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duplicated clusters predicted by sc-type #66

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jasoncrucify opened this issue Jun 24, 2024 · 0 comments
Open

duplicated clusters predicted by sc-type #66

jasoncrucify opened this issue Jun 24, 2024 · 0 comments

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@jasoncrucify
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jasoncrucify commented Jun 24, 2024

Dear Developer,
I was using your packages happily until today, when I ran a new sample following the same workflow, it happened to me different cell type predictions are annotated in the same cluster with the same score and same ncells, I am wondering if this is due to my samples or it is a ground true reality. If there is a way to combine these different cell types in the cluster? as these annotations in the same cluster will hinder me for running the categorised graph using the sctype_scores data.

the error I have is:
Error in graph_from_data_frame(edges, vertices = nodes) :
Duplicate vertex names

and see attached the problem:

Capture d’écran 2024-06-24 à 23 44 16

thanks a lot

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