From e8f008f036bbe9f831d1f388b9f42a5c9be81d51 Mon Sep 17 00:00:00 2001 From: Chi Cheng Date: Thu, 30 Jan 2025 17:10:11 +0000 Subject: [PATCH] remove setrecursionlimit in unit tests. shouldn't be needed anymore now cython code has been removed --- MDANSE/Tests/UnitTests/Analysis/test_average_structure.py | 2 -- MDANSE/Tests/UnitTests/Analysis/test_dynamics.py | 2 -- MDANSE/Tests/UnitTests/Analysis/test_infrared.py | 3 --- MDANSE/Tests/UnitTests/Analysis/test_mcstas.py | 3 --- MDANSE/Tests/UnitTests/Analysis/test_mdmc_h5md.py | 2 -- MDANSE/Tests/UnitTests/Analysis/test_meansquare.py | 2 -- MDANSE/Tests/UnitTests/Analysis/test_mock_dynamics.py | 2 -- MDANSE/Tests/UnitTests/Analysis/test_molecule_names.py | 2 -- MDANSE/Tests/UnitTests/Analysis/test_qvectors.py | 2 -- MDANSE/Tests/UnitTests/Analysis/test_resolutions.py | 2 -- MDANSE/Tests/UnitTests/Analysis/test_scattering.py | 2 -- MDANSE/Tests/UnitTests/Analysis/test_structure.py | 2 -- MDANSE/Tests/UnitTests/Analysis/test_thermodynamics.py | 4 +--- MDANSE/Tests/UnitTests/Analysis/test_trajectory.py | 2 -- MDANSE/Tests/UnitTests/TrajectoryEditor/test_editor.py | 4 +--- MDANSE/Tests/UnitTests/test_text_output.py | 2 -- 16 files changed, 2 insertions(+), 36 deletions(-) diff --git a/MDANSE/Tests/UnitTests/Analysis/test_average_structure.py b/MDANSE/Tests/UnitTests/Analysis/test_average_structure.py index 02e5c9578..98ea02716 100644 --- a/MDANSE/Tests/UnitTests/Analysis/test_average_structure.py +++ b/MDANSE/Tests/UnitTests/Analysis/test_average_structure.py @@ -1,4 +1,3 @@ -import sys import tempfile import os from os import path @@ -8,7 +7,6 @@ from MDANSE.Framework.Jobs.IJob import IJob -sys.setrecursionlimit(100000) short_traj = os.path.join( os.path.dirname(os.path.realpath(__file__)), "..", diff --git a/MDANSE/Tests/UnitTests/Analysis/test_dynamics.py b/MDANSE/Tests/UnitTests/Analysis/test_dynamics.py index 032fcb245..2e2c7586b 100644 --- a/MDANSE/Tests/UnitTests/Analysis/test_dynamics.py +++ b/MDANSE/Tests/UnitTests/Analysis/test_dynamics.py @@ -1,4 +1,3 @@ -import sys import tempfile import os from os import path @@ -10,7 +9,6 @@ from MDANSE.Framework.Jobs.IJob import IJob -sys.setrecursionlimit(100000) short_traj = os.path.join( os.path.dirname(os.path.realpath(__file__)), "..", diff --git a/MDANSE/Tests/UnitTests/Analysis/test_infrared.py b/MDANSE/Tests/UnitTests/Analysis/test_infrared.py index a41d3d1d1..15d1797ca 100644 --- a/MDANSE/Tests/UnitTests/Analysis/test_infrared.py +++ b/MDANSE/Tests/UnitTests/Analysis/test_infrared.py @@ -1,4 +1,3 @@ -import sys import tempfile import os from os import path @@ -9,8 +8,6 @@ from MDANSE.Framework.Jobs.IJob import IJob -sys.setrecursionlimit(100000) - short_traj = os.path.join( os.path.dirname(os.path.realpath(__file__)), "..", diff --git a/MDANSE/Tests/UnitTests/Analysis/test_mcstas.py b/MDANSE/Tests/UnitTests/Analysis/test_mcstas.py index c38c17658..08e32c1e0 100644 --- a/MDANSE/Tests/UnitTests/Analysis/test_mcstas.py +++ b/MDANSE/Tests/UnitTests/Analysis/test_mcstas.py @@ -1,4 +1,3 @@ -import sys import tempfile import os from os import path @@ -7,8 +6,6 @@ from MDANSE.Framework.Jobs.IJob import IJob -sys.setrecursionlimit(100000) - short_traj = os.path.join( os.path.dirname(os.path.realpath(__file__)), "..", diff --git a/MDANSE/Tests/UnitTests/Analysis/test_mdmc_h5md.py b/MDANSE/Tests/UnitTests/Analysis/test_mdmc_h5md.py index 17d63e722..f17969d80 100644 --- a/MDANSE/Tests/UnitTests/Analysis/test_mdmc_h5md.py +++ b/MDANSE/Tests/UnitTests/Analysis/test_mdmc_h5md.py @@ -1,4 +1,3 @@ -import sys import tempfile import os import pytest @@ -9,7 +8,6 @@ from MDANSE.Framework.Jobs.IJob import IJob -sys.setrecursionlimit(100000) short_traj = os.path.join( os.path.dirname(os.path.realpath(__file__)), "..", diff --git a/MDANSE/Tests/UnitTests/Analysis/test_meansquare.py b/MDANSE/Tests/UnitTests/Analysis/test_meansquare.py index 3a03d4756..a672d04e2 100644 --- a/MDANSE/Tests/UnitTests/Analysis/test_meansquare.py +++ b/MDANSE/Tests/UnitTests/Analysis/test_meansquare.py @@ -1,4 +1,3 @@ -import sys import tempfile import os from os import path @@ -8,7 +7,6 @@ from MDANSE.Framework.Jobs.IJob import IJob -sys.setrecursionlimit(100000) short_traj = os.path.join( os.path.dirname(os.path.realpath(__file__)), "..", diff --git a/MDANSE/Tests/UnitTests/Analysis/test_mock_dynamics.py b/MDANSE/Tests/UnitTests/Analysis/test_mock_dynamics.py index 369bc0607..81b156988 100644 --- a/MDANSE/Tests/UnitTests/Analysis/test_mock_dynamics.py +++ b/MDANSE/Tests/UnitTests/Analysis/test_mock_dynamics.py @@ -1,4 +1,3 @@ -import sys import tempfile import os from os import path @@ -10,7 +9,6 @@ from MDANSE.Framework.Jobs.IJob import IJob -sys.setrecursionlimit(100000) file_wd = os.path.dirname(os.path.realpath(__file__)) mock_json = os.path.join(file_wd, "..", "Data", "mock.json") result_dir = os.path.join( diff --git a/MDANSE/Tests/UnitTests/Analysis/test_molecule_names.py b/MDANSE/Tests/UnitTests/Analysis/test_molecule_names.py index 09070ae3e..849f006d7 100644 --- a/MDANSE/Tests/UnitTests/Analysis/test_molecule_names.py +++ b/MDANSE/Tests/UnitTests/Analysis/test_molecule_names.py @@ -1,4 +1,3 @@ -import sys import tempfile import os from os import path @@ -10,7 +9,6 @@ from MDANSE.Framework.Jobs.IJob import IJob -sys.setrecursionlimit(100000) short_traj = os.path.join( os.path.dirname(os.path.realpath(__file__)), "..", diff --git a/MDANSE/Tests/UnitTests/Analysis/test_qvectors.py b/MDANSE/Tests/UnitTests/Analysis/test_qvectors.py index 5afb537cd..7c7f75117 100644 --- a/MDANSE/Tests/UnitTests/Analysis/test_qvectors.py +++ b/MDANSE/Tests/UnitTests/Analysis/test_qvectors.py @@ -1,4 +1,3 @@ -import sys import tempfile import os from os import path @@ -9,7 +8,6 @@ from MDANSE.Framework.Jobs.IJob import IJob -sys.setrecursionlimit(100000) short_traj = os.path.join( os.path.dirname(os.path.realpath(__file__)), "..", diff --git a/MDANSE/Tests/UnitTests/Analysis/test_resolutions.py b/MDANSE/Tests/UnitTests/Analysis/test_resolutions.py index d29b9148f..265a73626 100644 --- a/MDANSE/Tests/UnitTests/Analysis/test_resolutions.py +++ b/MDANSE/Tests/UnitTests/Analysis/test_resolutions.py @@ -1,4 +1,3 @@ -import sys import tempfile import os from os import path @@ -14,7 +13,6 @@ from MDANSE.Framework.Jobs.IJob import IJob -sys.setrecursionlimit(100000) short_traj = os.path.join( os.path.dirname(os.path.realpath(__file__)), "..", diff --git a/MDANSE/Tests/UnitTests/Analysis/test_scattering.py b/MDANSE/Tests/UnitTests/Analysis/test_scattering.py