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<!doctype html>
<html>
<head>
{% include header.html %}
<meta charset="utf-8" />
<meta http-equiv="X-UA-Compatible" content="chrome=1" />
<title>JATS4R - JATS for Reuse</title>
<link rel="stylesheet" href="static/css/normalize.css" />
<link rel="stylesheet" href="static/css/style.css" />
<meta name="viewport" content="width=device-width, initial-scale=1" />
<script src='https://cdnjs.cloudflare.com/ajax/libs/jquery/2.1.4/jquery.min.js'></script>
<script src='https://cdnjs.cloudflare.com/ajax/libs/fetch/0.9.0/fetch.js'></script>
<script src='https://cdnjs.cloudflare.com/ajax/libs/js-yaml/3.4.1/js-yaml.js'></script>
<script src="static/js/script.js"></script>
</head>
<body>
<header>
<div class="wrap">
<a href="http://jats4r.org/"><img class="logo"
src="static/img/JATS4R.png" height="28px" alt="JATS4R"></a>
<h1><span class="e">JATS for Reuse</h1>
</div>
</header>
<div class="wrap content">
<aside>
<p class="intro"><em>Increase the reusability of the online literature by standardising the use of the Journal Article Tag Suite (JATS) for XML tagging</p>
<nav>
<ul>
<li><a href="#tag-recs">Tagging recommendations</a></li>
<li><a href="#samples-articles">Sample articles</a></li>
<li><a href="validator">Validator</a></li>
<li><a href="#news">News</a></li>
<li><a href="#getting-involved">Getting involved</a></li>
<li><a href="#participating">Organisations currently participating in
JATS4R</a></li>
<li><a href="#repositories">GitHub repositories</a></li>
</ul>
</nav>
</aside>
<section class="main-content" role="main">
<!-- If we ever need any alerts:
<p class="alert"></p>
-->
<p><strong>JATS for Reuse</strong> (<strong>JATS4R</strong>) was formed to provide guidelines and tools to standardise
the use of the <a href="http://www.niso.org/home/">NISO</a>
standard <a href="http://jats.nlm.nih.gov/archiving/tag-library/1.1d1/index.html">Journal and Archiving Tag Set</a>
(JATS) for tagging XML in publishing workflows. Although JATS is the most recent version of the National Library of
Medicine's tag set, many of these principles will also apply to previous versions that publishers may be using. Within
JATS, there are three sub sets with varying degrees of prescriptiveness - from most to least prescriptive, the Journal
Archiving and Interchange set, the Journal Publishing set and the Article Authoring set. The flexibility of the Journal
Archiving and Interchange set was intended to accommodate the requirements of different journals, allowing them to pick
and chose which elements and attributes to include. As a consequence, however, there has been considerable divergence
between publishers in the tagging of the individual components of different articles, preventing easy data mining and
impairing direct comparisons between articles in separate journals.</p>
<p>The JATS4R group was set by open access publishers and interested parties as a response to users attempting to reuse
content available under <a href="http://opendefinition.org/">open</a> <a href "http://creativecommons.org/">Creative Commons</a> licenses but being unable to programmatically
locate specific licensing information in published articles. We will define best practice tagging guidelines for
specific areas of interest (e.g. licenses, author contributions and display elements such as figures or equations) and
develop tools (e.g. schematrons) to help publishers easily identify whether their content is compliant with those best practices. By doing
this, we hope to promote the easy machine readability of content, thereby making research literature more accessible
for data miners and reducing the complexity of moving and exchanging content on a large scale. Although the initial
problem was raised with regards to the open access literature, it has wider scope and we would welcome contributions
and the adoption of our recommendations by all publishers and producers of XML based research publications.</p>
<p>We have already begun to draft recommendations for tagging, and you can see more examples as they
<a href="https://github.com/JATS4R/elements/wiki/Draft-recommendations">emerge</a>.</p>
<section id="tag-recs">
<h2>Tagging recommendations</h2>
<p>Currently, we have established recommendations in these areas:</p>
<ul>
<li><a href='recommendations/permissions.html'>permissions and
licenses</a>,</li>
<li><a href='recommendations/math.html'>math formulas</a>, and</li>
<li><a href='recommendations/data-citations.html'>data citations.</li>
</ul>
<p>See also this <a href='topics.html'>list of topics</a> for those areas related to
JATS tagging that we will address next.</p>
</section>
<section id="validation">
<h2>Validator</h2>
<p>An online validation tool is available <a href='validator/'>here</a>.</p>
</section>
<section id="samples-articles">
<h2>Sample articles</h2>
<p>Coming soon...</p>
</section>
<section id="news">
<h2>News</h2>
<p>We presented a paper at <a
href='http://jats.nlm.nih.gov/jats-con/2015/schedule2015.html'>JATS-Con 2015</a>.
