diff --git a/README.md b/README.md index ebe37ae..1d39cc6 100644 --- a/README.md +++ b/README.md @@ -30,7 +30,7 @@ Monday 11.00-11.45 (remote) | 19.10.2020 | Hubert | RNA-seq quantification | RSEM | | | R-squared and model selection in linear models, Mallow Cp statistic, AIC, BIC criterion | | 26.10.2020 | Mark | edgeR+friends 1 | basic edgeR/voom | [DUBStepR: correlation-based feature selection for clustering single-cell RNA sequencing data](https://www.biorxiv.org/content/10.1101/2020.10.07.330563v1.full.pdf) (TK, SS, TE) | [From expression footprints to causal pathways: contextualizing large signaling networks with CARNIVAL](https://www.nature.com/articles/s41540-019-0118-z) (DC, LM) | | | 02.11.2020 | Mark | edgeR+friends 2 | GLM/DEXSeq |[Redefining CpG islands using hidden Markov models](https://academic.oup.com/biostatistics/article/11/3/499/256898) (Zhiwei Dou, Huixin Jin, Peiying Cai)| [Causal Inference in Genetic Trio Studies](https://arxiv.org/abs/2002.09644) (ZS, GW, LN) | | -| 09.11.2020 | Kathi | hands-on session #1: RNA-seq | FASTQC/Salmon/etc. | [Statistical significance for genomewide studies](https://www.pnas.org/content/100/16/9440) (RA, HH) | [Identifying signaling genes in spatial single cell expression data](https://www.biorxiv.org/content/10.1101/2020.07.27.221465v2) (YM, KD, GJ) | | +| 09.11.2020 | Kathi | hands-on session #1: RNA-seq | FASTQC/Salmon/etc. | [Statistical significance for genomewide studies](https://www.pnas.org/content/100/16/9440) (RA, HH, JR) | [Identifying signaling genes in spatial single cell expression data](https://www.biorxiv.org/content/10.1101/2020.07.27.221465v2) (YM, KD, GJ) | | | 16.11.2020 | Hubert | single-cell 1: preprocessing, dim. reduction, clustering | | [Testing hypotheses about the microbiome using the linear decomposition model](https://www.biorxiv.org/content/10.1101/229831v3.full.pdf+html) (FS,BO,SA) | [Generalizing RNA velocity to transient cell states through dynamical modeling](https://www.nature.com/articles/s41587-020-0591-3?proof=t) (DP, EH) | | | 23.11.2020 | Helena | hands-on session #2: cytometry | cytof null comparison | [Genome-wide detection of intervals of genetic heterogeneity associated with complex traits](https://academic.oup.com/bioinformatics/article/31/12/i240/216593) (Richard Affolter, Philip Hartout, Martin Emons) | [Empirical Bayes Analysis of a Microarray Experiment](https://www.tandfonline.com/doi/abs/10.1198/016214501753382129) (Jennifer Probst, Eljas Röllin, Lisa Herzog) | | | 30.11.2020 | Mark | single-cell 2: cell type definition, differential state | scRNA exercise 2 | [A Bayesian mixture model for the analysis of allelic expression in single cells](https://doi.org/10.1038/s41467-019-13099-0) (Sneha-Sundar,SmaragdaDimitrakopoulou,marinapanteli) | [scMET: Bayesian modelling of DNA methylation heterogeneity at single-cell resolution](https://www.biorxiv.org/content/10.1101/2020.07.10.196816v2) (MW, RM, DW) | |