index 53198a197..40ab3fbdb 100644 --- a/MDANSE/Tests/UnitTests/Analysis/test_scattering.py +++ b/MDANSE/Tests/UnitTests/Analysis/test_scattering.py @@ -1,4 +1,3 @@ -import sys import tempfile import os from os import path @@ -10,7 +9,6 @@ from MDANSE.Framework.Jobs.IJob import IJob -sys.setrecursionlimit(100000) short_traj = os.path.join( os.path.dirname(os.path.realpath(__file__)), "..", diff --git a/MDANSE/Tests/UnitTests/Analysis/test_structure.py b/MDANSE/Tests/UnitTests/Analysis/test_structure.py index 2656acb37..109b80298 100644 --- a/MDANSE/Tests/UnitTests/Analysis/test_structure.py +++ b/MDANSE/Tests/UnitTests/Analysis/test_structure.py @@ -1,4 +1,3 @@ -import sys import tempfile import os from os import path @@ -10,7 +9,6 @@ from MDANSE.Framework.Jobs.IJob import IJob -sys.setrecursionlimit(100000) short_traj = os.path.join( os.path.dirname(os.path.realpath(__file__)), "..", diff --git a/MDANSE/Tests/UnitTests/Analysis/test_thermodynamics.py b/MDANSE/Tests/UnitTests/Analysis/test_thermodynamics.py index 1bf33b905..f6232b9f3 100644 --- a/MDANSE/Tests/UnitTests/Analysis/test_thermodynamics.py +++ b/MDANSE/Tests/UnitTests/Analysis/test_thermodynamics.py @@ -1,4 +1,3 @@ -import sys import tempfile import os from os import path @@ -6,11 +5,10 @@ import numpy as np import h5py -from MDANSE.Framework.InputData.HDFTrajectoryInputData import HDFTrajectoryInputData + from MDANSE.Framework.Jobs.IJob import IJob -sys.setrecursionlimit(100000) short_traj = os.path.join( os.path.dirname(os.path.realpath(__file__)), "..", diff --git a/MDANSE/Tests/UnitTests/Analysis/test_trajectory.py b/MDANSE/Tests/UnitTests/Analysis/test_trajectory.py index 10e0ac25e..ffa9f0349 100644 --- a/MDANSE/Tests/UnitTests/Analysis/test_trajectory.py +++ b/MDANSE/Tests/UnitTests/Analysis/test_trajectory.py @@ -1,4 +1,3 @@ -import sys import tempfile import os from os import path @@ -7,7 +6,6 @@ from MDANSE.Framework.Jobs.IJob import IJob -sys.setrecursionlimit(100000) short_traj = os.path.join( os.path.dirname(os.path.realpath(__file__)), "..", diff --git a/MDANSE/Tests/UnitTests/TrajectoryEditor/test_editor.py b/MDANSE/Tests/UnitTests/TrajectoryEditor/test_editor.py index 36a029303..b0f9095ad 100644 --- a/MDANSE/Tests/UnitTests/TrajectoryEditor/test_editor.py +++ b/MDANSE/Tests/UnitTests/TrajectoryEditor/test_editor.py @@ -1,17 +1,15 @@ -import sys import tempfile import os from os import path -import pytest import numpy as np import h5py + from MDANSE.MolecularDynamics.Configuration import remove_jumps from MDANSE.Framework.InputData.HDFTrajectoryInputData import HDFTrajectoryInputData from MDANSE.Framework.Jobs.IJob import IJob -sys.setrecursionlimit(100000) short_traj = os.path.join( os.path.dirname(os.path.realpath(__file__)), "..", diff --git a/MDANSE/Tests/UnitTests/test_text_output.py b/MDANSE/Tests/UnitTests/test_text_output.py index de1a25241..2da136698 100644 --- a/MDANSE/Tests/UnitTests/test_text_output.py +++ b/MDANSE/Tests/UnitTests/test_text_output.py @@ -1,4 +1,3 @@ -import sys import tempfile import os from os import path @@ -8,7 +7,6 @@ from MDANSE.Framework.Jobs.IJob import IJob -sys.setrecursionlimit(100000) short_traj = os.path.join( os.path.dirname(os.path.realpath(__file__)), "Converted",