From 97fa79a2a1067ac51780001246707f25f00c8eeb Mon Sep 17 00:00:00 2001 From: Kalyan Chakravarthy Date: Mon, 30 Dec 2024 19:47:05 +0530 Subject: [PATCH 01/10] update pydantic to version 2.9.2 and remove specific version for johnsnowlabs --- poetry.lock | 439 ++++++++++++++++++++------------- sphinx/sphinx_requirements.txt | 4 +- 2 files changed, 272 insertions(+), 171 deletions(-) diff --git a/poetry.lock b/poetry.lock index b1a82f966..f88487e39 100644 --- a/poetry.lock +++ b/poetry.lock @@ -58,113 +58,114 @@ requests = "*" [package.extras] aws = ["aws-requests-auth", "boto3", "sagemaker"] +[[package]] +name = "aiohappyeyeballs" +version = "2.4.4" +description = "Happy Eyeballs for asyncio" +optional = true +python-versions = ">=3.8" +files = [ + {file = "aiohappyeyeballs-2.4.4-py3-none-any.whl", hash = "sha256:a980909d50efcd44795c4afeca523296716d50cd756ddca6af8c65b996e27de8"}, + {file = "aiohappyeyeballs-2.4.4.tar.gz", hash = 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lifecycle" optional = true python-versions = ">=3.9" files = [ - {file = "mlflow-2.18.0-py3-none-any.whl", hash = "sha256:844a5c26ce8f83bbb5e038a7ce5a47be62edee89ad13ecf98ae2dbf0db9fa58f"}, - {file = "mlflow-2.18.0.tar.gz", hash = "sha256:90f0d04b02e35c0f2fccc88e892e37b84871cb4f766acd3ef904c1c30be63ee3"}, + {file = "mlflow-2.19.0-py3-none-any.whl", hash = "sha256:875364a9c37d2e6e5b6256a3cee314e1e6ada0c253f46b6fcb37d986a2dc2514"}, + {file = "mlflow-2.19.0.tar.gz", hash = "sha256:b860e9d2599a32460968a0a90efdf960b6a6237a08bff44cc5508830017cf70e"}, ] [package.dependencies] @@ -2897,7 +2897,7 @@ Jinja2 = [ ] markdown = ">=3.3,<4" matplotlib = "<4" -mlflow-skinny = "2.18.0" +mlflow-skinny = "2.19.0" numpy = "<3" pandas = "<3" pyarrow = ">=4.0.0,<19" @@ -2910,23 +2910,23 @@ waitress = {version = "<4", markers = "platform_system == \"Windows\""} aliyun-oss = ["aliyunstoreplugin"] databricks = ["azure-storage-file-datalake (>12)", "boto3 (>1)", "botocore", "google-cloud-storage (>=1.30.0)"] 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base64 (~> 0.2.0) + simpleidn (~> 0.2.1) em-websocket (0.5.3) eventmachine (>= 0.12.9) http_parser.rb (~> 0) ethon (0.16.0) ffi (>= 1.15.0) eventmachine (1.2.7) - eventmachine (1.2.7-x64-mingw32) - execjs (2.8.1) - faraday (2.7.4) - faraday-net_http (>= 2.0, < 3.1) - ruby2_keywords (>= 0.0.4) - faraday-net_http (3.0.2) - ffi (1.15.5) + execjs (2.10.0) + faraday (2.12.2) + faraday-net_http (>= 2.0, < 3.5) + json + logger + faraday-net_http (3.4.0) + net-http (>= 0.5.0) + ffi (1.17.1) + ffi (1.17.1-arm64-darwin) + ffi (1.17.1-x86_64-darwin) forwardable-extended (2.6.0) gemoji (3.0.1) github-pages (226) @@ -198,23 +203,29 @@ GEM gemoji (~> 3.0) html-pipeline (~> 2.2) jekyll (>= 3.0, < 5.0) + json (2.9.1) kramdown (2.3.2) rexml kramdown-parser-gfm (1.1.0) kramdown (~> 2.0) liquid (4.0.3) - listen (3.8.0) + listen (3.9.0) rb-fsevent (~> 0.10, >= 0.10.3) rb-inotify (~> 0.9, >= 0.9.10) + logger (1.6.4) mercenary (0.3.6) - mini_portile2 (2.8.1) minima (2.5.1) jekyll (>= 3.5, < 5.0) jekyll-feed 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(>=1.6.0)", "scikit-image (>=0.17.2)", "seaborn (>=0.9.0)"] +install = ["joblib (>=1.2.0)", "numpy (>=1.19.5)", "scipy (>=1.6.0)", "threadpoolctl (>=3.1.0)"] +maintenance = ["conda-lock (==2.5.6)"] +tests = ["black (>=24.3.0)", "matplotlib (>=3.3.4)", "mypy (>=1.9)", "numpydoc (>=1.2.0)", "pandas (>=1.1.5)", "polars (>=0.20.30)", "pooch (>=1.6.0)", "pyamg (>=4.0.0)", "pyarrow (>=12.0.0)", "pytest (>=7.1.2)", "pytest-cov (>=2.9.0)", "ruff (>=0.5.1)", "scikit-image (>=0.17.2)"] [[package]] name = "scipy" @@ -6540,4 +6570,4 @@ transformers = ["accelerate", "datasets", "torch", "transformers"] [metadata] lock-version = "2.0" python-versions = ">=3.9,<4.0" -content-hash = "229c051db87f60bf66236f77ae1b727a255781ae40b3485d118ea1646bff35d3" +content-hash = "66623bb353b9ecdbe7b3b5d7bcdd1a9457d95400055a4eeb2387aa94f5b127f0" diff --git a/pyproject.toml b/pyproject.toml index 849113be2..c59c2d7a3 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -107,7 +107,7 @@ ipdb = "^0.13.13" pytest = "^7.4.0" taskipy = "^1.11.0" en-core-web-sm = { url = "https://github.com/explosion/spacy-models/releases/download/en_core_web_sm-3.8.0/en_core_web_sm-3.8.0.tar.gz" } -black = "^23.3.0" +black = "^24.10.0" pyproject-flake8 = "<6.0.0" pre-commit = "^3.3.3" pydocstyle = "^6.3.0" From 0697a0cad94be59f801441f21e0a4da7e83e70dd Mon Sep 17 00:00:00 2001 From: Kalyan Chakravarthy Date: Fri, 3 Jan 2025 19:30:15 +0530 Subject: [PATCH 10/10] refactor: clean up whitespace and improve code readability across multiple files --- langtest/augmentation/base.py | 4 +-- langtest/evaluation/__init__.py | 1 - langtest/langtest.py | 18 +++++------ langtest/metrics/string_distance.py | 1 - langtest/modelhandler/__init__.py | 8 +++-- langtest/modelhandler/modelhandler.py | 8 +++-- langtest/tasks/task.py | 25 +++++++++------ langtest/transform/accuracy.py | 8 +++-- langtest/transform/fairness.py | 8 +++-- langtest/transform/grammar.py | 14 ++++---- langtest/transform/robustness.py | 46 ++++++++++++++++----------- langtest/transform/security.py | 1 - langtest/transform/sensitivity.py | 12 ++++--- langtest/transform/sycophancy.py | 12 ++++--- langtest/types.py | 24 ++++++++++---- langtest/utils/benchmark_utils.py | 1 - langtest/utils/custom_types/sample.py | 1 - langtest/utils/number_to_word.py | 26 +++++++-------- langtest/utils/report_utils.py | 6 ++-- tests/test_datasource.py | 1 - 20 files changed, 128 insertions(+), 97 deletions(-) diff --git a/langtest/augmentation/base.py b/langtest/augmentation/base.py index 2767df6cb..8d07460c7 100644 --- a/langtest/augmentation/base.py +++ b/langtest/augmentation/base.py @@ -402,9 +402,7 @@ def fix( new_data = ( data.copy() if isinstance(data, (pd.DataFrame, pd.Series)) - else copy.deepcopy(data) - if append_original - else [] + else copy.deepcopy(data) if append_original else [] ) self.__search_results = self.search_sample_results(data) diff --git a/langtest/evaluation/__init__.py b/langtest/evaluation/__init__.py index e0f5b131e..c3750a9d0 100644 --- a/langtest/evaluation/__init__.py +++ b/langtest/evaluation/__init__.py @@ -77,7 +77,6 @@ async def aevaluate( return EvaluationResult(0.0, 0.0, 0.0, 0.0, 0.0) class LangtestRetrieverEvaluator(RetrieverEvaluator): - """ A class for evaluating the performance of a retriever model against a set of test cases and configurations. diff --git a/langtest/langtest.py b/langtest/langtest.py index cf89a2ff8..a90f0a30d 100644 --- a/langtest/langtest.py +++ b/langtest/langtest.py @@ -437,9 +437,9 @@ def load_checkpoints(cls, task, model, save_checkpoints_dir: str) -> "Harness": checkpoint_folder=dataset_checkpoint_dir ) harness._checkpoints[dataset_name] = checkpoint_manager.load_checkpoint() - harness._testcases[ - dataset_name - ] = checkpoint_manager.load_remaining_batch() + harness._testcases[dataset_name] = ( + checkpoint_manager.load_remaining_batch() + ) harness.batches[dataset_name] = checkpoint_manager.load_batches() elif isinstance(model, dict): @@ -458,12 +458,12 @@ def load_checkpoints(cls, task, model, save_checkpoints_dir: str) -> "Harness": checkpoint_manager = CheckpointManager( checkpoint_folder=model_checkpoint_dir ) - harness._checkpoints[ - model_name["model"] - ] = checkpoint_manager.load_checkpoint() - harness._testcases[ - model_name["model"] - ] = checkpoint_manager.load_remaining_batch() + harness._checkpoints[model_name["model"]] = ( + checkpoint_manager.load_checkpoint() + ) + harness._testcases[model_name["model"]] = ( + checkpoint_manager.load_remaining_batch() + ) harness.batches[model_name["model"]] = checkpoint_manager.load_batches() return harness diff --git a/langtest/metrics/string_distance.py b/langtest/metrics/string_distance.py index dc541171c..28aa04fc4 100644 --- a/langtest/metrics/string_distance.py +++ b/langtest/metrics/string_distance.py @@ -4,7 +4,6 @@ class StringDistance: - """ A class for calculating various string distance metrics. """ diff --git a/langtest/modelhandler/__init__.py b/langtest/modelhandler/__init__.py index da17ad3f8..173bdc1cc 100644 --- a/langtest/modelhandler/__init__.py +++ b/langtest/modelhandler/__init__.py @@ -36,9 +36,11 @@ import langchain LANGCHAIN_HUBS = { - RENAME_HUBS.get(hub.lower(), hub.lower()) - if hub.lower() in RENAME_HUBS - else hub.lower(): hub + ( + RENAME_HUBS.get(hub.lower(), hub.lower()) + if hub.lower() in RENAME_HUBS + else hub.lower() + ): hub for hub in langchain.llms.__all__ } INSTALLED_HUBS += list(LANGCHAIN_HUBS.keys()) diff --git a/langtest/modelhandler/modelhandler.py b/langtest/modelhandler/modelhandler.py index 3f0efcc3e..cdef6da1d 100644 --- a/langtest/modelhandler/modelhandler.py +++ b/langtest/modelhandler/modelhandler.py @@ -17,9 +17,11 @@ import langchain.llms LANGCHAIN_HUBS = { - RENAME_HUBS.get(hub.lower(), hub.lower()) - if hub.lower() in RENAME_HUBS - else hub.lower(): hub + ( + RENAME_HUBS.get(hub.lower(), hub.lower()) + if hub.lower() in RENAME_HUBS + else hub.lower() + ): hub for hub in langchain.llms.__all__ } else: diff --git a/langtest/tasks/task.py b/langtest/tasks/task.py index d2c284430..56464ab12 100644 --- a/langtest/tasks/task.py +++ b/langtest/tasks/task.py @@ -249,12 +249,17 @@ def create_sample( word=token, start=cursor, end=cursor + len(token), - pos_tag=row_data[column_mapper[pos_tag]][token_indx] - if pos_tag in column_mapper and column_mapper[pos_tag] in row_data - else None, - chunk_tag=row_data[column_mapper[chunk_tag]][token_indx] - if chunk_tag in column_mapper and column_mapper[chunk_tag] in row_data - else None, + pos_tag=( + row_data[column_mapper[pos_tag]][token_indx] + if pos_tag in column_mapper and column_mapper[pos_tag] in row_data + else None + ), + chunk_tag=( + row_data[column_mapper[chunk_tag]][token_indx] + if chunk_tag in column_mapper + and column_mapper[chunk_tag] in row_data + else None + ), ) ) cursor += len(token) + 1 # +1 to account for the white space @@ -302,9 +307,11 @@ def create_sample( if not isinstance(labels, list): labels = [str(labels)] labels = [ - samples.SequenceLabel(label=label, score=1.0) - if