_s_at 1.410709 2.029950 0.047070 -4.580061\n", - "GRIK2\\1555375_at -1.422374 -2.029393 0.047129 -4.580071\n", - "RGS20\\210138_at 1.453221 2.029172 0.047152 -4.580075\n", - "GP5\\211525_s_at -1.216566 -2.027948 0.047281 -4.580098\n", - "TSC2\\215624_at 1.636716 2.024535 0.047642 -4.580161\n", - "PDE6A\\206623_at 1.567774 2.023391 0.047763 -4.580183\n", - "FAM84A\\228459_at 1.097656 2.022142 0.047896 -4.580206\n", - "LOC283868\\1564683_at 1.313171 2.021121 0.048005 -4.580225\n", - "BEND6\\1568820_a_at -0.943036 -2.019456 0.048183 -4.580256\n", - "C21orf94\\1553519_at -1.175958 -2.016891 0.048458 -4.580303\n", - "ACTL9\\243208_x_at 1.103029 2.010967 0.049099 -4.580413\n", - "EFCAB6\\234732_s_at 1.412526 2.006627 0.049574 -4.580493\n", - "KDSR\\222359_x_at 1.343963 2.006528 0.049585 -4.580495\n", - "LOC100506920\\237659_at 0.776889 2.005503 0.049697 -4.580514\n", - "SHMT1\\231701_s_at -1.117987 -2.004808 0.049774 -4.580527" - ] - }, - "execution_count": 57, - "metadata": {}, - "output_type": "execute_result" - } - ], + "outputs": [], "source": [ "top_probes = top_fit[top_fit.p_value < 0.05] \\\n", " .set_index(['probe']).sort(['p_value'], ascending = True)\n", @@ -8632,691 +471,14 @@ }, { "cell_type": "code", - "execution_count": 58, + "execution_count": null, "metadata": { "collapsed": false, "deletable": true, "editable": true, "scrolled": true }, - "outputs": [ - { - "data": { - "text/html": [ - 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log_fctp_valuebgene_name
probe
IL1F8\\224230_at-1.546104-3.4495700.001067-4.548413IL1F8
LOC400590\\1560992_at2.1977043.4346480.001117-4.548785LOC400590
ANGEL1\\244685_at-1.178030-2.8077170.006833-4.563804ANGEL1
GRK7\\1552929_at1.6799922.5628750.013065-4.569267GRK7
FLJ33996\\237790_at1.2038642.5461200.013639-4.569630FLJ33996
POSTN\\214981_at2.1562202.5208970.014548-4.570174POSTN
LOC100507153\\1568762_at1.5389022.5074010.015056-4.570464LOC100507153
GPR17\\206190_at1.3187512.4563090.017129-4.571554GPR17
TTC39A\\217101_at1.2496502.4486720.017460-4.571715TTC39A
RNF141\\1565546_at1.5468282.4373640.017960-4.571954RNF141
MAF\\1566323_at-1.440637-2.4334960.018134-4.572036MAF
DPF3\\235357_at-1.212370-2.4006480.019676-4.572725DPF3
METAP1D\\1565755_at1.5101952.3994070.019736-4.572750METAP1D
ZNF780B\\214899_at1.6443262.3968250.019863-4.572804ZNF780B
RUNX1T1\\216831_s_at2.0969882.3902940.020185-4.572940RUNX1T1
GFRA2\\205722_s_at1.3868362.3715310.021139-4.573330GFRA2
LOC100288139\\234426_x_at1.5801942.3512810.022214-4.573749LOC100288139
C2orf14\\224278_at-1.270161-2.3465010.022474-4.573847C2orf14
LOXL4\\1570219_at-1.320024-2.3228380.023805-4.574333LOXL4
IGHG1\\216892_at-1.353338-2.3041210.024907-4.574714IGHG1
PKLR\\210451_at-0.951392-2.3023120.025016-4.574751PKLR
TRAF5\\1569861_at-1.419547-2.2962000.025387-4.574875TRAF5
DNAH14\\1567861_at1.3683432.2945680.025487-4.574908DNAH14
GRIA3\\230144_at1.5857592.2507860.028300-4.575791GRIA3
SLC38A10\\1563226_at1.6119602.2461470.028613-4.575883SLC38A10
MARCH7\\1557703_at1.2640782.2353050.029358-4.576100MARCH7
NCOA3\\1562439_at1.2794972.2195040.030475-4.576414NCOA3
LOC100287689\\243665_s_at1.3150872.2179970.030583-4.576444LOC100287689
MAGIX\\219965_s_at1.6668592.2137780.030888-4.576528MAGIX
LOC643763\\1558387_at-1.716835-2.1932420.032413-4.576933LOC643763
UBR4\\231889_at1.3422342.1883550.032785-4.577029UBR4
GTPBP10\\230684_at1.6674592.1788500.033520-4.577215GTPBP10
ADCYAP1\\230237_at-1.768758-2.1731140.033971-4.577328ADCYAP1
CRYBA2\\220136_s_at0.7877492.1554190.035394-4.577673CRYBA2
LMTK2\\235307_at-1.246947-2.1452620.036235-4.577870LMTK2
PRO2949\\1553374_at1.4963702.1432000.036408-4.577910PRO2949
C9orf130\\234429_at1.1690902.1324080.037324-4.578118C9orf130
DNM3\\1558502_s_at1.8238552.1310270.037442-4.578145DNM3
HBQ1\\220807_at-0.815548-2.1167880.038685-4.578419HBQ1
LOC100131825\\217442_at1.4768312.1128390.039036-4.578494LOC100131825
IL17B\\220273_at1.3602962.1111630.039186-4.578527IL17B
MAGEB4\\207580_at-1.415009-2.1041620.039817-4.578660MAGEB4
PEX26\\235098_at1.4227672.0946470.040689-4.578842PEX26
POFUT2\\207448_at-0.987136-2.0913140.040998-4.578905POFUT2
ART1\\1570480_s_at-1.162461-2.0815680.041915-4.579091ART1
