upgrading the package may lead to version incompatibilities?

[alecristia]

I was using a script that gave me:

Traceback (most recent call last):
File "../../code/getr.py", line 5, in
from ChildProject.metrics import gamma, segments_to_grid, grid_to_vector, vectors_to_annotation_task
ModuleNotFoundError: No module named 'ChildProject.metrics'

So I checked my versions:
datalad 0.14.0
ChildProject-0.0.1-py3.6.egg-inf

I figured perhaps ChildProject was old, so I thought I needed to force upgrade:

 pip3 uninstall ChildProject
 pip3 install git+https://github.com/LAAC-LSCP/ChildProject.git

Collecting git+https://github.com/LAAC-LSCP/ChildProject.git
Cloning https://github.com/LAAC-LSCP/ChildProject.git to /private/var/folders/mx/f_gpzmq105x8sgqfdtbr4zrr0000gn/T/pip-req-build-1fhifnck
Requirement already satisfied: pandas>=0.25.0 in /Users/acristia/ChildProjectVenv/lib/python3.6/site-packages (from ChildProject==0.0.1) (1.1.4)
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Collecting pylangacq (from ChildProject==0.0.1)
Downloading https://files.pythonhosted.org/packages/cd/ed/932dd6a1fb069944ea28e13cbc7f1d8aae09aef82af2a3dc14ddb6fad155/pylangacq-0.14.1-py3-none-any.whl (68kB)
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Collecting librosa (from ChildProject==0.0.1)
Downloading https://files.pythonhosted.org/packages/54/19/a0e2bdc94bc0d1555e4f9bc4099a0751da83fa6e1e6157ec005564f8a98a/librosa-0.8.1-py3-none-any.whl (203kB)
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Collecting importlib-resources (from ChildProject==0.0.1)
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Collecting dataclasses; python_version < "3.7" (from pylangacq->ChildProject==0.0.1)
Downloading https://files.pythonhosted.org/packages/fe/ca/75fac5856ab5cfa51bbbcefa250182e50441074fdc3f803f6e76451fab43/dataclasses-0.8-py3-none-any.whl
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typer 0.3.2 has requirement click<7.2.0,>=7.1.1, but you'll have click 8.0.1 which is incompatible.
Installing collected packages: dataclasses, pylangacq, joblib, pycparser, cffi, soundfile, pyparsing, packaging, audioread, pooch, llvmlite, numba, decorator, scipy, resampy, threadpoolctl, scikit-learn, librosa, pysoundfile, regex, click, nltk, sklearn, importlib-resources, scs, qdldl, osqp, dill, multiprocess, ecos, cvxpy, colorama, shellingham, typer, kiwisolver, cycler, pillow, matplotlib, sortedcontainers, pyannote.core, pyannote.database, TextGrid, pygamma-agreement, ChildProject
Running setup.py install for audioread ... done
Running setup.py install for resampy ... done
Running setup.py install for sklearn ... done
Running setup.py install for scs ... done
Running setup.py install for ChildProject ... done
Successfully installed ChildProject-0.0.1 TextGrid-1.5 audioread-2.1.9 cffi-1.14.5 click-8.0.1 colorama-0.4.4 cvxpy-1.0.25 cycler-0.10.0 dataclasses-0.8 decorator-5.0.9 dill-0.3.3 ecos-2.0.7.post1 importlib-resources-5.1.4 joblib-1.0.1 kiwisolver-1.3.1 librosa-0.8.1 llvmlite-0.36.0 matplotlib-3.3.4 multiprocess-0.70.11.1 nltk-3.6.2 numba-0.53.1 osqp-0.6.2.post0 packaging-20.9 pillow-8.2.0 pooch-1.3.0 pyannote.core-4.1 pyannote.database-4.1 pycparser-2.20 pygamma-agreement-0.1.6 pylangacq-0.14.1 pyparsing-2.4.7 pysoundfile-0.9.0.post1 qdldl-0.1.5.post0 regex-2021.4.4 resampy-0.2.2 scikit-learn-0.24.2 scipy-1.5.4 scs-2.1.3 shellingham-1.4.0 sklearn-0.0 sortedcontainers-2.4.0 soundfile-0.10.3.post1 threadpoolctl-2.1.0 typer-0.3.2

