diff --git a/added_reactions/tym.py b/added_reactions/tym.py new file mode 100644 index 0000000..11d477d --- /dev/null +++ b/added_reactions/tym.py @@ -0,0 +1,27 @@ +# Tyramine (Tym) reactions + +# EC Number 4.1.1.25 https://biocyc.org/META/NEW-IMAGE?type=REACTION&object=TYROSINE-DECARBOXYLASE-RXN + +tyr = model.metabolites.get_by_id("tyr__L_c") +h = model.metabolites.get_by_id("h_c") +co2 = model.metabolites.get_by_id("co2_c") +tym = Metabolite( + "tym_c", + formula="C8H12NO", + name="Tyramine", + compartment="c" +) + +tyrosine_decarboxylase = Reaction("TDC") +tyrosine_decarboxylase.name = "Tyrosine Decarboxylase Reaction" +tyrosine_decarboxylase.add_metabolites( + { + tyr: -1.0, + h: -1.0, + co2: 1.0, + tym: 1.0 + } +) + +model.add_reactions([tyrosine_decarboxylase]) +model.optimize().objective_value