diff --git a/apps/teca_temporal_reduction.in b/apps/teca_temporal_reduction.in index 09f39016e..b45377688 100755 --- a/apps/teca_temporal_reduction.in +++ b/apps/teca_temporal_reduction.in @@ -18,19 +18,29 @@ teca_profiler.start_event('temporal_reduction') # parse the command line parser = argparse.ArgumentParser( description='Reduce the time axis of a NetcCDF CF2 dataset ' - 'using a predfined interval and reduction operator') - -parser.add_argument('--input_regex', type=str, required=True, - help='regex matching the desired set of ' - 'input NetCDF CF2 files') + 'using a predfined interval and reduction operator', + formatter_class=lambda prog: argparse.ArgumentDefaultsHelpFormatter( + prog, max_help_position=4, width=100)) + +parser.add_argument('--input_file', type=str, required=False, + help='a teca_multi_cf_reader configuration file identifying' + ' the set of NetCDF CF2 files to process. When present' + ' data is read using the teca_multi_cf_reader. Use one' + ' of either --input_file or --input_regex.') + +parser.add_argument('--input_regex', type=str, required=False, + help='a teca_cf_reader regex identifying the set of NetCDF' + ' CF2 files to process. When present data is read' + ' using the teca_cf_reader. Use one of either' + ' --input_file or --input_regex.') parser.add_argument('--interval', type=str, default='monthly', help='interval to reduce the time axis to. One of ' - 'daily, monthly, or seasonal (monthly)') + 'daily, monthly, or seasonal') parser.add_argument('--operator', type=str, default='average', help='reduction operator to use. One of minimum, ' - 'maximum, or average (average)') + 'maximum, or average') parser.add_argument('--point_arrays', nargs='+', required=True, help='list of point centered arrays to process.') @@ -39,7 +49,7 @@ parser.add_argument('--fill_value', type=float, default=None, help='A value that identifies missing or invalid data. ' 'Specifying the fill value on the command line ' 'overrides array specific fill values stored in ' - 'the file. (None)') + 'the file.') parser.add_argument('--ignore_fill_value', default=False, action='store_true', @@ -47,40 +57,39 @@ parser.add_argument('--ignore_fill_value', 'value handling. When enabled NetCDF CF conventions ' 'are used to determine fill value. Alternativley one ' 'can explicitly provide a fill value on the command ' - 'line via the --fill_value argument. (True).') + 'line via the --fill_value argument.') parser.add_argument('--output_file', type=str, required=True, - help='file pattern for writing output netcdf ' - 'files. %%t%% will be replaced by a date/time ' - 'string or time step. See the teca_cf_writer ' - 'for more information.') + help='A path and file name pattern for the output NetCDF' + ' files. %%t%% is replaced with a human readable date' + ' and time corresponding to the time of the first time' + ' step in the file. Use --date_format to change' + ' the formatting') -parser.add_argument('--steps_per_file', type=int, default=12, +parser.add_argument('--steps_per_file', type=int, default=128, help='number of time steps to write to each output ' - 'file. (12)') + 'file') parser.add_argument('--x_axis_variable', type=str, default='lon', - help='name of the variable to use for x-coordinates ' - '(lon)') + help='name of the variable to use for x-coordinates') parser.add_argument('--y_axis_variable', type=str, default='lat', - help='name of the variable to use for y-coordinates ' - '(lat)') + help='name of the variable to use for y-coordinates') parser.add_argument('--z_axis_variable', type=str, default='', - help='name of the variable to use for z-coordinates ' - '()') + help='name of z coordinate variable. When processing 3D set this to' + ' the variable containing vertical coordinates. When empty the' + ' data will be treated as 2D.') parser.add_argument('--t_axis_variable', type=str, default='time', - help='name of the variable to use for t-coordinates ' - '(time)') + help='name of the variable to use for t-coordinates') parser.add_argument('--n_threads', type=int, default=2, help='Number of threads to use when stremaing the ' - 'reduction (2)') + 'reduction') -parser.add_argument('--verbose', type=int, default=1, - help='enable verbose mode. (1)') +parser.add_argument('--verbose', type=int, default=0, + help='enable verbose mode.') # prevent spew when running under mpi try: @@ -104,7 +113,7 @@ t_axis_var = args.t_axis_variable verbose = args.verbose if verbose and rank == 0: - sys.stderr.write('testing on %d ranks' % (n_ranks)) + sys.stderr.write('running on %d ranks' % (n_ranks)) sys.stderr.write('n_threads=%d\n' % (n_threads)) sys.stderr.write('steps_per_file=%d\n' % (steps_per_file)) sys.stderr.write('interval=%s\n' % (interval))