From dd2d768718ff01a7b826922f9b834da5336238ad Mon Sep 17 00:00:00 2001 From: openMINDS Date: Wed, 21 Apr 2021 14:47:41 +0000 Subject: [PATCH] Automated vocabulary extraction --- SANDS | 2 +- vocab/properties.json | 1228 +++++++++++++++++++++-------------------- vocab/types.json | 37 ++ 3 files changed, 678 insertions(+), 589 deletions(-) diff --git a/SANDS b/SANDS index 7f6868a9ec..be95b2bee7 160000 --- a/SANDS +++ b/SANDS @@ -1 +1 @@ -Subproject commit 7f6868a9ec2ce58ffb1d6ebb6909304b7ca43f71 +Subproject commit be95b2bee743f1443167dc59ec3ffcc00a51b7db diff --git a/vocab/properties.json b/vocab/properties.json index 16fdfafa40..b92a96884b 100644 --- a/vocab/properties.json +++ b/vocab/properties.json @@ -4,15 +4,15 @@ "name": "IRI", "sameAs": null, "schemas": [ - "core/schemas/v3/data/file.schema.tpl.json", - "core/schemas/v3/data/fileRepository.schema.tpl.json" + "core/v3/data/file.schema.tpl.json", + "core/v3/data/fileRepository.schema.tpl.json" ] }, "URL": { "description": null, "name": "Url", "schemas": [ - "core/schemas/v3/miscellaneous/URL.schema.tpl.json" + "core/v3/miscellaneous/URL.schema.tpl.json" ] }, "abstractionLevel": { @@ -23,7 +23,7 @@ "name": "Abstraction level", "sameAs": null, "schemas": [ - "core/schemas/v3/products/model.schema.tpl.json" + "core/v3/products/model.schema.tpl.json" ] }, "accessibility": { @@ -33,10 +33,10 @@ ], "name": "Accessibility", "schemas": [ - "core/schemas/v3/products/datasetVersion.schema.tpl.json", - "core/schemas/v3/products/metaDataModelVersion.schema.tpl.json", - "core/schemas/v3/products/modelVersion.schema.tpl.json", - "core/schemas/v3/products/softwareVersion.schema.tpl.json" + "core/v3/products/datasetVersion.schema.tpl.json", + "core/v3/products/metaDataModelVersion.schema.tpl.json", + "core/v3/products/modelVersion.schema.tpl.json", + "core/v3/products/softwareVersion.schema.tpl.json" ] }, "acknowledgement": { @@ -44,7 +44,7 @@ "name": "Acknowledgement", "sameAs": null, "schemas": [ - "core/schemas/v3/miscellaneous/funding.schema.tpl.json" + "core/v3/miscellaneous/funding.schema.tpl.json" ] }, "addExistingTerminology": { @@ -54,26 +54,26 @@ ], "name": "Add existing terminology", "schemas": [ - "controlledTerms/schemas/v1/termSuggestion.schema.tpl.json" + "controlledTerms/v1/termSuggestion.schema.tpl.json" ] }, "additionalRemarks": { "description": "Mention of what deserves additional attention or notice.", "name": "Additional remarks", "schemas": [ - "core/schemas/v3/research/subjectGroup.schema.tpl.json", - "core/schemas/v3/research/subjectGroupState.schema.tpl.json", - "core/schemas/v3/research/subjectState.schema.tpl.json", - "core/schemas/v3/research/tissueSampleCollection.schema.tpl.json", - "core/schemas/v3/research/tissueSampleCollectionState.schema.tpl.json", - "core/schemas/v3/research/tissueSampleState.schema.tpl.json" + "core/v3/research/subjectGroup.schema.tpl.json", + "core/v3/research/subjectGroupState.schema.tpl.json", + "core/v3/research/subjectState.schema.tpl.json", + "core/v3/research/tissueSampleCollection.schema.tpl.json", + "core/v3/research/tissueSampleCollectionState.schema.tpl.json", + "core/v3/research/tissueSampleState.schema.tpl.json" ] }, "affiliation": { "description": "Declaration of a person being closely associated to an organization.", "name": "Affiliation", "schemas": [ - "core/schemas/v3/actors/person.schema.tpl.json" + "core/v3/actors/person.schema.tpl.json" ] }, "age": { @@ -81,10 +81,10 @@ "name": "Age", "sameAs": null, "schemas": [ - "core/schemas/v3/research/subjectGroupState.schema.tpl.json", - "core/schemas/v3/research/subjectState.schema.tpl.json", - "core/schemas/v3/research/tissueSampleCollectionState.schema.tpl.json", - "core/schemas/v3/research/tissueSampleState.schema.tpl.json" + "core/v3/research/subjectGroupState.schema.tpl.json", + "core/v3/research/subjectState.schema.tpl.json", + "core/v3/research/tissueSampleCollectionState.schema.tpl.json", + "core/v3/research/tissueSampleState.schema.tpl.json" ] }, "ageCategory": { @@ -95,8 +95,8 @@ "name": "Age category", "sameAs": null, "schemas": [ - "core/schemas/v3/research/subjectGroupState.schema.tpl.json", - "core/schemas/v3/research/subjectState.schema.tpl.json" + "core/v3/research/subjectGroupState.schema.tpl.json", + "core/v3/research/subjectState.schema.tpl.json" ] }, "algorithm": { @@ -104,7 +104,7 @@ "name": "Algorithm", "sameAs": null, "schemas": [ - "core/schemas/v3/data/hash.schema.tpl.json" + "core/v3/data/hash.schema.tpl.json" ] }, "anatomicalAxesOrientation": { @@ -115,29 +115,22 @@ "name": "Anatomical axes orientation", "sameAs": null, "schemas": [ - "SANDS/schemas/v1/coordinateSpace.schema.tpl.json" + "SANDS/v2/atlas/commonCoordinateSpace.schema.tpl.json", + "SANDS/v2/non-atlas/customCoordinateSpace.schema.tpl.json" ] }, "anatomicalEntity": { + "deprecated": true, "description": "Physical component of a body, organ, or tissue.", - "linkedTypes": [ - "https://openminds.ebrains.eu/sands/AnatomicalEntity" - ], "name": "Anatomical entity", - "schemas": [ - "SANDS/schemas/v1/parcellationTerminology.schema.tpl.json" - ] + "schemas": [] }, "annotationSet": { + "deprecated": true, "description": "Collection of notes or markings, each added by way of comment or explanation.", - "linkedTypes": [ - "https://openminds.ebrains.eu/sands/Annotation" - ], "name": "Annotation set", "sameAs": null, - "schemas": [ - "SANDS/schemas/v1/brainAtlasVersion.schema.tpl.json" - ] + "schemas": [] }, "applicationCategory": { "description": "Distinct class that groups software programs which perform a similar task or set of tasks.", @@ -147,7 +140,7 @@ "name": "Application category", "sameAs": null, "schemas": [ - "core/schemas/v3/products/softwareVersion.schema.tpl.json" + "core/v3/products/softwareVersion.schema.tpl.json" ] }, "author": { @@ -158,8 +151,8 @@ ], "name": "Author", "schemas": [ - "core/schemas/v3/products/dataset.schema.tpl.json", - "core/schemas/v3/products/datasetVersion.schema.tpl.json" + "core/v3/products/dataset.schema.tpl.json", + "core/v3/products/datasetVersion.schema.tpl.json" ] }, "awardNumber": { @@ -167,7 +160,7 @@ "name": "Award number", "sameAs": null, "schemas": [ - "core/schemas/v3/miscellaneous/funding.schema.tpl.json" + "core/v3/miscellaneous/funding.schema.tpl.json" ] }, "awardTitle": { @@ -175,14 +168,15 @@ "name": "Award title", "sameAs": null, "schemas": [ - "core/schemas/v3/miscellaneous/funding.schema.tpl.json" + "core/v3/miscellaneous/funding.schema.tpl.json" ] }, "axesOrigin": { "description": "Special point in a coordinate system used as a fixed point of reference for the geometry of the surrounding space.", "name": "Axes origin", "schemas": [ - "SANDS/schemas/v1/coordinateSpace.schema.tpl.json" + "SANDS/v2/atlas/commonCoordinateSpace.schema.tpl.json", + "SANDS/v2/non-atlas/customCoordinateSpace.schema.tpl.json" ] }, "behavioralTask": { @@ -192,7 +186,7 @@ ], "name": "Behavioral task", "schemas": [ - "core/schemas/v3/research/protocol.schema.tpl.json" + "core/v3/research/protocol.schema.tpl.json" ] }, "bestViewPoint": { @@ -200,7 +194,8 @@ "name": "Best view point", "sameAs": null, "schemas": [ - "SANDS/schemas/v1/annotation.schema.tpl.json" + "SANDS/v2/atlas/atlasAnnotation.schema.tpl.json", + "SANDS/v2/non-atlas/customAnnotation.schema.tpl.json" ] }, "biologicalSex": { @@ -211,10 +206,10 @@ "name": "Biological sex", "sameAs": null, "schemas": [ - "core/schemas/v3/research/subject.schema.tpl.json", - "core/schemas/v3/research/subjectGroup.schema.tpl.json", - "core/schemas/v3/research/tissueSample.schema.tpl.json", - "core/schemas/v3/research/tissueSampleCollection.schema.tpl.json" + "core/v3/research/subject.schema.tpl.json", + "core/v3/research/subjectGroup.schema.tpl.json", + "core/v3/research/tissueSample.schema.tpl.json", + "core/v3/research/tissueSampleCollection.schema.tpl.json" ] }, "contactInformation": { @@ -224,7 +219,7 @@ ], "name": "Contact information", "schemas": [ - "core/schemas/v3/actors/person.schema.tpl.json" + "core/v3/actors/person.schema.tpl.json" ] }, "content": { @@ -232,14 +227,14 @@ "name": "Content", "sameAs": null, "schemas": [ - "core/schemas/v3/data/file.schema.tpl.json" + "core/v3/data/file.schema.tpl.json" ] }, "context": { "description": null, "name": "Context", "schemas": [ - "core/schemas/v3/research/parameterSet.schema.tpl.json" + "core/v3/research/parameterSet.schema.tpl.json" ] }, "contributionType": { @@ -250,7 +245,7 @@ "name": "Contribution type", "sameAs": null, "schemas": [ - "core/schemas/v3/actors/contribution.schema.tpl.json" + "core/v3/actors/contribution.schema.tpl.json" ] }, "contributor": { @@ -262,27 +257,28 @@ "name": "Contributor", "sameAs": null, "schemas": [ - "core/schemas/v3/actors/contribution.schema.tpl.json" + "core/v3/actors/contribution.schema.tpl.json" ] }, "coordinatePoint": { "description": "Pair