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IGV link function broken #6

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DavidAustinNix opened this issue Apr 6, 2017 · 0 comments
Open

IGV link function broken #6

DavidAustinNix opened this issue Apr 6, 2017 · 0 comments

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@DavidAustinNix
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When selecting results of a query and clicking the IGV link display button, an error is thrown on Osono. I suspect this is because the sessions soft link is broken in the /var/lib/tomcat/webapps directory. Should this point to /home/u0855942/biominer_data/files/IGV instead?

[u0028003@osono tomcat]$ cd /var/lib/tomcat/webapps
[u0028003@osono webapps]$ ls -la
total 53064
drwxrwxr-x 7 root tomcat 4096 Feb 8 11:09 .
drwxr-xr-x 3 root tomcat 4096 Mar 9 2015 ..
drwxr-xr-x 6 root root 4096 Dec 4 11:35 biominer
-rw-r--r-- 1 u0855942 domain^users 33640747 Dec 4 11:32 biominer.war
drwxr-xr-x 7 tomcat tomcat 4096 Apr 6 2015 examples
lrwxrwxrwx 1 root root 36 May 13 2016 jbrowse -> /home/u0855942/biominer_data/jbrowse
drwxr-xr-x 4 root root 4096 Feb 8 11:09 Query-0.2
-rwxrwxrwx 1 u0028003 domain^users 20662842 Feb 8 11:07 Query-0.2.war
drwxr-xr-x 3 tomcat tomcat 4096 Apr 6 2015 ROOT
drwxr-xr-x 5 tomcat tomcat 4096 Apr 6 2015 sample
lrwxrwxrwx 1 root root 26 Jul 22 2015 sessions -> /Data01/biominer/files/IGV
[u0028003@osono webapps]$ pwd
/var/lib/tomcat/webapps
[u0028003@osono webapps]$

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