build.properties.notused

version=9.2.6
src.dir=Source
classes.dir=Classes
orig.doc.dir=Documentation/USeqDocumentation
base.dir=Releases
library.jar=LibraryJars
release.name=USeq_${version}
release.base.dir=${base.dir}/${release.name}
release.build.dir=${release.base.dir}/build
release.master.jar.dir=${release.base.dir}/LibraryJars
release.worker.jar.dir=${release.base.dir}/Apps
release.doc.dir=${release.base.dir}/Documentation
class.select=trans,util,edu,meme
jar.select=edu/utah/seq/analysis/AggregatePlotter,\
# edu/utah/seq/analysis/ArupPipelineWrapper,\
# edu/utah/seq/parsers/BedStats,\
# edu/utah/seq/parsers/CollectBamStats,\
# edu/utah/diagnostics/CountChromosomes,\
# util/bio/seq/ConvertFasta2GCBarGraph,\
# edu/utah/seq/parsers/DbNSFPCoordinateConverter,\
# edu/utah/diagnostics/GenerateOverlapStats,\
# edu/utah/bass/InosinePredict,\
# edu/expr/KeggPathwayEnrichment,\
# edu/utah/diagnostics/MergeExonMetrics,\
# edu/utah/seq/vcf/MutectVCFParser,\
# util/bio/seq/OligoTiler,\
# edu/utah/diagnostics/ParseExonMetrics,\
# util/bio/wrappers/Primer3Wrapper,\
# edu/utah/seq/analysis/QCSeqs,\
# edu/utah/seq/data/ReadCoverage,\
# edu/utah/seq/amazon/S3UrlMaker,\
# edu/utah/seq/vcf/ScalpelVCFParser,\
# edu/utah/seq/parsers/Tag2Point,\
# edu/utah/pysano/TomatoFarmer,\
# edu/utah/seq/vcf/SomaticSniperVCFParser,\
# edu/utah/seq/run/TNRunner,\
edu/utah/seq/qc/AggregateQCStats,\