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a bug in auto_detect_tissue_type.R #68

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gnilihzeux opened this issue Sep 25, 2024 · 0 comments

gnilihzeux commented Sep 25, 2024

Dear author,

there is a bug in auto_detect_tissue_type.R, in which is list below

data_type <- if (scaled) "scale.data" else "counts"
obj <- if (package_type == "5") {
          as.matrix(seuratObject[[assay]][data_type])
        } else {
          as.matrix(seuratObject[[assay]]@data_type)
        }

A right is below

data_type <- if (scaled) "scale.data" else "counts"
obj <- if (package_type == "5") {
          as.matrix(seuratObject[[assay]][data_type])
        } else {
          as.matrix(slot(seuratObject[[assay]], data_type))
        }

The text was updated successfully, but these errors were encountered:

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