From c4e2cac72869ce9b55e61d682452f599455d7a69 Mon Sep 17 00:00:00 2001
From: Eric Denovellis <edeno@bu.edu>
Date: Sat, 10 Feb 2024 09:35:43 -0800
Subject: [PATCH] Add MUA notebook and fix numbering.
---
docs/mkdocs.yml | 24 ++++++++++---------
...cting_Clusterless_Waveform_Features.ipynb} | 0
...ss.ipynb => 41_Decoding_Clusterless.ipynb} | 0
...s.ipynb => 42_Decoding_SortedSpikes.ipynb} | 0
...Detection.ipynb => 50_MUA_Detection.ipynb} | 0
5 files changed, 13 insertions(+), 11 deletions(-)
rename notebooks/{41_Extracting_Clusterless_Waveform_Features.ipynb => 40_Extracting_Clusterless_Waveform_Features.ipynb} (100%)
rename notebooks/{42_Decoding_Clusterless.ipynb => 41_Decoding_Clusterless.ipynb} (100%)
rename notebooks/{43_Decoding_SortedSpikes.ipynb => 42_Decoding_SortedSpikes.ipynb} (100%)
rename notebooks/{51_MUA_Detection.ipynb => 50_MUA_Detection.ipynb} (100%)
diff --git a/docs/mkdocs.yml b/docs/mkdocs.yml
index 3767f8dd4..054df7de9 100644
--- a/docs/mkdocs.yml
+++ b/docs/mkdocs.yml
@@ -43,13 +43,6 @@ theme:
nav:
- Home: index.md
- Installation: installation.md
- - Miscellaneous:
- - Overview: misc/index.md
- - FigURL: misc/figurl_views.md
- - Session Groups: misc/session_groups.md
- - Insert Data: misc/insert_data.md
- - Merge Tables: misc/merge_tables.md
- - Database Management: misc/database_management.md
- Tutorials:
- Overview: notebooks/index.md
- Intro:
@@ -61,7 +54,7 @@ nav:
- Spikes:
- Spike Sorting V0: notebooks/10_Spike_SortingV0.ipynb
- Spike Sorting V1: notebooks/10_Spike_SortingV1.ipynb
- - Curation: notebooks/11_Curation.ipynb
+ - Curation: notebooks/11_CurationV0.ipynb
- Position:
- Position Trodes: notebooks/20_Position_Trodes.ipynb
- DLC Models: notebooks/21_DLC.ipynb
@@ -72,9 +65,18 @@ nav:
- Theta: notebooks/31_Theta.ipynb
- Ripple Detection: notebooks/32_Ripple_Detection.ipynb
- Decoding:
- - Extract Clusterless: notebooks/41_Extracting_Clusterless_Waveform_Features.ipynb
- - Decoding Clusterless: notebooks/42_Decoding_Clusterless.ipynb
- - Decoding Sorted Spikes: notebooks/43_Decoding_SortedSpikes.ipynb
+ - Extracting Waveforms: notebooks/40_Extracting_Clusterless_Waveform_Features.ipynb
+ - Decoding Clusterless: notebooks/41_Decoding_Clusterless.ipynb
+ - Decoding Sorted Spikes: notebooks/42_Decoding_SortedSpikes.ipynb
+ - MUA:
+ - MUA Detection: notebooks/50_MUA_Detection.ipynb
+ - Miscellaneous:
+ - Overview: misc/index.md
+ - FigURL: misc/figurl_views.md
+ - Session Groups: misc/session_groups.md
+ - Insert Data: misc/insert_data.md
+ - Merge Tables: misc/merge_tables.md
+ - Database Management: misc/database_management.md
- API Reference: api/ # defer to gen-files + literate-nav
- How to Contribute: contribute.md
- Change Log: CHANGELOG.md
diff --git a/notebooks/41_Extracting_Clusterless_Waveform_Features.ipynb b/notebooks/40_Extracting_Clusterless_Waveform_Features.ipynb
similarity index 100%
rename from notebooks/41_Extracting_Clusterless_Waveform_Features.ipynb
rename to notebooks/40_Extracting_Clusterless_Waveform_Features.ipynb
diff --git a/notebooks/42_Decoding_Clusterless.ipynb b/notebooks/41_Decoding_Clusterless.ipynb
similarity index 100%
rename from notebooks/42_Decoding_Clusterless.ipynb
rename to notebooks/41_Decoding_Clusterless.ipynb
diff --git a/notebooks/43_Decoding_SortedSpikes.ipynb b/notebooks/42_Decoding_SortedSpikes.ipynb
similarity index 100%
rename from notebooks/43_Decoding_SortedSpikes.ipynb
rename to notebooks/42_Decoding_SortedSpikes.ipynb
diff --git a/notebooks/51_MUA_Detection.ipynb b/notebooks/50_MUA_Detection.ipynb
similarity index 100%
rename from notebooks/51_MUA_Detection.ipynb
rename to notebooks/50_MUA_Detection.ipynb