or triplet of numbers defining the position in a particular two- or three dimensional plane or space.", "name": "Coordinate point", "schemas": [ - "SANDS/schemas/v1/electrodeContact.schema.tpl.json" + "SANDS/v2/non-atlas/electrodeContact.schema.tpl.json" ] }, "coordinateSpace": { "description": "Two or three dimensional geometric setting.", "linkedTypes": [ - "https://openminds.ebrains.eu/sands/CoordinateSpace" + "https://openminds.ebrains.eu/sands/CommonCoordinateSpace", + "https://openminds.ebrains.eu/sands/CustomCoordinateSpace" ], "name": "Coordinate space", "sameAs": null, "schemas": [ - "SANDS/schemas/v1/brainAtlasVersion.schema.tpl.json", - "SANDS/schemas/v1/coordinatePoint.schema.tpl.json", - "SANDS/schemas/v1/image.schema.tpl.json" + "SANDS/v2/atlas/brainAtlasVersion.schema.tpl.json", + "SANDS/v2/miscellaneous/coordinatePoint.schema.tpl.json", + "SANDS/v2/non-atlas/customAnnotation.schema.tpl.json" ] }, "coordinates": { @@ -290,7 +286,7 @@ "name": "Coordinates", "sameAs": null, "schemas": [ - "SANDS/schemas/v1/coordinatePoint.schema.tpl.json" + "SANDS/v2/miscellaneous/coordinatePoint.schema.tpl.json" ] }, "coordinator": { @@ -301,7 +297,7 @@ ], "name": "Coordinator", "schemas": [ - "core/schemas/v3/products/project.schema.tpl.json" + "core/v3/products/project.schema.tpl.json" ] }, "copyright": { @@ -309,10 +305,10 @@ "name": "Copyright", "sameAs": null, "schemas": [ - "core/schemas/v3/products/datasetVersion.schema.tpl.json", - "core/schemas/v3/products/metaDataModelVersion.schema.tpl.json", - "core/schemas/v3/products/modelVersion.schema.tpl.json", - "core/schemas/v3/products/softwareVersion.schema.tpl.json" + "core/v3/products/datasetVersion.schema.tpl.json", + "core/v3/products/metaDataModelVersion.schema.tpl.json", + "core/v3/products/modelVersion.schema.tpl.json", + "core/v3/products/softwareVersion.schema.tpl.json" ] }, "criteria": { @@ -323,8 +319,10 @@ "name": "Criteria", "sameAs": null, "schemas": [ - "SANDS/schemas/v1/anatomicalEntityRelation.schema.tpl.json", - "SANDS/schemas/v1/annotation.schema.tpl.json" + "SANDS/v2/atlas/atlasAnnotation.schema.tpl.json", + "SANDS/v2/miscellaneous/qualitativeRelationAssessment.schema.tpl.json", + "SANDS/v2/miscellaneous/quantitativeRelationAssessment.schema.tpl.json", + "SANDS/v2/non-atlas/customAnnotation.schema.tpl.json" ] }, "criteriaQualityType": { @@ -335,8 +333,8 @@ "name": "Criteria quality type", "sameAs": null, "schemas": [ - "SANDS/schemas/v1/anatomicalEntityRelation.schema.tpl.json", - "SANDS/schemas/v1/annotation.schema.tpl.json" + "SANDS/v2/atlas/atlasAnnotation.schema.tpl.json", + "SANDS/v2/non-atlas/customAnnotation.schema.tpl.json" ] }, "custodian": { @@ -347,24 +345,25 @@ ], "name": "Custodian", "schemas": [ - "core/schemas/v3/products/dataset.schema.tpl.json", - "core/schemas/v3/products/datasetVersion.schema.tpl.json", - "core/schemas/v3/products/metaDataModel.schema.tpl.json", - "core/schemas/v3/products/metaDataModelVersion.schema.tpl.json", - "core/schemas/v3/products/model.schema.tpl.json", - "core/schemas/v3/products/modelVersion.schema.tpl.json", - "core/schemas/v3/products/software.schema.tpl.json", - "core/schemas/v3/products/softwareVersion.schema.tpl.json" + "core/v3/products/dataset.schema.tpl.json", + "core/v3/products/datasetVersion.schema.tpl.json", + "core/v3/products/metaDataModel.schema.tpl.json", + "core/v3/products/metaDataModelVersion.schema.tpl.json", + "core/v3/products/model.schema.tpl.json", + "core/v3/products/modelVersion.schema.tpl.json", + "core/v3/products/software.schema.tpl.json", + "core/v3/products/softwareVersion.schema.tpl.json" ] }, "defaultImage": { "description": "Two or three dimensional image that particluarly represents a specific coordinate space.", "linkedTypes": [ - "https://openminds.ebrains.eu/sands/Image" + "https://openminds.ebrains.eu/core/File" ], "name": "Default image", "schemas": [ - "SANDS/schemas/v1/coordinateSpace.schema.tpl.json" + "SANDS/v2/atlas/commonCoordinateSpace.schema.tpl.json", + "SANDS/v2/non-atlas/customCoordinateSpace.schema.tpl.json" ] }, "definedIn": { @@ -375,9 +374,8 @@ "name": "Defined in", "sameAs": null, "schemas": [ - "SANDS/schemas/v1/electrodeContact.schema.tpl.json", - "SANDS/schemas/v1/image.schema.tpl.json", - "SANDS/schemas/v1/parcellationTerminology.schema.tpl.json" + "SANDS/v2/atlas/parcellationTerminology.schema.tpl.json", + "SANDS/v2/non-atlas/electrodeContact.schema.tpl.json" ] }, "definition": { @@ -385,46 +383,46 @@ "name": "Definition", "sameAs": null, "schemas": [ - "controlledTerms/schemas/v1/UBERONParcellation.schema.tpl.json", - "controlledTerms/schemas/v1/ageCategory.schema.tpl.json", - "controlledTerms/schemas/v1/anatomicalAxesOrientation.schema.tpl.json", - "controlledTerms/schemas/v1/behavioralTask.schema.tpl.json", - "controlledTerms/schemas/v1/biologicalSex.schema.tpl.json", - "controlledTerms/schemas/v1/cellType.schema.tpl.json", - "controlledTerms/schemas/v1/contributionType.schema.tpl.json", - "controlledTerms/schemas/v1/criteriaQualityType.schema.tpl.json", - "controlledTerms/schemas/v1/disease.schema.tpl.json", - "controlledTerms/schemas/v1/diseaseModel.schema.tpl.json", - "controlledTerms/schemas/v1/ethicsAssessment.schema.tpl.json", - "controlledTerms/schemas/v1/experimentalApproach.schema.tpl.json", - "controlledTerms/schemas/v1/fileBundleGrouping.schema.tpl.json", - "controlledTerms/schemas/v1/fileRepositoryType.schema.tpl.json", - "controlledTerms/schemas/v1/fileUsageRole.schema.tpl.json", - "controlledTerms/schemas/v1/handedness.schema.tpl.json", - "controlledTerms/schemas/v1/language.schema.tpl.json", - "controlledTerms/schemas/v1/laterality.schema.tpl.json", - "controlledTerms/schemas/v1/metaDataModelType.schema.tpl.json", - "controlledTerms/schemas/v1/modelAbstractionLevel.schema.tpl.json", - "controlledTerms/schemas/v1/modelScope.schema.tpl.json", - "controlledTerms/schemas/v1/operatingDevice.schema.tpl.json", - "controlledTerms/schemas/v1/operatingSystem.schema.tpl.json", - "controlledTerms/schemas/v1/organ.schema.tpl.json", - "controlledTerms/schemas/v1/phenotype.schema.tpl.json", - "controlledTerms/schemas/v1/preparationType.schema.tpl.json", - "controlledTerms/schemas/v1/productAccessibility.schema.tpl.json", - "controlledTerms/schemas/v1/programmingLanguage.schema.tpl.json", - "controlledTerms/schemas/v1/qualitativeOverlap.schema.tpl.json", - "controlledTerms/schemas/v1/semanticDataType.schema.tpl.json", - "controlledTerms/schemas/v1/softwareApplicationCategory.schema.tpl.json", - "controlledTerms/schemas/v1/softwareFeature.schema.tpl.json", - "controlledTerms/schemas/v1/species.schema.tpl.json", - "controlledTerms/schemas/v1/strain.schema.tpl.json", - "controlledTerms/schemas/v1/technique.schema.tpl.json", - "controlledTerms/schemas/v1/termSuggestion.schema.tpl.json", - "controlledTerms/schemas/v1/terminology.schema.tpl.json", - "controlledTerms/schemas/v1/tissueSampleType.schema.tpl.json", - "controlledTerms/schemas/v1/typeOfUncertainty.schema.tpl.json", - "controlledTerms/schemas/v1/unitOfMeasurement.schema.tpl.json" + "controlledTerms/v1/UBERONParcellation.schema.tpl.json", + "controlledTerms/v1/ageCategory.schema.tpl.json", + "controlledTerms/v1/anatomicalAxesOrientation.schema.tpl.json", + "controlledTerms/v1/behavioralTask.schema.tpl.json", + "controlledTerms/v1/biologicalSex.schema.tpl.json", + "controlledTerms/v1/cellType.schema.tpl.json", + "controlledTerms/v1/contributionType.schema.tpl.json", + "controlledTerms/v1/criteriaQualityType.schema.tpl.json", + "controlledTerms/v1/disease.schema.tpl.json", + "controlledTerms/v1/diseaseModel.schema.tpl.json", + "controlledTerms/v1/ethicsAssessment.schema.tpl.json", + "controlledTerms/v1/experimentalApproach.schema.tpl.json", + "controlledTerms/v1/fileBundleGrouping.schema.tpl.json", + "controlledTerms/v1/fileRepositoryType.schema.tpl.json", + "controlledTerms/v1/fileUsageRole.schema.tpl.json", + "controlledTerms/v1/handedness.schema.tpl.json", + "controlledTerms/v1/language.schema.tpl.json", + "controlledTerms/v1/laterality.schema.tpl.json", + "controlledTerms/v1/metaDataModelType.schema.tpl.json", + "controlledTerms/v1/modelAbstractionLevel.schema.tpl.json", + "controlledTerms/v1/modelScope.schema.tpl.json", + "controlledTerms/v1/operatingDevice.schema.tpl.json", + "controlledTerms/v1/operatingSystem.schema.tpl.json", + "controlledTerms/v1/organ.schema.tpl.json", + "controlledTerms/v1/phenotype.schema.tpl.json", + "controlledTerms/v1/preparationType.schema.tpl.json", + "controlledTerms/v1/productAccessibility.schema.tpl.json", + "controlledTerms/v1/programmingLanguage.schema.tpl.json", + "controlledTerms/v1/qualitativeOverlap.schema.tpl.json", + "controlledTerms/v1/semanticDataType.schema.tpl.json", + "controlledTerms/v1/softwareApplicationCategory.schema.tpl.json", + "controlledTerms/v1/softwareFeature.schema.tpl.json", + "controlledTerms/v1/species.schema.tpl.json", + "controlledTerms/v1/strain.schema.tpl.json", + "controlledTerms/v1/technique.schema.tpl.json", + "controlledTerms/v1/termSuggestion.schema.tpl.json", + "controlledTerms/v1/terminology.schema.tpl.json", + "controlledTerms/v1/tissueSampleType.schema.tpl.json", + "controlledTerms/v1/typeOfUncertainty.schema.tpl.json", + "controlledTerms/v1/unitOfMeasurement.schema.tpl.json" ] }, "description": { @@ -432,59 +430,59 @@ "name": "Description", "sameAs": null, "schemas": [ - "SANDS/schemas/v1/brainAtlas.schema.tpl.json", - "controlledTerms/schemas/v1/UBERONParcellation.schema.tpl.json", - "controlledTerms/schemas/v1/ageCategory.schema.tpl.json", - "controlledTerms/schemas/v1/anatomicalAxesOrientation.schema.tpl.json", - "controlledTerms/schemas/v1/behavioralTask.schema.tpl.json", - "controlledTerms/schemas/v1/biologicalSex.schema.tpl.json", - "controlledTerms/schemas/v1/cellType.schema.tpl.json", - "controlledTerms/schemas/v1/contributionType.schema.tpl.json", - "controlledTerms/schemas/v1/criteriaQualityType.schema.tpl.json", - "controlledTerms/schemas/v1/disease.schema.tpl.json", - "controlledTerms/schemas/v1/diseaseModel.schema.tpl.json", - "controlledTerms/schemas/v1/ethicsAssessment.schema.tpl.json", - "controlledTerms/schemas/v1/experimentalApproach.schema.tpl.json", - "controlledTerms/schemas/v1/fileBundleGrouping.schema.tpl.json", - "controlledTerms/schemas/v1/fileRepositoryType.schema.tpl.json", - "controlledTerms/schemas/v1/fileUsageRole.schema.tpl.json", - "controlledTerms/schemas/v1/handedness.schema.tpl.json", - "controlledTerms/schemas/v1/language.schema.tpl.json", - "controlledTerms/schemas/v1/laterality.schema.tpl.json", - "controlledTerms/schemas/v1/metaDataModelType.schema.tpl.json", - "controlledTerms/schemas/v1/modelAbstractionLevel.schema.tpl.json", - "controlledTerms/schemas/v1/modelScope.schema.tpl.json", - "controlledTerms/schemas/v1/operatingDevice.schema.tpl.json", - "controlledTerms/schemas/v1/operatingSystem.schema.tpl.json", - "controlledTerms/schemas/v1/organ.schema.tpl.json", - "controlledTerms/schemas/v1/phenotype.schema.tpl.json", - "controlledTerms/schemas/v1/preparationType.schema.tpl.json", - "controlledTerms/schemas/v1/productAccessibility.schema.tpl.json", - "controlledTerms/schemas/v1/programmingLanguage.schema.tpl.json", - "controlledTerms/schemas/v1/qualitativeOverlap.schema.tpl.json", - "controlledTerms/schemas/v1/semanticDataType.schema.tpl.json", - "controlledTerms/schemas/v1/softwareApplicationCategory.schema.tpl.json", - "controlledTerms/schemas/v1/softwareFeature.schema.tpl.json", - "controlledTerms/schemas/v1/species.schema.tpl.json", - "controlledTerms/schemas/v1/strain.schema.tpl.json", - "controlledTerms/schemas/v1/technique.schema.tpl.json", - "controlledTerms/schemas/v1/termSuggestion.schema.tpl.json", - "controlledTerms/schemas/v1/terminology.schema.tpl.json", - "controlledTerms/schemas/v1/tissueSampleType.schema.tpl.json", - "controlledTerms/schemas/v1/typeOfUncertainty.schema.tpl.json", - "controlledTerms/schemas/v1/unitOfMeasurement.schema.tpl.json", - "core/schemas/v3/data/contentType.schema.tpl.json", - "core/schemas/v3/products/dataset.schema.tpl.json", - "core/schemas/v3/products/datasetVersion.schema.tpl.json", - "core/schemas/v3/products/metaDataModel.schema.tpl.json", - "core/schemas/v3/products/metaDataModelVersion.schema.tpl.json", - "core/schemas/v3/products/model.schema.tpl.json", - "core/schemas/v3/products/modelVersion.schema.tpl.json", - "core/schemas/v3/products/project.schema.tpl.json", - "core/schemas/v3/products/software.schema.tpl.json", - "core/schemas/v3/products/softwareVersion.schema.tpl.json", - "core/schemas/v3/research/protocol.schema.tpl.json", - "core/schemas/v3/research/protocolExecution.schema.tpl.json" + "SANDS/v2/atlas/brainAtlas.schema.tpl.json", + "controlledTerms/v1/UBERONParcellation.schema.tpl.json", + "controlledTerms/v1/ageCategory.schema.tpl.json", + "controlledTerms/v1/anatomicalAxesOrientation.schema.tpl.json", + "controlledTerms/v1/behavioralTask.schema.tpl.json", + "controlledTerms/v1/biologicalSex.schema.tpl.json", + "controlledTerms/v1/cellType.schema.tpl.json", + "controlledTerms/v1/contributionType