From 735d2f7a915e5418f0b4affbc1ecd5ca230d126b Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Boris=20Cl=C3=A9net?= Date: Fri, 20 Oct 2023 12:15:21 +0200 Subject: [PATCH] ANTs composite transform [skip ci] --- narps_open/pipelines/team_08MQ.py | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/narps_open/pipelines/team_08MQ.py b/narps_open/pipelines/team_08MQ.py index f246612c..f84fbb24 100644 --- a/narps_open/pipelines/team_08MQ.py +++ b/narps_open/pipelines/team_08MQ.py @@ -89,7 +89,6 @@ def get_preprocessing(self): normalization_anat.inputs.radius_or_number_of_bins = [32, 32, 4] normalization_anat.inputs.sampling_percentage = [0.25, 0.25, 1] normalization_anat.inputs.sampling_strategy = ['Regular', 'Regular', 'None'] - normalization_anat.inputs.transforms = ['Rigid', 'Affine', 'SyN'] normalization_anat.inputs.metric = ['MI', 'MI', 'CC'] normalization_anat.inputs.transform_parameters = [(0.1,), (0.1,), (0.1, 3.0, 0.0)] @@ -259,7 +258,7 @@ def get_preprocessing(self): (coregistration_sbref, alignment_func_to_anat, [('out_matrix_file', 'in_matrix_file')]), (brain_extraction_anat, alignment_func_to_anat, [('out_file', 'reference')]), (alignment_func_to_anat, alignment_func_to_mni, [('out_file', 'in_file')]), - (normalization_anat, alignment_func_to_mni, [('forward_transforms', 'field_file')]), + (normalization_anat, alignment_func_to_mni, [('composite_transform', 'field_file')]), (merge_masks, compute_confounds, [('out', 'mask_files')]), # Masks are in the func space (slice_time_correction, compute_confounds, [('slice_time_corrected_file', 'realigned_file')]),