diff --git a/nextflow_schema.json b/nextflow_schema.json index 8eb59c7..7fafb16 100644 --- a/nextflow_schema.json +++ b/nextflow_schema.json @@ -640,10 +640,12 @@ "properties": { "segmentation_ids": { "type": "string", + "description": "Round id to be segmented", "default": "t1" }, "segmentation_subpath": { - "type": "string" + "type": "string", + "description": "Segmentation dataset", }, "seg_channels": { "type": "string", @@ -662,14 +664,17 @@ "default": "segmentation.n5" }, "skip_segmentation": { - "type": "boolean" + "type": "boolean", + "description": "If set skip segmentation" }, "distributed_cellpose": { "type": "boolean", + "description": "Use a distributed dask cluster to run segmentation", "default": true }, "cellpose_model": { "type": "string", + "description": "Cellpose model name", "default": "cyto3" }, "cellpose_models_dir": { @@ -677,6 +682,7 @@ }, "cellpose_log_config": { "type": "string", + "description": "Cellpose logging configuration", "default": "${projectDir}/conf/cellpose_logging_config.ini" }, "cellpose_dask_config": {