CIT\\242872_at1.5277112.0808930.041979-4.579103CIT
SSX2\\210497_x_at-1.218773-2.0799310.042070-4.579122SSX2
C20orf94\\236390_at1.6072482.0702930.042997-4.579304C20orf94
SLC17A1\\1560885_x_at-1.133660-2.0668630.043331-4.579369SLC17A1
PCP4\\205549_at-1.410662-2.0613660.043871-4.579472PCP4
GOLM1\\1558248_at1.3612492.0461920.045392-4.579757GOLM1
RNASE1\\217093_at1.1360942.0378960.046243-4.579913RNASE1
ZNRD1-AS\\234457_at-1.297711-2.0366700.046369-4.579935ZNRD1-AS
METTL6\\1557991_at1.3286312.0341470.046631-4.579982METTL6
LOC389634\\1560119_at1.7168402.0320550.046850-4.580021LOC389634
IL2\\207849_at-1.448060-2.0306780.046994-4.580047IL2
PRLR\\211917_s_at1.4107092.0299500.047070-4.580061PRLR
GRIK2\\1555375_at-1.422374-2.0293930.047129-4.580071GRIK2
RGS20\\210138_at1.4532212.0291720.047152-4.580075RGS20
GP5\\211525_s_at-1.216566-2.0279480.047281-4.580098GP5
TSC2\\215624_at1.6367162.0245350.047642-4.580161TSC2
PDE6A\\206623_at1.5677742.0233910.047763-4.580183PDE6A
FAM84A\\228459_at1.0976562.0221420.047896-4.580206FAM84A
LOC283868\\1564683_at1.3131712.0211210.048005-4.580225LOC283868
BEND6\\1568820_a_at-0.943036-2.0194560.048183-4.580256BEND6
C21orf94\\1553519_at-1.175958-2.0168910.048458-4.580303C21orf94
ACTL9\\243208_x_at1.1030292.0109670.049099-4.580413ACTL9
EFCAB6\\234732_s_at1.4125262.0066270.049574-4.580493EFCAB6
KDSR\\222359_x_at1.3439632.0065280.049585-4.580495KDSR
LOC100506920\\237659_at0.7768892.0055030.049697-4.580514LOC100506920
SHMT1\\231701_s_at-1.117987-2.0048080.049774-4.580527SHMT1
\n", - "
" - ], - "text/plain": [ - " log_fc t p_value b gene_name\n", - "probe \n", - "IL1F8\\224230_at -1.546104 -3.449570 0.001067 -4.548413 IL1F8\n", - "LOC400590\\1560992_at 2.197704 3.434648 0.001117 -4.548785 LOC400590\n", - "ANGEL1\\244685_at -1.178030 -2.807717 0.006833 -4.563804 ANGEL1\n", - "GRK7\\1552929_at 1.679992 2.562875 0.013065 -4.569267 GRK7\n", - "FLJ33996\\237790_at 1.203864 2.546120 0.013639 -4.569630 FLJ33996\n", - "POSTN\\214981_at 2.156220 2.520897 0.014548 -4.570174 POSTN\n", - "LOC100507153\\1568762_at 1.538902 2.507401 0.015056 -4.570464 LOC100507153\n", - "GPR17\\206190_at 1.318751 2.456309 0.017129 -4.571554 GPR17\n", - "TTC39A\\217101_at 1.249650 2.448672 0.017460 -4.571715 TTC39A\n", - "RNF141\\1565546_at 1.546828 2.437364 0.017960 -4.571954 RNF141\n", - "MAF\\1566323_at -1.440637 -2.433496 0.018134 -4.572036 MAF\n", - "DPF3\\235357_at -1.212370 -2.400648 0.019676 -4.572725 DPF3\n", - "METAP1D\\1565755_at 1.510195 2.399407 0.019736 -4.572750 METAP1D\n", - "ZNF780B\\214899_at 1.644326 2.396825 0.019863 -4.572804 ZNF780B\n", - "RUNX1T1\\216831_s_at 2.096988 2.390294 0.020185 -4.572940 RUNX1T1\n", - "GFRA2\\205722_s_at 1.386836 2.371531 0.021139 -4.573330 GFRA2\n", - "LOC100288139\\234426_x_at 1.580194 2.351281 0.022214 -4.573749 LOC100288139\n", - "C2orf14\\224278_at -1.270161 -2.346501 0.022474 -4.573847 C2orf14\n", - "LOXL4\\1570219_at -1.320024 -2.322838 0.023805 -4.574333 LOXL4\n", - "IGHG1\\216892_at -1.353338 -2.304121 0.024907 -4.574714 IGHG1\n", - "PKLR\\210451_at -0.951392 -2.302312 0.025016 -4.574751 PKLR\n", - "TRAF5\\1569861_at -1.419547 -2.296200 0.025387 -4.574875 TRAF5\n", - "DNAH14\\1567861_at 1.368343 2.294568 0.025487 -4.574908 DNAH14\n", - "GRIA3\\230144_at 1.585759 2.250786 0.028300 -4.575791 GRIA3\n", - "SLC38A10\\1563226_at 1.611960 2.246147 0.028613 -4.575883 SLC38A10\n", - "MARCH7\\1557703_at 1.264078 2.235305 0.029358 -4.576100 MARCH7\n", - "NCOA3\\1562439_at 1.279497 2.219504 0.030475 -4.576414 NCOA3\n", - "LOC100287689\\243665_s_at 1.315087 2.217997 0.030583 -4.576444 LOC100287689\n", - "MAGIX\\219965_s_at 1.666859 2.213778 0.030888 -4.576528 MAGIX\n", - "LOC643763\\1558387_at -1.716835 -2.193242 0.032413 -4.576933 LOC643763\n", - "UBR4\\231889_at 1.342234 2.188355 0.032785 -4.577029 UBR4\n", - "GTPBP10\\230684_at 1.667459 2.178850 0.033520 -4.577215 GTPBP10\n", - "ADCYAP1\\230237_at -1.768758 -2.173114 0.033971 -4.577328 ADCYAP1\n", - "CRYBA2\\220136_s_at 0.787749 2.155419 0.035394 -4.577673 CRYBA2\n", - "LMTK2\\235307_at -1.246947 -2.145262 0.036235 -4.577870 LMTK2\n", - "PRO2949\\1553374_at 