You can read the full paper on NCBI Bookshelf, <a href="http://www.ncbi.nlm.nih.gov/books/NBK279901/">Improving the reusability of JATS</a>, and you can also
download <a href='http://jats4r.org/documents/jatscon-2015-slides.pptx'>the
slides</a>. The video recording of the presentation is available
<a href="http://videocast.nih.gov/Summary.asp?File=18960&bhcp=1&start=12703">here</a>.</p>
<p>The group held its <a
href="http://www.openaccessweek.org/profiles/blogs/jats-4-reuse-working-group-launch-first-public-event">first public event</a> - a webinar -
on October 22, 2014, as part of Open Access Week. A recording thereof is
<a href="https://www.youtube.com/watch?v=S3iwVlkvWdY">available on YouTube</a>.</p>
</section>
<section id="getting-involved">
<h2>Getting involved</h2>
<p>Your feedback is welcome. If you want to get involved, you can check out our
<a href="https://groups.google.com/forum/#!forum/jats4r">mailing list</a>, any of the
<a href='#repositories'>GitHub repositories</a> listed below, our current
<a href="https://github.com/JATS4R/elements/issues">open issues</a> or our documents on
<a href="https://drive.google.com/#folders/0B8n-nWqCI5WmdExlY1Zmd2N0QW8">Google
drive</a>.</p>
<p>The project is in the public domain, and all contributions to it will be released as
such. By submitting a pull request, you are agreeing to waive all rights to your
contribution under the terms of the
<a href='http://creativecommons.org/publicdomain/zero/1.0/'>CC0 Public Domain
Dedication</a>.</p>
<p>If you contribute the open source work of others, please mark it clearly in your pull
request.</p>
</section>
<section id="endorsements">
<h2>Organisations currently participating in JATS4R</h2>
<p>Below is a current list of organisations that currently endorse JATS4R. If you would like to be added to the list,
please contact <a class="emailLink" href="mailto:[email protected]">[email protected]</a>.</p>
<ul>
<li>Atypon</li>
<li>British Institute of Radiology</li>
<li>Cambridge University Press</li>
<li>Canadian Science Publishing</li>
<li>eLife</li>
<li>EMBL-EBI (Europe PMC)</li>
<li>F1000Research</li>
<li>Frontiers</li>
<li>HighWire Press</li>
<li>Nature</li>
<li>NCBI</li>
<li>Open Book Publishers</li>
<li>Oxford University Press</li>
<li>Peer J</li>
<li>Pensoft</li>
<li>Plazi</li>
<li>PLoS</li>
<li>River Valley Technologies</li>
</ul>
</section>
<section id="repositories">
<h2>GitHub repositories</h2>
<p>Our working repositories are on GitHub under the
<a href='https://github.com/JATS4R'>JATS4R organization</a>.</p>
<ul>
<li><a href="https://github.com/jats4r/JATS4R-Participant-Hub">JATS4R-Participant-Hub</a> -
The hub for all JATS4R meeting notes, examples, draft recommendations,
documents, and issues. Includes examples of XML markup from participating
publishers and draft recommendations.</li>
<li><a href="https://github.com/jats4r/website">website</a> -
This site's content, using the Jekyll static website system</li>
<li><a href="https://github.com/jats4r/validator">validator</a> -
Client-side validation tool, available <a href='http://jats4r.org/validator/'>here</a></li>
</ul>
</section>
</section>
<footer>
<p>This project is maintained by the<br />
<a href="https://github.com/jats4r">JATS4R organization</a>.</p>
<p><a href="https://twitter.com/JATS4R"
class="twitter-follow-button"
data-show-count="false">Follow @JATS4R</a>
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