From c02d53a4eb5eda0081e5dec801223adb9e52496a Mon Sep 17 00:00:00 2001
From: Maciej Bartkowiak <maciej.bartkowiak@stfc.ac.uk>
Date: Thu, 28 Mar 2024 10:28:58 +0000
Subject: [PATCH] Remove setup.py from Extensions

---
 MDANSE/Extensions/setup.py | 100 -------------------------------------
 1 file changed, 100 deletions(-)
 delete mode 100644 MDANSE/Extensions/setup.py

diff --git a/MDANSE/Extensions/setup.py b/MDANSE/Extensions/setup.py
deleted file mode 100644
index 95d3ef844b..0000000000
--- a/MDANSE/Extensions/setup.py
+++ /dev/null
@@ -1,100 +0,0 @@
-# **************************************************************************
-#
-# MDANSE: Molecular Dynamics Analysis for Neutron Scattering Experiments
-#
-# @file      Extensions/setup.py
-# @brief     Implements module/class/test setup
-#
-# @homepage https://www.isis.stfc.ac.uk/Pages/MDANSEproject.aspx
-# @license   GNU General Public License v3 or higher (see LICENSE)
-# @copyright Institut Laue Langevin 2013-now
-# @copyright ISIS Neutron and Muon Source, STFC, UKRI 2021-now
-# @authors   Scientific Computing Group at ILL (see AUTHORS)
-#
-# **************************************************************************
-
-import glob
-import os
-import sys
-
-from Cython.Distutils import build_ext
-
-from distutils.core import setup, Extension
-from distutils.sysconfig import get_config_vars
-
-import numpy
-
-if "linux" in sys.platform:
-    (opt,) = get_config_vars("OPT")
-    os.environ["OPT"] = " ".join(
-        flag for flag in opt.split() if flag != "-Wstrict-prototypes"
-    )
-
-INCLUDE_DIR = [numpy.get_include()]
-
-QHULL_DIR = os.path.join("qhull_lib")
-
-QHULL_INCLUDE_DIR = (
-    INCLUDE_DIR + [os.path.join(QHULL_DIR, "ext")] + [os.path.join(QHULL_DIR, "src")]
-)
-
-EXTENSIONS = [
-    Extension(
-        "atoms_in_shell", include_dirs=INCLUDE_DIR, sources=["atoms_in_shell.pyx"]
-    ),
-    Extension(
-        "atomic_trajectory", include_dirs=INCLUDE_DIR, sources=["atomic_trajectory.pyx"]
-    ),
-    Extension(
-        "fold_coordinates", include_dirs=INCLUDE_DIR, sources=["fold_coordinates.pyx"]
-    ),
-    Extension(
-        "com_trajectory", include_dirs=INCLUDE_DIR, sources=["com_trajectory.pyx"]
-    ),
-    Extension(
-        "contiguous_coordinates",
-        include_dirs=INCLUDE_DIR,
-        sources=["contiguous_coordinates.pyx"],
-    ),
-    Extension(
-        "distance_histogram",
-        include_dirs=INCLUDE_DIR,
-        sources=["distance_histogram.pyx"],
-    ),
-    Extension(
-        "fast_calculation", include_dirs=INCLUDE_DIR, sources=["fast_calculation.pyx"]
-    ),
-    Extension("sas_fast_calc", include_dirs=INCLUDE_DIR, sources=["sas_fast_calc.pyx"]),
-    Extension("mt_fast_calc", include_dirs=INCLUDE_DIR, sources=["mt_fast_calc.pyx"]),
-    Extension("sd_fast_calc", include_dirs=INCLUDE_DIR, sources=["sd_fast_calc.pyx"]),
-    Extension(
-        "mic_fast_calc",
-        include_dirs=INCLUDE_DIR,
-        sources=["mic_fast_calc.pyx"],
-        language="c++",
-    ),
-    Extension(
-        "qhull",
-        include_dirs=QHULL_INCLUDE_DIR,
-        sources=glob.glob(os.path.join(QHULL_DIR, "src", "*.c")) + ["qhull.pyx"],
-        define_macros=[("qh_QHpointer", "1")],
-    ),
-    Extension(
-        "mdanse_xtc",
-        include_dirs=[numpy.get_include(), "./xtc/include/", "./xtc/"],
-        sources=[
-            "./xtc/src/xdrfile.c",
-            "./xtc/src/xdr_seek.c",
-            "./xtc/src/xdrfile_xtc.c",
-            "./xtc/xtc.pyx",
-        ],
-    ),
-]
-
-
-setup(
-    name="MDANSE_Extensions",
-    version="1.0",
-    ext_modules=EXTENSIONS,
-    cmdclass={"build_ext": build_ext},
-)