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make process bug #220

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hzongyao opened this issue Nov 29, 2022 · 0 comments
Open

make process bug #220

hzongyao opened this issue Nov 29, 2022 · 0 comments

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@hzongyao
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$ make -j4 install
[ 0%] Updating buildtime config info
[ 0%] Building pyflow
[ 0%] Built target strelka_codemin
[ 0%] Built target strelka_rapidjson
*** Error compiling '/home/sm/sm/software/biosoft/bin/strelka2/strelka-2.9.10.release_src/build/redist/pyflow-1.1.20/src/pyflow.py'...
File "/home/sm/sm/software/biosoft/bin/strelka2/strelka-2.9.10.release_src/build/redist/pyflow-1.1.20/src/pyflow.py", line 791
dsfp = os.fdopen(os.open(taskDotScriptFile, os.O_WRONLY | os.O_CREAT, 0755), 'w')
^
SyntaxError: leading zeros in decimal integer literals are not permitted; use an 0o prefix for octal integers

make[2]: *** [redist/CMakeFiles/strelka_pyflow.dir/build.make:61: redist/pyflow-1.1.20/src/pyflow.pyc] Error 1
make[1]: *** [CMakeFiles/Makefile2:1471: redist/CMakeFiles/strelka_pyflow.dir/all] Error 2
make[1]: *** Waiting for unfinished jobs....
[ 0%] Building htslib library
[ 0%] Built target strelka_buildtime_config
[ 0%] Built target strelka_source_check
Failed to configure htslib, see /home/sm/sm/software/biosoft/bin/strelka2/strelka-2.9.10.release_src/build/redist/htslib-1.7-6-g6d2bfb7/htslib.config.error.log for details.
make[2]: *** [redist/CMakeFiles/strelka_samtools.dir/build.make:67: redist/htslib-1.7-6-g6d2bfb7/libhts.a] Error 1
make[1]: *** [CMakeFiles/Makefile2:1552: redist/CMakeFiles/strelka_samtools.dir/all] Error 2
make: *** [Makefile:141: all] Error 2

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