1.496370 2.143200 0.036408 -4.577910 PRO2949\n", - "C9orf130\\234429_at 1.169090 2.132408 0.037324 -4.578118 C9orf130\n", - "DNM3\\1558502_s_at 1.823855 2.131027 0.037442 -4.578145 DNM3\n", - "HBQ1\\220807_at -0.815548 -2.116788 0.038685 -4.578419 HBQ1\n", - "LOC100131825\\217442_at 1.476831 2.112839 0.039036 -4.578494 LOC100131825\n", - "IL17B\\220273_at 1.360296 2.111163 0.039186 -4.578527 IL17B\n", - "MAGEB4\\207580_at -1.415009 -2.104162 0.039817 -4.578660 MAGEB4\n", - "PEX26\\235098_at 1.422767 2.094647 0.040689 -4.578842 PEX26\n", - "POFUT2\\207448_at -0.987136 -2.091314 0.040998 -4.578905 POFUT2\n", - "ART1\\1570480_s_at -1.162461 -2.081568 0.041915 -4.579091 ART1\n", - "CIT\\242872_at 1.527711 2.080893 0.041979 -4.579103 CIT\n", - "SSX2\\210497_x_at -1.218773 -2.079931 0.042070 -4.579122 SSX2\n", - "C20orf94\\236390_at 1.607248 2.070293 0.042997 -4.579304 C20orf94\n", - "SLC17A1\\1560885_x_at -1.133660 -2.066863 0.043331 -4.579369 SLC17A1\n", - "PCP4\\205549_at -1.410662 -2.061366 0.043871 -4.579472 PCP4\n", - "GOLM1\\1558248_at 1.361249 2.046192 0.045392 -4.579757 GOLM1\n", - "RNASE1\\217093_at 1.136094 2.037896 0.046243 -4.579913 RNASE1\n", - "ZNRD1-AS\\234457_at -1.297711 -2.036670 0.046369 -4.579935 ZNRD1-AS\n", - "METTL6\\1557991_at 1.328631 2.034147 0.046631 -4.579982 METTL6\n", - "LOC389634\\1560119_at 1.716840 2.032055 0.046850 -4.580021 LOC389634\n", - "IL2\\207849_at -1.448060 -2.030678 0.046994 -4.580047 IL2\n", - "PRLR\\211917_s_at 1.410709 2.029950 0.047070 -4.580061 PRLR\n", - "GRIK2\\1555375_at -1.422374 -2.029393 0.047129 -4.580071 GRIK2\n", - "RGS20\\210138_at 1.453221 2.029172 0.047152 -4.580075 RGS20\n", - "GP5\\211525_s_at -1.216566 -2.027948 0.047281 -4.580098 GP5\n", - "TSC2\\215624_at 1.636716 2.024535 0.047642 -4.580161 TSC2\n", - "PDE6A\\206623_at 1.567774 2.023391 0.047763 -4.580183 PDE6A\n", - "FAM84A\\228459_at 1.097656 2.022142 0.047896 -4.580206 FAM84A\n", - "LOC283868\\1564683_at 1.313171 2.021121 0.048005 -4.580225 LOC283868\n", - "BEND6\\1568820_a_at -0.943036 -2.019456 0.048183 -4.580256 BEND6\n", - "C21orf94\\1553519_at -1.175958 -2.016891 0.048458 -4.580303 C21orf94\n", - "ACTL9\\243208_x_at 1.103029 2.010967 0.049099 -4.580413 ACTL9\n", - "EFCAB6\\234732_s_at 1.412526 2.006627 0.049574 -4.580493 EFCAB6\n", - "KDSR\\222359_x_at 1.343963 2.006528 0.049585 -4.580495 KDSR\n", - "LOC100506920\\237659_at 0.776889 2.005503 0.049697 -4.580514 LOC100506920\n", - "SHMT1\\231701_s_at -1.117987 -2.004808 0.049774 -4.580527 SHMT1" - ] - }, - "execution_count": 58, - "metadata": {}, - "output_type": "execute_result" - } - ], + "outputs": [], "source": [ "def get_gene_name(probe):\n", " return probe.split('\\\\')[0]\n", @@ -9338,838 +500,14 @@ }, { "cell_type": "code", - "execution_count": 59, + "execution_count": null, "metadata": { "collapsed": false, "deletable": true, "editable": true, "scrolled": true }, - "outputs": [ - { - "data": { - "text/html": [ - "
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log_fctp_valuebgene_namegene_id
probe
IL1F8\\224230_at-1.546104-3.4495700.001067-4.548413IL1F8None
LOC400590\\1560992_at2.1977043.4346480.001117-4.548785LOC400590400590
ANGEL1\\244685_at-1.178030-2.8077170.006833-4.563804ANGEL123357
GRK7\\1552929_at1.6799922.5628750.013065-4.569267GRK7131890
FLJ33996\\237790_at1.2038642.5461200.013639-4.569630FLJ33996283401
POSTN\\214981_at2.1562202.5208970.014548-4.570174POSTN10631
LOC100507153\\1568762_at1.5389022.5074010.015056-4.570464LOC100507153100507153
GPR17\\206190_at1.3187512.4563090.017129-4.571554GPR172840
TTC39A\\217101_at1.2496502.4486720.017460-4.571715TTC39A22996
RNF141\\1565546_at1.5468282.4373640.017960-4.571954RNF14150862
MAF\\1566323_at-1.440637-2.4334960.018134-4.572036MAF4094
DPF3\\235357_at-1.212370-2.4006480.019676-4.572725DPF38110
METAP1D\\1565755_at1.5101952.3994070.019736-4.572750METAP1D254042
ZNF780B\\214899_at1.6443262.3968250.019863-4.572804ZNF780B163131
RUNX1T1\\216831_s_at2.0969882.3902940.020185-4.572940RUNX1T1862
GFRA2\\205722_s_at1.3868362.3715310.021139-4.573330GFRA22675
LOC100288139\\234426_x_at1.5801942.3512810.022214-4.573749LOC100288139None
