Creation of a standard template to add a pipeline script

[elodiegermani]

Main purpose:
Creation of a standard template of the reproduced pipelines with NiPype based on already reproduced pipelines to facilitate contributions.

Steps:

• Creation of a template file in the src/lib directory
• Add prefilled functions (similar to those in the reproduced pipelines scripts) that could be used by new contributors
• Add sufficient information (comments) for contributors to understand what they have to replace/add
• Modify CONTRIBUTING.md with guidelines on how to use the template
• Test of the template by someone who knows NiPype

[elodiegermani]

@bclenet I used the FSL template (https://github.com/Inria-Empenn/narps_open_pipelines/blob/main/narps_open/pipelines/templates/template_fsl.py) to reproduce a pipeline. There is a mistake line 36: # [INFO] There was no run level analysis for the pipelines using FSL -> it's the opposite. In FSL, there is a run-level analysis and then a subject-level one where you merge all runs :)

[bclenet]

Thanks @elodiegermani, it looks like my theoretical knowledge of FSL pipelines is wrong 😅
Were you able to find other problems with that file or is it just that ? In other words : should I create a new issue for debugging the template ?