.schema.tpl.json", + "controlledTerms/v1/criteriaQualityType.schema.tpl.json", + "controlledTerms/v1/disease.schema.tpl.json", + "controlledTerms/v1/diseaseModel.schema.tpl.json", + "controlledTerms/v1/ethicsAssessment.schema.tpl.json", + "controlledTerms/v1/experimentalApproach.schema.tpl.json", + "controlledTerms/v1/fileBundleGrouping.schema.tpl.json", + "controlledTerms/v1/fileRepositoryType.schema.tpl.json", + "controlledTerms/v1/fileUsageRole.schema.tpl.json", + "controlledTerms/v1/handedness.schema.tpl.json", + "controlledTerms/v1/language.schema.tpl.json", + "controlledTerms/v1/laterality.schema.tpl.json", + "controlledTerms/v1/metaDataModelType.schema.tpl.json", + "controlledTerms/v1/modelAbstractionLevel.schema.tpl.json", + "controlledTerms/v1/modelScope.schema.tpl.json", + "controlledTerms/v1/operatingDevice.schema.tpl.json", + "controlledTerms/v1/operatingSystem.schema.tpl.json", + "controlledTerms/v1/organ.schema.tpl.json", + "controlledTerms/v1/phenotype.schema.tpl.json", + "controlledTerms/v1/preparationType.schema.tpl.json", + "controlledTerms/v1/productAccessibility.schema.tpl.json", + "controlledTerms/v1/programmingLanguage.schema.tpl.json", + "controlledTerms/v1/qualitativeOverlap.schema.tpl.json", + "controlledTerms/v1/semanticDataType.schema.tpl.json", + "controlledTerms/v1/softwareApplicationCategory.schema.tpl.json", + "controlledTerms/v1/softwareFeature.schema.tpl.json", + "controlledTerms/v1/species.schema.tpl.json", + "controlledTerms/v1/strain.schema.tpl.json", + "controlledTerms/v1/technique.schema.tpl.json", + "controlledTerms/v1/termSuggestion.schema.tpl.json", + "controlledTerms/v1/terminology.schema.tpl.json", + "controlledTerms/v1/tissueSampleType.schema.tpl.json", + "controlledTerms/v1/typeOfUncertainty.schema.tpl.json", + "controlledTerms/v1/unitOfMeasurement.schema.tpl.json", + "core/v3/data/contentType.schema.tpl.json", + "core/v3/products/dataset.schema.tpl.json", + "core/v3/products/datasetVersion.schema.tpl.json", + "core/v3/products/metaDataModel.schema.tpl.json", + "core/v3/products/metaDataModelVersion.schema.tpl.json", + "core/v3/products/model.schema.tpl.json", + "core/v3/products/modelVersion.schema.tpl.json", + "core/v3/products/project.schema.tpl.json", + "core/v3/products/software.schema.tpl.json", + "core/v3/products/softwareVersion.schema.tpl.json", + "core/v3/research/protocol.schema.tpl.json", + "core/v3/research/protocolExecution.schema.tpl.json" ] }, "developer": { @@ -495,12 +493,12 @@ ], "name": "Developer", "schemas": [ - "core/schemas/v3/products/metaDataModel.schema.tpl.json", - "core/schemas/v3/products/metaDataModelVersion.schema.tpl.json", - "core/schemas/v3/products/model.schema.tpl.json", - "core/schemas/v3/products/modelVersion.schema.tpl.json", - "core/schemas/v3/products/software.schema.tpl.json", - "core/schemas/v3/products/softwareVersion.schema.tpl.json" + "core/v3/products/metaDataModel.schema.tpl.json", + "core/v3/products/metaDataModelVersion.schema.tpl.json", + "core/v3/products/model.schema.tpl.json", + "core/v3/products/modelVersion.schema.tpl.json", + "core/v3/products/software.schema.tpl.json", + "core/v3/products/softwareVersion.schema.tpl.json" ] }, "device": { @@ -511,7 +509,7 @@ "name": "Device", "sameAs": null, "schemas": [ - "core/schemas/v3/products/softwareVersion.schema.tpl.json" + "core/v3/products/softwareVersion.schema.tpl.json" ] }, "digest": { @@ -519,7 +517,7 @@ "name": "Digest", "sameAs": null, "schemas": [ - "core/schemas/v3/data/hash.schema.tpl.json" + "core/v3/data/hash.schema.tpl.json" ] }, "digitalIdentifier": { @@ -534,19 +532,19 @@ "name": "Digital identifier", "sameAs": null, "schemas": [ - "SANDS/schemas/v1/brainAtlas.schema.tpl.json", - "SANDS/schemas/v1/brainAtlasVersion.schema.tpl.json", - "SANDS/schemas/v1/coordinateSpace.schema.tpl.json", - "core/schemas/v3/actors/organization.schema.tpl.json", - "core/schemas/v3/actors/person.schema.tpl.json", - "core/schemas/v3/products/dataset.schema.tpl.json", - "core/schemas/v3/products/datasetVersion.schema.tpl.json", - "core/schemas/v3/products/metaDataModel.schema.tpl.json", - "core/schemas/v3/products/metaDataModelVersion.schema.tpl.json", - "core/schemas/v3/products/model.schema.tpl.json", - "core/schemas/v3/products/modelVersion.schema.tpl.json", - "core/schemas/v3/products/software.schema.tpl.json", - "core/schemas/v3/products/softwareVersion