C2orf14\\224278_at-1.270161-2.3465010.022474-4.573847C2orf14None
LOXL4\\1570219_at-1.320024-2.3228380.023805-4.574333LOXL484171
IGHG1\\216892_at-1.353338-2.3041210.024907-4.574714IGHG13500
PKLR\\210451_at-0.951392-2.3023120.025016-4.574751PKLR5313
TRAF5\\1569861_at-1.419547-2.2962000.025387-4.574875TRAF57188
DNAH14\\1567861_at1.3683432.2945680.025487-4.574908DNAH14127602
GRIA3\\230144_at1.5857592.2507860.028300-4.575791GRIA32892
SLC38A10\\1563226_at1.6119602.2461470.028613-4.575883SLC38A10124565
MARCH7\\1557703_at1.2640782.2353050.029358-4.576100MARCH764844
NCOA3\\1562439_at1.2794972.2195040.030475-4.576414NCOA38202
LOC100287689\\243665_s_at1.3150872.2179970.030583-4.576444LOC100287689None
MAGIX\\219965_s_at1.6668592.2137780.030888-4.576528MAGIX79917
LOC643763\\1558387_at-1.716835-2.1932420.032413-4.576933LOC643763None
UBR4\\231889_at1.3422342.1883550.032785-4.577029UBR423352
GTPBP10\\230684_at1.6674592.1788500.033520-4.577215GTPBP1085865
ADCYAP1\\230237_at-1.768758-2.1731140.033971-4.577328ADCYAP1116
CRYBA2\\220136_s_at0.7877492.1554190.035394-4.577673CRYBA21412
LMTK2\\235307_at-1.246947-2.1452620.036235-4.577870LMTK222853
PRO2949\\1553374_at1.4963702.1432000.036408-4.577910PRO294955412
C9orf130\\234429_at1.1690902.1324080.037324-4.578118C9orf130None
DNM3\\1558502_s_at1.8238552.1310270.037442-4.578145DNM326052
HBQ1\\220807_at-0.815548-2.1167880.038685-4.578419HBQ13049
LOC100131825\\217442_at1.4768312.1128390.039036-4.578494LOC100131825100131825
IL17B\\220273_at1.3602962.1111630.039186-4.578527IL17B27190
MAGEB4\\207580_at-1.415009-2.1041620.039817-4.578660MAGEB44115
PEX26\\235098_at1.4227672.0946470.040689-4.578842PEX2655670
POFUT2\\207448_at-0.987136-2.0913140.040998-4.578905POFUT223275
ART1\\1570480_s_at-1.162461-2.0815680.041915-4.579091ART1417
CIT\\242872_at1.5277112.0808930.041979-4.579103CIT11113
SSX2\\210497_x_at-1.218773-2.0799310.042070-4.579122SSX26757
C20orf94\\236390_at1.6072482.0702930.042997-4.579304C20orf94128710
SLC17A1\\1560885_x_at-1.133660-2.0668630.043331-4.579369SLC17A16568
PCP4\\205549_at-1.410662-2.0613660.043871-4.579472PCP45121
GOLM1\\1558248_at1.3612492.0461920.045392-4.579757GOLM151280
RNASE1\\217093_at1.1360942.0378960.046243-4.579913RNASE16035
ZNRD1-AS\\234457_at-1.297711-2.0366700.046369-4.579935ZNRD1-ASNone
METTL6\\1557991_at1.3286312.0341470.046631-4.579982METTL6131965
LOC389634\\1560119_at1.7168402.0320550.046850-4.580021LOC389634389634
IL2\\207849_at-1.448060-2.0306780.046994-4.580047IL23558
PRLR\\211917_s_at1.4107092.0299500.047070-4.580061PRLR5618
GRIK2\\1555375_at-1.422374-2.0293930.047129-4.580071GRIK22898
RGS20\\210138_at1.4532212.0291720.047152-4.580075RGS208601
GP5\\211525_s_at-1.216566-2.0279480.047281-4.580098GP52814
TSC2\\215624_at1.6367162.0245350.047642-4.580161TSC27249
PDE6A\\206623_at1.5677742.0233910.047763-4.580183PDE6A5145
FAM84A\\228459_at1.0976562.0221420.047896-4.580206FAM84A151354
LOC283868\\1564683_at1.3131712.0211210.048005-4.580225LOC283868None
BEND6\\1568820_a_at-0.943036-2.0194560.048183-4.580256BEND6221336
C21orf94\\1553519_at-1.175958-2.0168910.048458-4.580303C21orf94None
ACTL9\\243208_x_at1.1030292.0109670.049099-4.580413ACTL9284382
EFCAB6\\234732_s_at1.4125262.0066270.049574-4.580493EFCAB664800
KDSR\\222359_x_at1.3439632.0065280.049585-4.580495KDSR2531
LOC100506920\\237659_at0.7768892.0055030.049697-4.580514LOC100506920None
SHMT1\\231701_s_at-1.117987-2.0048080.049774-4.580527SHMT16470
\n", - "
" - ], - "text/plain": [ - " log_fc t p_value b \\\n", - "probe \n", - "IL1F8\\224230_at -1.546104 -3.449570 0.001067 -4.548413 \n", - "LOC400590\\1560992_at 2.197704 3.434648 0.001117 -4.548785 \n", - "ANGEL1\\244685_at -1.178030 -2.807717 0.006833 -4.563804 \n", - "GRK7\\1552929_at 1.679992 2.562875 0.013065 -4.569267 \n", - "FLJ33996\\237790_at 1.203864 2.546120 0.013639 -4.569630 \n", - "POSTN\\214981_at 2.156220 2.520897 0.014548 -4.570174 \n", - "LOC100507153\\1568762_at 1.538902 2.507401 0.015056 -4.570464 \n", - "GPR17\\206190_at 1.318751 2.456309 0.017129 -4.571554 \n", - "TTC39A\\217101_at 1.249650 2.448672 0.017460 -4.571715 \n", - "RNF141\\1565546_at 1.546828 2.437364 0.017960 -4.571954 \n", - "MAF\\1566323_at -1.440637 -2.433496 0.018134 -4.572036 \n", - "DPF3\\235357_at -1.212370 -2.400648 0.019676 -4.572725 \n", - "METAP1D\\1565755_at 1.510195 2.399407 0.019736 -4.572750 \n", - "ZNF780B\\214899_at 1.644326 2.396825 0.019863 -4.572804 \n", - "RUNX1T1\\216831_s_at 2.096988 2.390294 0.020185 -4.572940 \n", - "GFRA2\\205722_s_at 1.386836 2.371531 0.021139 -4.573330 \n", - "LOC100288139\\234426_x_at 1.580194 2.351281 0.022214 -4.573749 \n", - "C2orf14\\224278_at -1.270161 -2.346501 0.022474 -4.573847 \n", - "LOXL4\\1570219_at -1.320024 -2.322838 0.023805 -4.574333 \n", - "IGHG1\\216892_at -1.353338 -2.304121 0.024907 -4.574714 \n", - "PKLR\\210451_at -0.951392 -2.302312 0.025016 -4.574751 \n", - "TRAF5\\1569861_at -1.419547 -2.296200 0.025387 -4.574875 \n", - "DNAH14\\1567861_at 1.368343 2.294568 0.025487 -4.574908 \n", - "GRIA3\\230144_at 1.585759 2.250786 0.028300 -4.575791 \n", - "SLC38A10\\1563226_at 1.611960 2.246147 0.028613 -4.575883 \n", - "MARCH7\\1557703_at 1.264078 2.235305 0.029358 -4.576100 \n", - "NCOA3\\1562439_at 1.279497 2.219504 0.030475 -4.576414 \n", - "LOC100287689\\243665_s_at 1.315087 2.217997 0.030583 -4.576444 \n", - "MAGIX\\219965_s_at 1.666859 2.213778 0.030888 -4.576528 \n", - "LOC643763\\1558387_at -1.716835 -2.193242 0.032413 -4.576933 \n", - "UBR4\\231889_at 1.342234 2.188355 0.032785 -4.577029 \n", - "GTPBP10\\230684_at 1.667459 2.178850 0.033520 -4.577215 \n", - "ADCYAP1\\230237_at -1.768758 -2.173114 0.033971 -4.577328 \n", - "CRYBA2\\220136_s_at 0.787749 2.155419 0.035394 -4.577673 \n", - "LMTK2\\235307_at -1.246947 -2.145262 0.036235 -4.577870 \n", - "PRO2949\\1553374_at 1.496370 2.143200 0.036408 -4.577910 \n", - "C9orf130\\234429_at 1.169090 2.132408 0.037324 -4.578118 \n", - "DNM3\\1558502_s_at 1.823855 2.131027 0.037442 -4.578145 \n", - "HBQ1\\220807_at -0.815548 -2.116788 0.038685 -4.578419 \n", - "LOC100131825\\217442_at 1.476831 2.112839 0.039036 -4.578494 \n", - "IL17B\\220273_at 1.360296 2.111163 0.039186 -4.578527 \n", - "MAGEB4\\207580_at -1.415009 -2.104162 0.039817 -4.578660 \n", - "PEX26\\235098_at 1.422767 2.094647 0.040689 -4.578842 \n", - "POFUT2\\207448_at -0.987136 -2.091314 0.040998 -4.578905 \n", - "ART1\\1570480_s_at -1.162461 -2.081568 0.041915 -4.579091 \n", - "CIT\\242872_at 1.527711 2.080893 0.041979 -4.579103 \n", - "SSX2\\210497_x_at -1.218773 -2.079931 0.042070 -4.579122 \n", - "C20orf94\\236390_at 1.607248 2.070293 0.042997 -4.579304 \n", - "SLC17A1\\1560885_x_at -1.133660 -2.066863 0.043331 -4.579369 \n", - "PCP4\\205549_at -1.410662 -2.061366 0.043871 -4.579472 \n", - "GOLM1\\1558248_at 1.361249 2.046192 0.045392 -4.579757 \n", - "RNASE1\\217093_at 1.136094 2.037896 0.046243 -4.579913 \n", - "ZNRD1-AS\\234457_at -1.297711 -2.036670 0.046369 -4.579935 \n", - "METTL6\\1557991_at 1.328631 2.034147 0.046631 -4.579982 \n", - "LOC389634\\1560119_at 1.716840 2.032055 0.046850 -4.580021 \n", - "IL2\\207849_at -1.448060 -2.030678 0.046994 -4.580047 \n", - "PRLR\\211917_s_at 1.410709 2.029950 0.047070 -4.580061 \n", - "GRIK2\\1555375_at -1.422374 -2.029393 0.047129 -4.580071 \n", - "RGS20\\210138_at 1.453221 2.029172 0.047152 -4.580075 \n", - "GP5\\211525_s_at -1.216566 -2.027948 0.047281 -4.580098 \n", - "TSC2\\215624_at 1.636716 2.024535 0.047642 -4.580161 \n", - "PDE6A\\206623_at 1.567774 2.023391 0.047763 -4.580183 \n", - "FAM84A\\228459_at 1.097656 2.022142 0.047896 -4.580206 \n", - "LOC283868\\1564683_at 1.313171 2.021121 0.048005 -4.580225 \n", - "BEND6\\1568820_a_at -0.943036 -2.019456 0.048183 -4.580256 \n", - "C21orf94\\1553519_at -1.175958 -2.016891 0.048458 -4.580303 \n", - "ACTL9\\243208_x_at 1.103029 2.010967 0.049099 -4.580413 \n", - "EFCAB6\\234732_s_at 1.412526 2.006627 0.049574 -4.580493 \n", - "KDSR\\222359_x_at 1.343963 2.006528 0.049585 -4.580495 \n", - "LOC100506920\\237659_at 0.776889 2.005503 0.049697 -4.580514 \n", - "SHMT1\\231701_s_at -1.117987 -2.004808 0.049774 -4.580527 \n", - "\n", - " gene_name gene_id \n", - "probe \n", - "IL1F8\\224230_at IL1F8 None \n", - "LOC400590\\1560992_at LOC400590 400590 \n", - "ANGEL1\\244685_at ANGEL1 23357 \n", - "GRK7\\1552929_at GRK7 