isinstance(label, str) - else label + ( + samples.SequenceLabel(label=label, score=1.0) + if isinstance(label, str) + else label + ) for label in labels ] else: diff --git a/langtest/transform/accuracy.py b/langtest/transform/accuracy.py index f8288a784..182a316d2 100644 --- a/langtest/transform/accuracy.py +++ b/langtest/transform/accuracy.py @@ -235,9 +235,11 @@ def predict_summarization(sample): if kwargs["is_default"]: y_pred = y_pred.apply( - lambda x: "1" - if x in ["pos", "LABEL_1", "POS"] - else ("0" if x in ["neg", "LABEL_0", "NEG"] else x) + lambda x: ( + "1" + if x in ["pos", "LABEL_1", "POS"] + else ("0" if x in ["neg", "LABEL_0", "NEG"] else x) + ) ) supported_tests = cls.available_tests() diff --git a/langtest/transform/fairness.py b/langtest/transform/fairness.py index 71e10ef03..8bd2c5dcf 100644 --- a/langtest/transform/fairness.py +++ b/langtest/transform/fairness.py @@ -228,9 +228,11 @@ def predict_summarization(sample: Sample): if kwargs["is_default"]: y_pred = y_pred.apply( - lambda x: "1" - if x in ["pos", "LABEL_1", "POS"] - else ("0" if x in ["neg", "LABEL_0", "NEG"] else x) + lambda x: ( + "1" + if x in ["pos", "LABEL_1", "POS"] + else ("0" if x in ["neg", "LABEL_0", "NEG"] else x) + ) ) grouped_label[gender] = [y_true, y_pred] diff --git a/langtest/transform/grammar.py b/langtest/transform/grammar.py index a5a1ef7e4..29224b803 100644 --- a/langtest/transform/grammar.py +++ b/langtest/transform/grammar.py @@ -67,13 +67,15 @@ def transform(self) -> List[Sample]: if str(TestFactory.task) in ("question-answering"): _ = [ - sample.transform( - test_func, - params.get("parameters", {}), - prob=params.pop("prob", 1.0), + ( + sample.transform( + test_func, + params.get("parameters", {}), + prob=params.pop("prob", 1.0), + ) + if hasattr(sample, "transform") + else sample ) - if hasattr(sample, "transform") - else sample for sample in data_handler_copy ] transformed_samples = data_handler_copy diff --git a/langtest/transform/robustness.py b/langtest/transform/robustness.py index 7ab8d87dc..ba6eba2d5 100644 --- a/langtest/transform/robustness.py +++ b/langtest/transform/robustness.py @@ -132,13 +132,15 @@ def transform(self) -> List[Sample]: and test_name != "multiple_perturbations" ): _ = [ - sample.transform( - test_func, - params.get("parameters", {}), - prob=params.pop("prob", 1.0), + ( + sample.transform( + test_func, + params.get("parameters", {}), + prob=params.pop("prob", 1.0), + ) + if hasattr(sample, "transform") + else sample ) - if hasattr(sample, "transform") - else sample for sample in data_handler_copy ] transformed_samples = data_handler_copy @@ -163,14 +165,16 @@ def transform(self) -> List[Sample]: "parameters" ] = {"accent_map": {v: k for k, v in A2B_DICT.items()}} _ = [ - sample.transform( - func=test_func, - params=self.tests, - prob=prob, - perturbations=perturbations, + ( + sample.transform( + func=test_func, + params=self.tests, + prob=prob, + perturbations=perturbations, + ) + if hasattr(sample, "transform") + else sample ) - if hasattr(sample, "transform") - else sample for sample in data_handler_copy ] transformed_samples_perturbation = copy.deepcopy( @@ -178,9 +182,11 @@ def transform(self) -> List[Sample]: ) # Create a deep copy if perturbation_number != "": test_type = "-".join( - str(perturbation) - if not isinstance(perturbation, dict) - else