Issue with the latest version of nnUnet ?

[Nilser3]

Description

I had used this great extension before upgrading my nnUnet (April 2024) and everything worked fine,
now (that I have updated my nnUnet) when I want to run the same model I ran before, I get this error,

PS. the installation was also complicated, I had this message over and over again:

Start nnUNet install with requirements : nnunetv22.1
- Uninstall nnunetv2...
- Installing nnunetv22.1 --no-deps...
Install returned non-zero exit status : Command '['/home/nlaines/DEV/Slicer-5.7.0-2024-12-06-linux-amd64/bin/../bin/PythonSlicer', '-m', 'pip', 'install', 'nnunetv22.1', '--no-deps']' returned non-zero exit status 1.. Attempting to continue...
Error occurred during install : nnunetv2
Install failed.

Is it possible that it is a compatibility problem with the latest version of nnUnetv2?

thanks

Best,

Nilser

[Thibault-Pelletier]

Hi @Nilser3 ,

Thank you for reporting this issue.

You are correct, the latest version of nnUNet fails to correctly install for Python 3.9 (Python version shipped with 3D Slicer).
This problem is still linked to acvl_utils for Python 3.9.

An issue was opened by James Butler on the acvl_utils repo here : MIC-DKFZ/acvl_utils#4

You can follow the related issue on Slicer here : https://discourse.slicer.org/t/dental-segmantator/40519/2

Best,
Thibault

[Nilser3]

Hi @Thibault-Pelletier

Thank you !

I remain vigilant to the development of these issues,
Thanks!

Best,

Nilser