131890 \n", - "FLJ33996\\237790_at FLJ33996 283401 \n", - "POSTN\\214981_at POSTN 10631 \n", - "LOC100507153\\1568762_at LOC100507153 100507153 \n", - "GPR17\\206190_at GPR17 2840 \n", - "TTC39A\\217101_at TTC39A 22996 \n", - "RNF141\\1565546_at RNF141 50862 \n", - "MAF\\1566323_at MAF 4094 \n", - "DPF3\\235357_at DPF3 8110 \n", - "METAP1D\\1565755_at METAP1D 254042 \n", - "ZNF780B\\214899_at ZNF780B 163131 \n", - "RUNX1T1\\216831_s_at RUNX1T1 862 \n", - "GFRA2\\205722_s_at GFRA2 2675 \n", - "LOC100288139\\234426_x_at LOC100288139 None \n", - "C2orf14\\224278_at C2orf14 None \n", - "LOXL4\\1570219_at LOXL4 84171 \n", - "IGHG1\\216892_at IGHG1 3500 \n", - "PKLR\\210451_at PKLR 5313 \n", - "TRAF5\\1569861_at TRAF5 7188 \n", - "DNAH14\\1567861_at DNAH14 127602 \n", - "GRIA3\\230144_at GRIA3 2892 \n", - "SLC38A10\\1563226_at SLC38A10 124565 \n", - "MARCH7\\1557703_at MARCH7 64844 \n", - "NCOA3\\1562439_at NCOA3 8202 \n", - "LOC100287689\\243665_s_at LOC100287689 None \n", - "MAGIX\\219965_s_at MAGIX 79917 \n", - "LOC643763\\1558387_at LOC643763 None \n", - "UBR4\\231889_at UBR4 23352 \n", - "GTPBP10\\230684_at GTPBP10 85865 \n", - "ADCYAP1\\230237_at ADCYAP1 116 \n", - "CRYBA2\\220136_s_at CRYBA2 1412 \n", - "LMTK2\\235307_at LMTK2 22853 \n", - "PRO2949\\1553374_at PRO2949 55412 \n", - "C9orf130\\234429_at C9orf130 None \n", - "DNM3\\1558502_s_at DNM3 26052 \n", - "HBQ1\\220807_at HBQ1 3049 \n", - "LOC100131825\\217442_at LOC100131825 100131825 \n", - "IL17B\\220273_at IL17B 27190 \n", - "MAGEB4\\207580_at MAGEB4 4115 \n", - "PEX26\\235098_at PEX26 55670 \n", - "POFUT2\\207448_at POFUT2 23275 \n", - "ART1\\1570480_s_at ART1 417 \n", - "CIT\\242872_at CIT 11113 \n", - "SSX2\\210497_x_at SSX2 6757 \n", - "C20orf94\\236390_at C20orf94 128710 \n", - "SLC17A1\\1560885_x_at SLC17A1 6568 \n", - "PCP4\\205549_at PCP4 5121 \n", - "GOLM1\\1558248_at GOLM1 51280 \n", - "RNASE1\\217093_at RNASE1 6035 \n", - "ZNRD1-AS\\234457_at ZNRD1-AS None \n", - "METTL6\\1557991_at METTL6 131965 \n", - "LOC389634\\1560119_at LOC389634 389634 \n", - "IL2\\207849_at IL2 3558 \n", - "PRLR\\211917_s_at PRLR 5618 \n", - "GRIK2\\1555375_at GRIK2 2898 \n", - "RGS20\\210138_at RGS20 8601 \n", - "GP5\\211525_s_at GP5 2814 \n", - "TSC2\\215624_at TSC2 7249 \n", - "PDE6A\\206623_at PDE6A 5145 \n", - "FAM84A\\228459_at FAM84A 151354 \n", - "LOC283868\\1564683_at LOC283868 None \n", - "BEND6\\1568820_a_at BEND6 221336 \n", - "C21orf94\\1553519_at C21orf94 None \n", - "ACTL9\\243208_x_at ACTL9 284382 \n", - "EFCAB6\\234732_s_at EFCAB6 64800 \n", - "KDSR\\222359_x_at KDSR 2531 \n", - "LOC100506920\\237659_at LOC100506920 None \n", - "SHMT1\\231701_s_at SHMT1 6470 " - ] - }, - "execution_count": 59, - "metadata": {}, - "output_type": "execute_result" - } - ], + "outputs": [], "source": [ "from utils import Entrez\n", "\n", @@ -10193,763 +531,14 @@ }, { "cell_type": "code", - "execution_count": 60, + "execution_count": null, "metadata": { "collapsed": false, "deletable": true, "editable": true, "scrolled": true }, - "outputs": [ - { - "data": { - "text/html": [ - "\n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - 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log_fctp_valuebgene_namegene_idpathways_ids
probe
IL1F8\\224230_at-1.546104-3.4495700.001067-4.548413IL1F8None[]
LOC400590\\1560992_at2.1977043.4346480.001117-4.548785LOC400590400590[]
ANGEL1\\244685_at-1.178030-2.8077170.006833-4.563804ANGEL123357[]
GRK7\\1552929_at1.6799922.5628750.013065-4.569267GRK7131890[hsa04062, hsa04144, hsa04744]
FLJ33996\\237790_at1.2038642.5461200.013639-4.569630FLJ33996283401[]
POSTN\\214981_at2.1562202.5208970.014548-4.570174POSTN10631[]
LOC100507153\\1568762_at1.5389022.5074010.015056-4.570464LOC100507153100507153[]
GPR17\\206190_at1.3187512.4563090.017129-4.571554GPR172840[]
TTC39A\\217101_at1.2496502.4486720.017460-4.571715TTC39A22996[]
RNF141\\1565546_at1.5468282.4373640.017960-4.571954RNF14150862[]
MAF\\1566323_at-1.440637-2.4334960.018134-4.572036MAF4094[hsa05202, hsa05321]
DPF3\\235357_at-1.212370-2.4006480.019676-4.572725DPF38110[]
METAP1D\\1565755_at1.5101952.3994070.019736-4.572750METAP1D254042[]
