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NanoForkSpeed

Laurent Lacroix ([email protected])

About this repository

This repository contains the scripts used for all the analysis in the NanoForkSpeed (NFS) manuscript Theulot et al., 2022.
Raw data are available from ENA repository under accession number PRJEB50302.
Large files are available from the Zenodo repository under the DOI 10.5281/zenodo.5958270

  • Instructions, scripts and model used to base call BrdU in nanopore reads are in the folder BrdU_Basecalling.
  • Instructions and scripts used to detect the replication forks in the processed reads are in the folder Forks_Detection.
  • Scripts and data used to produce most of the figures of the cited manuscript are in the folder Figures_Article.