-- which fixed my original error (now I have childproject.metrics), but I now get an error when I try to run the sampler:

Traceback (most recent call last):
File "/Users/acristia/ChildProjectVenv/bin/child-project", line 6, in
from pkg_resources import load_entry_point
File "/Users/acristia/ChildProjectVenv/lib/python3.6/site-packages/pkg_resources/init.py", line 3088, in
@_call_aside
File "/Users/acristia/ChildProjectVenv/lib/python3.6/site-packages/pkg_resources/init.py", line 3072, in _call_aside
f(*args, **kwargs)
File "/Users/acristia/ChildProjectVenv/lib/python3.6/site-packages/pkg_resources/init.py", line 3101, in _initialize_master_working_set
working_set = WorkingSet._build_master()
File "/Users/acristia/ChildProjectVenv/lib/python3.6/site-packages/pkg_resources/init.py", line 576, in _build_master
return cls._build_from_requirements(requires)
File "/Users/acristia/ChildProjectVenv/lib/python3.6/site-packages/pkg_resources/init.py", line 589, in _build_from_requirements
dists = ws.resolve(reqs, Environment())
File "/Users/acristia/ChildProjectVenv/lib/python3.6/site-packages/pkg_resources/init.py", line 783, in resolve
raise VersionConflict(dist, req).with_context(dependent_req)
pkg_resources.ContextualVersionConflict: (click 8.0.1 (/Users/acristia/ChildProjectVenv/lib/python3.6/site-packages), Requirement.parse('click<7.2.0,>=7.1.1'), {'typer'})

I think this may not really be a question for here, but if there are any tips to try to keep all the mutually compatible versions together, that would be great!

[lucasgautheron]

Can you try:

pip3 install git+https://github.com/LAAC-LSCP/ChildProject.git --upgrade

?

[alecristia]

that ran ok, no errors other than the same as before: "typer 0.3.2 has requirement click<7.2.0,>=7.1.1, but you'll have click 8.0.1 which is incompatible."

and so the sampler throws the same error as before:

Traceback (most recent call last):
File "/Users/acristia/ChildProjectVenv/bin/child-project", line 6, in
from pkg_resources import load_entry_point
File "/Users/acristia/ChildProjectVenv/lib/python3.6/site-packages/pkg_resources/init.py", line 3088, in
@_call_aside
File "/Users/acristia/ChildProjectVenv/lib/python3.6/site-packages/pkg_resources/init.py", line 3072, in _call_aside
f(*args, **kwargs)
File "/Users/acristia/ChildProjectVenv/lib/python3.6/site-packages/pkg_resources/init.py", line 3101, in _initialize_master_working_set
working_set = WorkingSet._build_master()
File "/Users/acristia/ChildProjectVenv/lib/python3.6/site-packages/pkg_resources/init.py", line 576, in _build_master
return cls._build_from_requirements(requires)
File "/Users/acristia/ChildProjectVenv/lib/python3.6/site-packages/pkg_resources/init.py", line 589, in _build_from_requirements
dists = ws.resolve(reqs, Environment())
File "/Users/acristia/ChildProjectVenv/lib/python3.6/site-packages/pkg_resources/init.py", line 783, in resolve
raise VersionConflict(dist, req).with_context(dependent_req)
pkg_resources.ContextualVersionConflict: (click 8.0.1 (/Users/acristia/ChildProjectVenv/lib/python3.6/site-packages), Requirement.parse('click<7.2.0,>=7.1.1'), {'typer'})

[lucasgautheron]

One way of solving the problem for you (temporarily) is to do: pip install "click<7.2.0,>=7.1.1" --upgrade

I could enforce this constraint into the package setup configuration, BUT I am not sure this is the best way to handle it in the long term...

[alecristia]

this is fixed with pip install "click<7.2.0,>=7.1.1" --upgrade