ZNF780B\\214899_at1.6443262.3968250.019863-4.572804ZNF780B163131[]
RUNX1T1\\216831_s_at2.0969882.3902940.020185-4.572940RUNX1T1862[hsa05200, hsa05202, hsa05221]
GFRA2\\205722_s_at1.3868362.3715310.021139-4.573330GFRA22675[]
LOC100288139\\234426_x_at1.5801942.3512810.022214-4.573749LOC100288139None[]
C2orf14\\224278_at-1.270161-2.3465010.022474-4.573847C2orf14None[]
LOXL4\\1570219_at-1.320024-2.3228380.023805-4.574333LOXL484171[]
IGHG1\\216892_at-1.353338-2.3041210.024907-4.574714IGHG13500[]
PKLR\\210451_at-0.951392-2.3023120.025016-4.574751PKLR5313[hsa00010, hsa00230, hsa00620, hsa01100, hsa01130, hsa01200, hsa01230, hsa04910, hsa04930, hsa04932, hsa04950]
TRAF5\\1569861_at-1.419547-2.2962000.025387-4.574875TRAF57188[hsa04064, hsa04668, hsa05168, hsa05169, hsa05200, hsa05203, hsa05222]
DNAH14\\1567861_at1.3683432.2945680.025487-4.574908DNAH14127602[hsa05016]
GRIA3\\230144_at1.5857592.2507860.028300-4.575791GRIA32892[hsa04024, hsa04080, hsa04713, hsa04723, hsa04724, hsa04728, hsa04730, hsa05031, hsa05033, hsa05202]
SLC38A10\\1563226_at1.6119602.2461470.028613-4.575883SLC38A10124565[]
MARCH7\\1557703_at1.2640782.2353050.029358-4.576100MARCH764844[]
NCOA3\\1562439_at1.2794972.2195040.030475-4.576414NCOA38202[hsa04919]
LOC100287689\\243665_s_at1.3150872.2179970.030583-4.576444LOC100287689None[]
MAGIX\\219965_s_at1.6668592.2137780.030888-4.576528MAGIX79917[]
LOC643763\\1558387_at-1.716835-2.1932420.032413-4.576933LOC643763None[]
UBR4\\231889_at1.3422342.1883550.032785-4.577029UBR423352[hsa05203]
GTPBP10\\230684_at1.6674592.1788500.033520-4.577215GTPBP1085865[]
ADCYAP1\\230237_at-1.768758-2.1731140.033971-4.577328ADCYAP1116[hsa04911, hsa04924]
CRYBA2\\220136_s_at0.7877492.1554190.035394-4.577673CRYBA21412[]
LMTK2\\235307_at-1.246947-2.1452620.036235-4.577870LMTK222853[]
PRO2949\\1553374_at1.4963702.1432000.036408-4.577910PRO294955412[]
C9orf130\\234429_at1.1690902.1324080.037324-4.578118C9orf130None[]
DNM3\\1558502_s_at1.8238552.1310270.037442-4.578145DNM326052[hsa04144, hsa04721, hsa04961, hsa05100]
HBQ1\\220807_at-0.815548-2.1167880.038685-4.578419HBQ13049[]
LOC100131825\\217442_at1.4768312.1128390.039036-4.578494LOC100131825100131825[]
IL17B\\220273_at1.3602962.1111630.039186-4.578527IL17B27190[hsa04060]
MAGEB4\\207580_at-1.415009-2.1041620.039817-4.578660MAGEB44115[]
PEX26\\235098_at1.4227672.0946470.040689-4.578842PEX2655670[hsa04146]
POFUT2\\207448_at-0.987136-2.0913140.040998-4.578905POFUT223275[hsa00514]
ART1\\1570480_s_at-1.162461-2.0815680.041915-4.579091ART1417[]
CIT\\242872_at1.5277112.0808930.041979-4.579103CIT11113[]
SSX2\\210497_x_at-1.218773-2.0799310.042070-4.579122SSX26757[hsa05202]
C20orf94\\236390_at1.6072482.0702930.042997-4.579304C20orf94128710[]
SLC17A1\\1560885_x_at-1.133660-2.0668630.043331-4.579369SLC17A16568[]
PCP4\\205549_at-1.410662-2.0613660.043871-4.579472PCP45121[]
GOLM1\\1558248_at1.3612492.0461920.045392-4.579757GOLM151280[]
RNASE1\\217093_at1.1360942.0378960.046243-4.579913RNASE16035[]
ZNRD1-AS\\234457_at-1.297711-2.0366700.046369-4.579935ZNRD1-ASNone[]
METTL6\\1557991_at1.3286312.0341470.046631-4.579982METTL6131965[]
LOC389634\\1560119_at1.7168402.0320550.046850-4.580021LOC389634389634[]
IL2\\207849_at-1.448060-2.0306780.046994-4.580047IL23558[hsa04060, hsa04151, hsa04630, hsa04660, hsa04672, hsa04940, hsa05142, hsa05162, hsa05166, hsa05320, hsa05321, hsa05330, \n", - "
PRLR\\211917_s_at1.4107092.0299500.047070-4.580061PRLR5618[hsa04060, hsa04080, hsa04151, hsa04630, hsa04917]
GRIK2\\1555375_at-1.422374-2.0293930.047129-4.580071GRIK22898[hsa04080, hsa04724]
RGS20\\210138_at1.4532212.0291720.047152-4.580075RGS208601[]
GP5\\211525_s_at-1.216566-2.0279480.047281-4.580098GP52814[hsa04512, hsa04611, hsa04640]
TSC2\\215624_at1.6367162.0245350.047642-4.580161TSC27249[hsa04115, hsa04150, hsa04151, hsa04152, hsa04910, hsa04919, hsa05231]
PDE6A\\206623_at1.5677742.0233910.047763-4.580183PDE6A5145[hsa00230, hsa04744]
FAM84A\\228459_at1.0976562.0221420.047896-4.580206FAM84A151354[]
LOC283868\\1564683_at1.3131712.0211210.048005-4.580225LOC283868None[]
BEND6\\1568820_a_at-0.943036-2.0194560.048183-4.580256BEND6221336[]
