Dockerfile

#  Copyright (c) 2014-2016, Centre for Genomic Regulation (CRG).
#  Copyright (c) 2014-2016, Jose Espinosa-Carrasco and the respective authors.
#
#  This file is part of Pergola.
#
#  Pergola is free software: you can redistribute it and/or modify
#  it under the terms of the GNU General Public License as published by
#  the Free Software Foundation, either version 3 of the License, or
#  (at your option) any later version.
#
#  Pergola is distributed in the hope that it will be useful,
#  but WITHOUT ANY WARRANTY; without even the implied warranty of
#  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
#  GNU General Public License for more details.
#
#  You should have received a copy of the GNU General Public License
#  along with Pergola.  If not, see <http://www.gnu.org/licenses/>.
#
############################################################
# Dockerfile to wrap up r and libraries that I commonly use
# Based on r-base 
############################################################

# our R base image
FROM r-base

MAINTAINER Jose Espinosa-Carrasco <espinosacarrascoj@gmail.com>

RUN echo 'install.packages(c("ggplot2", "plyr", "reshape2", "RColorBrewer", "scales", "FactoMineR", \
"Hmisc", "cowplot", "shiny"), repos="http://cran.us.r-project.org", dependencies=TRUE)' > /tmp/packages.R \
&& Rscript /tmp/packages.R

# create an R user
#ENV HOME /home/jespinosa
#RUN useradd --create-home --home-dir $HOME jespinosa \
#    && chown -R jespinosa:jespinosa $HOME