next(iter(perturbation)) + ( + str(perturbation) + if not isinstance(perturbation, dict) + else next(iter(perturbation)) + ) for perturbation in perturbations ) for sample in transformed_samples_perturbation: @@ -219,9 +225,11 @@ def transform(self) -> List[Sample]: if perturbation_number != "": test_type = "-".join( - str(perturbation) - if not isinstance(perturbation, dict) - else next(iter(perturbation)) + ( + str(perturbation) + if not isinstance(perturbation, dict) + else next(iter(perturbation)) + ) for perturbation in perturbations ) for sample in transformed_samples_perturbation: diff --git a/langtest/transform/security.py b/langtest/transform/security.py index 981ab61e8..a07431ce4 100644 --- a/langtest/transform/security.py +++ b/langtest/transform/security.py @@ -9,7 +9,6 @@ class SecurityTestFactory(ITests): - """Factory class for the security tests""" alias_name = "security" diff --git a/langtest/transform/sensitivity.py b/langtest/transform/sensitivity.py index 5ead376e1..9efbfbf2b 100644 --- a/langtest/transform/sensitivity.py +++ b/langtest/transform/sensitivity.py @@ -78,12 +78,14 @@ def transform(self) -> List[Sample]: test_func = self.supported_tests[test_name].transform _ = [ - sample.transform( - test_func, - params.get("parameters", {}), + ( + sample.transform( + test_func, + params.get("parameters", {}), + ) + if hasattr(sample, "transform") + else sample ) - if hasattr(sample, "transform") - else sample for sample in data_handler_copy ] transformed_samples = data_handler_copy diff --git a/langtest/transform/sycophancy.py b/langtest/transform/sycophancy.py index f35414986..3bcaf10eb 100644 --- a/langtest/transform/sycophancy.py +++ b/langtest/transform/sycophancy.py @@ -77,12 +77,14 @@ def transform(self) -> List[Sample]: test_func = self.supported_tests[test_name].transform _ = [ - sample.transform( - test_func, - params.get("parameters", {}), + ( + sample.transform( + test_func, + params.get("parameters", {}), + ) + if hasattr(sample, "transform") + else sample ) - if hasattr(sample, "transform") - else sample for sample in data_handler_copy ] transformed_samples = data_handler_copy diff --git a/langtest/types.py b/langtest/types.py index e08d14509..c0831b5e1 100644 --- a/langtest/types.py +++ b/langtest/types.py @@ -112,14 +112,26 @@ class RepresentationTestsConfig(TypedDict): min_gender_representation_count: representation.GenderRepresentation.TestConfig min_gender_representation_proportion: representation.GenderRepresentation.TestConfig - min_ethnicity_name_representation_count: representation.EthnicityRepresentation.TestConfig - min_ethnicity_name_representation_proportion: representation.EthnicityRepresentation.TestConfig + min_ethnicity_name_representation_count: ( + representation.EthnicityRepresentation.TestConfig + ) + min_ethnicity_name_representation_proportion: ( + representation.EthnicityRepresentation.TestConfig + ) min_label_representation_count: representation.LabelRepresentation.TestConfig min_label_representation_proportion: representation.LabelRepresentation.TestConfig - min_religion_name_representation_count: representation.ReligionRepresentation.TestConfig - min_religion_name_representation_proportion: representation.ReligionRepresentation.TestConfig - min_country_economic_representation_count: representation.CountryEconomicRepresentation.TestConfig - min_country_economic_representation_proportion: representation.CountryEconomicRepresentation.TestConfig + min_religion_name_representation_count: ( + representation.ReligionRepresentation.TestConfig + ) + min_religion_name_representation_proportion: ( + representation.ReligionRepresentation.TestConfig + ) + min_country_economic_representation_count: ( + representation.CountryEconomicRepresentation.TestConfig + ) + min_country_economic_representation_proportion: ( + representation.CountryEconomicRepresentation.TestConfig + ) class FairnessTestsConfig(TypedDict): diff --git a/langtest/utils/benchmark_utils.py b/langtest/utils/benchmark_utils.py index f3e08f839..19deb0a00 100644 --- a/langtest/utils/benchmark_utils.py +++ b/langtest/utils/benchmark_utils.py @@ -4,7 +4,6 @@ class Leaderboard(Generic[TypeVar("T", bound="Leaderboard")]): - """ Leaderboard class to manage the ranking of the models diff --git a/langtest/utils/custom_types/sample.py b/langtest/utils/custom_types/sample.py index 45c9ef233..808c77502 100644 --- a/langtest/utils/custom_types/sample.py +++ b/langtest/utils/custom_types/sample.py @@ -1127,7 +1127,6 @@ def run(self, model, **kwargs): class SecuritySample(BaseModel): - """ A class Representing a sample for security task. diff --git a/langtest/utils/number_to_word.py b/langtest/utils/number_to_word.py index c9fb0fae4..fdaffe48e 100644 --- a/langtest/utils/number_to_word.py +++ b/langtest/utils/number_to_word.py @@ -170,16 +170,16 @@ def group3sub(self, mo: Match) -> str: hunword = ( f" {number_args['one']}" if hundreds == 1 - else str(unit[hundreds]) - if hundreds - else f" {number_args['zero']}" + else str(unit[hundreds]) if hundreds else f" {number_args['zero']}" ) tenword = ( self.tenfn(tens, units) if tens - else f" {number_args['zero']} {unit[units]}" - if units - else f" {number_args['zero']} {number_args['zero']}" + else ( + f" {number_args['zero']} {unit[units]}" + if units + else f" {number_args['zero']} {number_args['zero']}" + ) ) return f"{hunword} {tenword}, " @@ -236,9 +236,7 @@ def number_to_words( sign = ( "plus" if nowhite.startswith("+") - else "minus" - if nowhite.startswith("-") - else "" + else "minus" if nowhite.startswith("-") else "" ) if num in nth_suff: @@ -314,11 +312,11 @@ def number_to_words( first = True if decimal is None else not num.endswith(decimal) num += "".join( [ - f" {nc}" - if not first - else f"{comma} {nc}" - if nc == decimal - else f" {nc}" + ( + f" {nc}" + if not first + else f"{comma} {nc}" if nc == decimal else f" {nc}" + ) for nc in numchunks ] ) diff --git a/langtest/utils/report_utils.py b/langtest/utils/report_utils.py index f586eb63b..fd9b403a4 100644 --- a/langtest/utils/report_utils.py +++ b/langtest/utils/report_utils.py @@ -228,9 +228,9 @@ def model_report( columns = list(set(columns)) columns = sorted( columns, - key=lambda x: ordered_columns.index(x) - if x in ordered_columns - else len(ordered_columns), + key=lambda x: ( + ordered_columns.index(x) if x in ordered_columns else len(ordered_columns) + ), ) # df_report = df_report.T.drop_duplicates().T diff --git a/tests/test_datasource.py b/tests/test_datasource.py index d83054f7e..e7820fb29 100644 --- a/tests/test_datasource.py +++ b/tests/test_datasource.py @@ -447,7 +447,6 @@ def test_export_data(self, dataset_config): class TestPandasDataset: - """Test cases for PandasDataset""" def test_load_data_pickle(self):