[PRE REVIEW]: Structure-based bioinformatics with BiochemicalAlgorithms.jl

[editorialbot]

Submitting author: @jeleclaire (Jennifer Leclaire)
Repository: https://github.com/hildebrandtlab/BiochemicalAlgorithms.jl
Branch with paper.md (empty if default branch): paper
Version: v0.4.6
Editor: @fcdimitr
Reviewers: Pending
Managing EiC: Luca Ferranti

Status

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Markdown: [![status](https://proceedings.juliacon.org/papers/bff806969c99b6b39fac6fffadd9055a/status.svg)](https://proceedings.juliacon.org/papers/bff806969c99b6b39fac6fffadd9055a)

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Software report:

github.com/AlDanial/cloc v 1.98  T=0.40 s (503.0 files/s, 150297.2 lines/s)
-------------------------------------------------------------------------------
Language                     files          blank        comment           code
-------------------------------------------------------------------------------
INI                              7            137            254          19999
JSON                            46              1              0          17640
Julia                           85           2646           1994          10166
TeX                             16            354            183           2828
Markdown                        16            288              0           1060
Text                             8              0              0            522
Python                           3             95             14            413
C++                              5            111             52            344
YAML                             8              6              7            187
TOML                             3              5              0             84
Ruby                             1              8              4             45
Lisp                             1              3              0              8
-------------------------------------------------------------------------------
SUM:                           199           3654           2508          53296
-------------------------------------------------------------------------------

Commit count by author:

   366	Thomas Kemmer
   102	Andreas Hildebrandt
    53	Jenny Leclaire
    39	CompatHelper Julia
     3	Jenny@zovirax
     2	jeleclaire
     1	Jennifer Leclaire
     1	Joe Greener
     1	Samuel Hüttel

[editorialbot]

Paper file info:

📄 Wordcount for paper.tex is 100

🔴 Failed to discover a Statement of need section in paper

[editorialbot]

License info:

✅ License found: MIT License (Valid open source OSI approved license)

[editorialbot]

Reference check summary (note 'MISSING' DOIs are suggestions that need verification):

✅ OK DOIs

- 10.1093/bib/bbaa261 is OK
- 10.1002/jcc.21334 is OK
- 10.1002/jcc.21256 is OK
- 10.1093/nar/gkac1234 is OK
- 10.1021/acs.jctc.6b00049 is OK
- 10.1093/bioinformatics/btaa502 is OK
- 10.1186/1471-2105-11-531 is OK
- 10.1093/bioinformatics/16.9.815 is OK
- 10.18637/jss.v107.i04 is OK

🟡 SKIP DOIs

- No DOI given, and none found for title: The Protein Data Bank
- No DOI given, and none found for title: Improved protein structure prediction using potent...
- No DOI given, and none found for title: Protein Preparation Wizard
- No DOI given, and none found for title: LiveDesign: Your complete digital molecular design...
- No DOI given, and none found for title: JuliaMolSim: Molecular Simulation in Julia
- No DOI given, and none found for title: BioJulia: Julia Packages for Bioinformatics and Co...
- No DOI given, and none found for title: Differentiable simulation to develop molecular dyn...
- No DOI given, and none found for title: What Julia Aims to Accomplish? - The Two-Language ...
- No DOI given, and none found for title: Two Language Problem. What is it?
- No DOI given, and none found for title: Qt 5
- No DOI given, and none found for title: OpenGL - The Industry Standard for High Performanc...
- No DOI given, and none found for title: BALL Project Tutorial
- No DOI given, and none found for title: Robust benchmarking in noisy environments
- No DOI given, and none found for title: PkgBenchmark.jl: Benchmarking tools for Julia pack...
- No DOI given, and none found for title: TestItemRunner.jl: Run Julia test items
- No DOI given, and none found for title: Design Patterns: Elements of Reusable Object-Orien...
- No DOI given, and none found for title: ProtoSyn.jl

❌ MISSING DOIs

- 10.1109/2.660187 may be a valid DOI for title: Scripting: Higher-Level Programming for the 21st C...

❌ INVALID DOIs

- 10.21105/joss.00776 is INVALID

[lucaferranti]

@editorialbot assign @fcdimitr as editor

[editorialbot]

Assigned! @fcdimitr is now the editor

[editorialbot]

👉📄 Download article proof 📄 View article proof on GitHub 📄 👈

[lucaferranti]

@editorialbot assign @fcdimitr as editor

[editorialbot]

Assigned! @fcdimitr is now the editor