C21orf94\\1553519_at-1.175958-2.0168910.048458-4.580303C21orf94None[]
ACTL9\\243208_x_at1.1030292.0109670.049099-4.580413ACTL9284382[]
EFCAB6\\234732_s_at1.4125262.0066270.049574-4.580493EFCAB664800[]
KDSR\\222359_x_at1.3439632.0065280.049585-4.580495KDSR2531[hsa00600, hsa01100]
LOC100506920\\237659_at0.7768892.0055030.049697-4.580514LOC100506920None[]
SHMT1\\231701_s_at-1.117987-2.0048080.049774-4.580527SHMT16470[hsa00260, hsa00460, hsa00630, hsa00670, hsa01100, hsa01130, hsa01200, hsa01230]
" - ], - "text/plain": [ - "" - ] - }, - "execution_count": 60, - "metadata": {}, - "output_type": "execute_result" - } - ], + "outputs": [], "source": [ "from utils import Kegg\n", "# find the pathways in KEGG that match one or more of the gene_ids:\n", @@ -10976,127 +565,13 @@ }, { "cell_type": "code", - "execution_count": 61, + "execution_count": null, "metadata": { "collapsed": false, "deletable": true, "editable": true }, - "outputs": [ - { - "data": { - "text/html": [ - "\n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - "
link to pathwaynr genes matched
42hsa052024
65hsa040803
17hsa040603
56hsa011003
53hsa041513
40hsa052002
62hsa002302
45hsa049102
41hsa052032
5hsa046302
9hsa047442
32hsa041442
29hsa012302
28hsa011302
22hsa012002
19hsa049192
11hsa047242
39hsa053212
" - ], - "text/plain": [ - "" - ] - }, - "execution_count": 61, - "metadata": {}, - "output_type": "execute_result" - } - ], + "outputs": [], "source": [ "pathways_df = DataFrame(kegg.get_all_pathways_rows(), columns=['link to pathway', 'nr genes matched'])\n", "\n", @@ -11119,7 +594,7 @@ }, { "cell_type": "code", - "execution_count": 19, + "execution_count": null, "metadata": { "collapsed": true, "deletable": true, diff --git a/EXERCISE TranSMART REST API V2 (2017).ipynb b/EXERCISE TranSMART REST API V2 (2017).ipynb index 8fb86bd..7a48d1a 100644 --- a/EXERCISE TranSMART REST API V2 (2017).ipynb +++ b/EXERCISE TranSMART REST API V2 (2017).ipynb @@ -2,32 +2,13 @@ "cells": [ { "cell_type": "code", - "execution_count": 4, + "execution_count": null, "metadata": { "collapsed": false, "deletable": true, "editable": true }, - "outputs": [ - { - "name": "stdout", - "output_type": "stream", - "text": [ - "Username:admin\n", - "Password:········\n" - ] - }, - { - "data": { - "text/plain": [ - "'SUCCESS'" - ] - }, - "execution_count": 4, - "metadata": {}, - "output_type": "execute_result" - } - ], + "outputs": [], "source": [ "import getpass\n", "from transmart_api import TransmartApi\n", @@ -43,7 +24,7 @@ }, { "cell_type": "code", - "execution_count": 5, + "execution_count": null, "metadata": { "collapsed": true, "deletable": true, @@ -52,6 +33,7 @@ "outputs": [], "source": [ "import pandas\n", + "from pandas.io.json import json_normalize\n", "\n", "pandas.set_option('max_colwidth', 1000)\n", "pandas.set_option(\"display.max_rows\",100)" @@ -59,662 +41,156 @@ }, { "cell_type": "code", - "execution_count": 22, + "execution_count": null, "metadata": { "collapsed": false, "deletable": true, "editable": true }, - "outputs": [ - { - "name": "stdout", - "output_type": "stream", - "text": [ - "http://transmart-test.thehyve.net/v2/observations?constraint={\"type\":\"study_name\",\"studyId\":\"EHR\"}&type=clinical\n" - ] - } - ], + "outputs": [], "source": [ - "from pandas.io.json import json_normalize\n", - "\n", - "study_id = 'EHR'\n", - "obs = api.get_observations(study = study_id)" + "studies = api.get_studies()\n", + "json_normalize(studies['studies'])" ] }, { "cell_type": "code", - "execution_count": 7, + "execution_count": null, + "metadata": { + "collapsed": true + }, + "outputs": [], + "source": [ + "# study_id = 'EHR'\n", + "study_id = None\n", + "patient_set = 28729" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": { + "collapsed": false + }, + "outputs": [], + "source": [ + "patients = api.get_patients(study = study_id, patientSet = patient_set)\n", + "json_normalize(patients['patients'])" + ] + }, + { + "cell_type": "code", + "execution_count": null, "metadata": { "collapsed": false, "deletable": true, "editable": true }, - "outputs": [ - { - "data": { - "text/html": [ - "
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