forked from rileydavidr/twinblast
-
Notifications
You must be signed in to change notification settings - Fork 0
/
Copy pathREADME
42 lines (33 loc) · 982 Bytes
/
README
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
----------------------------------------
TwinBLAST - View 2 BLAST reports at once
----------------------------------------
TwinBLAST is a web-based tool for viewing 2 BLAST reports simultaneously
side-by-side. It uses ExtJS (www.sencha.com/products/extjs/) to provide 2
independently scrollable panels. BioPerl (www.bioperl.org) is used to index
raw BLAST reports and Bio::Graphics is used to draw pictograms of the BLAST
hits.
------------
Tutorial
------------
A walkthrough of how to set up an instance of TwinBLAST using a virtual machine
as well as how to set it up from scratch can be found here http://igs.github.io/twinblast/
------------
Requirements
------------
TwinBLAST uses HTML and Javascript and should work in all modern web browsers.
Installation of the TwinBLAST server requires the following packages:
Apache
ExtJS
MySQL
Perl Modules:
BioPerl
CGI
Tie::File
File::Basename
Digest::MD5
URI::Escape
JSON
POSIX
Bio::Graphics
Config::IniFiles
File::Slurp