Installation error for R 4.0.0. Redhat 7.4

[as7a5]

I get the following error. I appreciate your help:

• installing source package ‘BiocNeighbors’ ...
  ** using staged installation
  ** libs
  g++ -std=gnu++11 -I"/gpfs/share/apps/R/4.0.0/lib64/R/include" -DNDEBUG -I'/gpfs/share/apps/R/4.0.0/lib64/R/library/Rcpp/include' -I'/gpfs/share/apps/R/4.0.0/lib64/R/library/RcppAnnoy/include' -I'/gpfs/share/apps/R/4.0.0/lib64/R/library/RcppHNSW/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o
  g++ -std=gnu++11 -I"/gpfs/share/apps/R/4.0.0/lib64/R/include" -DNDEBUG -I'/gpfs/share/apps/R/4.0.0/lib64/R/library/Rcpp/include' -I'/gpfs/share/apps/R/4.0.0/lib64/R/library/RcppAnnoy/include' -I'/gpfs/share/apps/R/4.0.0/lib64/R/library/RcppHNSW/include' -I/usr/local/include -fpic -g -O2 -c annoy.cpp -o annoy.o
  In file included from annoy.cpp:1:0:
  annoy.h:33:63: error: wrong number of template arguments (4, should be 5)
  typedef AnnoyIndex<Index_t, Data_t, Distance, Kiss64Random> _index;
  ^
  In file included from annoy.h:17:0,
  from annoy.cpp:1:
  /gpfs/share/apps/R/4.0.0/lib64/R/library/RcppAnnoy/include/annoylib.h:845:9: note: provided for ‘template<class S, class T, class Distance, class Random, class ThreadedBuildPolicy> class AnnoyIndex’
  class AnnoyIndex : public AnnoyIndexInterface<S, T,
  ^~~~~~~~~~
  annoy.cpp: In constructor ‘Annoy::Annoy(int, const string&, double)’:
  annoy.cpp:7:9: error: request for member ‘load’ in ‘((Annoy)this)->Annoy::obj’, which is of non-class type ‘Annoy::_index {aka int}’
  obj.load(fname.c_str());
  ^~~~
  annoy.cpp: In member function ‘MatDim_t Annoy::get_nobs() const’:
  annoy.cpp:16:16: error: request for member ‘get_n_items’ in ‘((const Annoy)this)->Annoy::obj’, which is of non-class type ‘const _index {aka const int}’
  return obj.get_n_items();
  ^~~~~~~~~~~
  annoy.cpp: In member function ‘void Annoy::find_nearest_neighbors(CellIndex_t, NumNeighbors_t, bool, bool)’:
  annoy.cpp:44:9: error: request for member ‘get_nns_by_item’ in ‘((Annoy)this)->Annoy::obj’, which is of non-class type ‘Annoy::_index {aka int}’
  obj.get_nns_by_item(c, K + 1, get_search_k(K + 1), &kept_idx, dptr); // +1, as it forgets to discard 'self'.
  ^~~~~~~~~~~~~~~
  annoy.cpp: In member function ‘void Annoy::find_nearest_neighbors(const double, NumNeighbors_t, bool, bool)’:
  annoy.cpp:86:9: error: request for member ‘get_nns_by_vector’ in ‘((Annoy*)this)->Annoy::obj’, which is of non-class type ‘Annoy::_index {aka int}’
  obj.get_nns_by_vector(holding.data(), K, get_search_k(K), &kept_idx, dptr);
  ^~~~~~~~~~~~~~~~~
  make: *** [annoy.o] Error 1
  ERROR: compilation failed for package ‘BiocNeighbors’
• removing ‘/gpfs/share/apps/R/4.0.0/lib64/R/library/BiocNeighbors’
  ERROR: dependency ‘BiocNeighbors’ is not available for package ‘scater’
• removing ‘/gpfs/share/apps/R/4.0.0/lib64/R/library/scater’
  ERROR: dependencies ‘BiocNeighbors’, ‘scater’ are not available for package ‘batchelor’
• removing ‘/gpfs/share/apps/R/4.0.0/lib64/R/library/batchelor’

[LTLA]

I'm guessing you're still on BioC 3.11. Looks like knncolle/BiocNeighbors#17; scroll down to the bottom for the solution.

If you're on BioC 3.12 or higher (check with library(BiocManager)), just update your packages.