USeq_9.2.5

See commit notes.

USeq_9.2.4

See the commit notes. Lots of improvements to VCFBkz, TNRunner, SimpleSomaticCaller. New apps such as BamPileup.

USeq_9.2.3

Complete reworking of the variant background PoN z-score strategy, use of an internal BamPileup tool. New classes for high depth low allele frequency somatic variant calling. See commit logs for full details.

USeq_9.2.2

See individual commits for additions.

USeq_9.2.1

New applications to convert Tempus clinical report json files to vcf and compare them to recalled vcfs.

USeq_9.2.0

Lots of enhancements related to TN workflow processing. See the commit logs.

USeq_9.1.9

See the commit logs.

USeq_9.1.8

See the commit logs!

USeq_9.1.7

Minor update to incorporate new filter criteria for vcf files.

USeq_9.1.6

See the commit notes.