.schema.tpl.json" + "SANDS/v2/atlas/brainAtlas.schema.tpl.json", + "SANDS/v2/atlas/brainAtlasVersion.schema.tpl.json", + "SANDS/v2/atlas/commonCoordinateSpace.schema.tpl.json", + "core/v3/actors/organization.schema.tpl.json", + "core/v3/actors/person.schema.tpl.json", + "core/v3/products/dataset.schema.tpl.json", + "core/v3/products/datasetVersion.schema.tpl.json", + "core/v3/products/metaDataModel.schema.tpl.json", + "core/v3/products/metaDataModelVersion.schema.tpl.json", + "core/v3/products/model.schema.tpl.json", + "core/v3/products/modelVersion.schema.tpl.json", + "core/v3/products/software.schema.tpl.json", + "core/v3/products/softwareVersion.schema.tpl.json" ] }, "displayColor": { @@ -554,7 +552,8 @@ "name": "Display color", "sameAs": null, "schemas": [ - "SANDS/schemas/v1/annotation.schema.tpl.json" + "SANDS/v2/atlas/atlasAnnotation.schema.tpl.json", + "SANDS/v2/non-atlas/customAnnotation.schema.tpl.json" ] }, "electrodeContact": { @@ -564,7 +563,7 @@ ], "name": "Electrode contact", "schemas": [ - "SANDS/schemas/v1/electrode.schema.tpl.json" + "SANDS/v2/non-atlas/electrode.schema.tpl.json" ] }, "electrodes": { @@ -575,7 +574,7 @@ "name": "Electrodes", "sameAs": null, "schemas": [ - "SANDS/schemas/v1/electrodeArray.schema.tpl.json" + "SANDS/v2/non-atlas/electrodeArray.schema.tpl.json" ] }, "email": { @@ -583,14 +582,14 @@ "name": "Email", "sameAs": null, "schemas": [ - "core/schemas/v3/actors/contactInformation.schema.tpl.json" + "core/v3/actors/contactInformation.schema.tpl.json" ] }, "endDate": { "description": "Date in the Gregorian calendar at which something terminates in time.", "name": "End date", "schemas": [ - "core/schemas/v3/actors/affiliation.schema.tpl.json" + "core/v3/actors/affiliation.schema.tpl.json" ] }, "ethicsAssessment": { @@ -601,7 +600,7 @@ "name": "Ethics assessment", "sameAs": null, "schemas": [ - "core/schemas/v3/products/datasetVersion.schema.tpl.json" + "core/v3/products/datasetVersion.schema.tpl.json" ] }, "experimentalApproach": { @@ -611,7 +610,7 @@ ], "name": "Experimental approach", "schemas": [ - "core/schemas/v3/products/datasetVersion.schema.tpl.json" + "core/v3/products/datasetVersion.schema.tpl.json" ] }, "familyName": { @@ -619,7 +618,7 @@ "name": "Family name", "sameAs": null, "schemas": [ - "core/schemas/v3/actors/person.schema.tpl.json" + "core/v3/actors/person.schema.tpl.json" ] }, "feature": { @@ -629,14 +628,14 @@ ], "name": "Feature", "schemas": [ - "core/schemas/v3/products/softwareVersion.schema.tpl.json" + "core/v3/products/softwareVersion.schema.tpl.json" ] }, "fileExtension": { "description": "String of characters attached as suffix to the names of files of a particular format.", "name": "File extension", "schemas": [ - "core/schemas/v3/data/contentType.schema.tpl.json" + "core/v3/data/contentType.schema.tpl.json" ] }, "fileRepository": { @@ -646,7 +645,7 @@ ], "name": "File repository", "schemas": [ - "core/schemas/v3/data/file.schema.tpl.json" + "core/v3/data/file.schema.tpl.json" ] }, "format": { @@ -656,10 +655,10 @@ ], "name": "Format", "schemas": [ - "core/schemas/v3/data/file.schema.tpl.json", - "core/schemas/v3/data/fileBundle.schema.tpl.json", - "core/schemas/v3/data/fileRepository.schema.tpl.json", - "core/schemas/v3/products/modelVersion.schema.tpl.json" + "core/v3/data/file.schema.tpl.json", + "core/v3/data/fileBundle.schema.tpl.json", + "core/v3/data/fileRepository.schema.tpl.json", + "core/v3/products/modelVersion.schema.tpl.json" ] }, "fullDocumentation": { @@ -671,10 +670,10 @@ ], "name": "Full documentation", "schemas": [ - "core/schemas/v3/products/datasetVersion.schema.tpl.json", - "core/schemas/v3/products/metaDataModelVersion.schema.tpl.json", - "core/schemas/v3/products/modelVersion.schema.tpl.json", - "core/schemas/v3/products/softwareVersion.schema.tpl.json" + "core/v3/products/datasetVersion.schema.tpl.json", + "core/v3/products/metaDataModelVersion.schema.tpl.json", + "core/v3/products/modelVersion.schema.tpl.json", + "core/v3/products/softwareVersion.schema.tpl.json" ] }, "fullName": { @@ -682,21 +681,21 @@ "name": "Full name", "sameAs": null, "schemas": [ - "SANDS/schemas/v1/brainAtlas.schema.tpl.json", - "SANDS/schemas/v1/brainAtlasVersion.schema.tpl.json", - "SANDS/schemas/v1/coordinateSpace.schema.tpl.json", - "SANDS/schemas/v1/parcellationTerminology.schema.tpl.json", - "core/schemas/v3/actors/organization.schema.tpl.json", - "core/schemas/v3/data/license.schema.tpl.json", - "core/schemas/v3/products/dataset.schema.tpl.json", - "core/schemas/v3/products/datasetVersion.schema.tpl.json", - "core/schemas/v3/products/metaDataModel.schema.tpl.json", - "core/schemas/v3/products/metaDataModelVersion.schema.tpl.json", - "core/schemas/v3/products/model.schema.tpl.json", - "core/schemas/v3/products/modelVersion.schema.tpl.json", - "core/schemas/v3/products/project.schema.tpl.json", - "core/schemas/v3/products/software.schema.tpl.json", - "core/schemas/v3/products/softwareVersion.schema.tpl.json" + "SANDS/v2/atlas/brainAtlas.schema.tpl.json", + "SANDS/v2/atlas/brainAtlasVersion.schema.tpl.json", + "SANDS/v2/atlas/commonCoordinateSpace.schema.tpl.json", + "SANDS/v2/atlas/parcellationTerminology.schema.tpl.json", + "core/v3/actors/organization.schema.tpl.json", + "core/v3/data/license.schema.tpl.json", + "core/v3/products/dataset.schema.tpl.json", + "core/v3/products/datasetVersion.schema.tpl.json", + "core/v3/products/metaDataModel.schema.tpl.json", + "core/v3/products/metaDataModelVersion.schema.tpl.json", + "core/v3/products/model.schema.tpl.json", + "core/v3/products/modelVersion.schema.tpl.json", + "core/v3/products/project.schema.tpl.json", + "core/v3/products/software.schema.tpl.json", + "core/v3/products/softwareVersion.schema.tpl.json" ] }, "funder": { @@ -708,7 +707,7 @@ "name": "Funder", "sameAs": null, "schemas": [ - "core/schemas/v3/miscellaneous/funding.schema.tpl.json" + "core/v3/miscellaneous/funding.schema.tpl.json" ] }, "funding": { @@ -719,10 +718,10 @@ "name": "Funding", "sameAs": null, "schemas": [ - "core/schemas/v3/products/datasetVersion.schema.tpl.json", - "core/schemas/v3/products/metaDataModelVersion.schema.tpl.json", - "core/schemas/v3/products/modelVersion.schema.tpl.json", - "core/schemas/v3/products/softwareVersion.schema.tpl.json" + "core/v3/products/datasetVersion.schema.tpl.json", + "core/v3/products/metaDataModelVersion.schema.tpl.json", + "core/v3/products/modelVersion.schema.tpl.json", + "core/v3/products/softwareVersion.schema.tpl.json" ] }, "genotype": { @@ -737,7 +736,7 @@ "name": "Given name", "sameAs": null, "schemas": [ - "core/schemas/v3/actors/person.schema.tpl.json" + "core/v3/actors/person.schema.tpl.json" ] }, "groupedBy": { @@ -748,7 +747,7 @@ "name": "Grouped by", "sameAs": null, "schemas": [ - "core/schemas/v3/data/fileBundle.schema.tpl.json" + "core/v3/data/fileBundle.schema.tpl.json" ] }, "handedness": { @@ -758,8 +757,20 @@ ], "name": "Handedness", "schemas": [ - "core/schemas/v3/research/subjectGroupState.schema.tpl.json", - "core/schemas/v3/research/subjectState.schema.tpl.json" + "core/v3/research/subjectGroupState.schema.tpl.json", + "core/v3/research/subjectState.schema.tpl.json" + ] + }, + "hasAnnotation": { + "description": null, + "linkedTypes": [ + "https://openminds.ebrains.eu/sands/AtlasAnnotation", + "https://openminds.ebrains.eu/sands/CustomAnnotation" + ], + "name": "Has annotation", + "schemas": [ + "SANDS/v2/atlas/parcellationEntity.schema.tpl.json", + "SANDS/v2/non-atlas/customAnatomicalEntity.schema.tpl.json" ] }, "hasComponent": { @@ -769,19 +780,19 @@ ], "name": "Has component", "schemas": [ - "core/schemas/v3/products/softwareVersion.schema.tpl.json" + "core/v3/products/softwareVersion.schema.tpl.json" ] }, "hasParent": { "description": "Reference to a parent object or legal person.", "linkedTypes": [ "https://openminds.ebrains.eu/core/Organization", - "https://openminds.ebrains.eu/sands/AnatomicalEntity" + "https://openminds.ebrains.eu/sands/ParcellationEntity" ], "name": "Has parent", "schemas": [ - "SANDS/schemas/v1/anatomicalEntity.schema.tpl.json", - "core/schemas/v3/actors/organization.schema.tpl.json" + "SANDS/v2/atlas/parcellationEntity.schema.tpl.json", + "core/v3/actors/organization.schema.tpl.json" ] }, "hasResearchProducts": { @@ -799,7 +810,17 @@ "name": "Has research products", "sameAs": null, "schemas": [ - "core/schemas/v3/products/project.schema.tpl.json" + "core/v3/products/project.schema.tpl.json" + ] + }, + "hasTerminology": { + "description": null, + "linkedTypes": [ + "https://openminds.ebrains.eu/sands/parcellationTerminology" + ], + "name": "Has terminology", + "schemas": [ + "SANDS/v2/atlas/brainAtlasVersion.schema.tpl.json" ] }, "hasVersion": { @@ -813,11 +834,11 @@ ], "name": "Has version", "schemas": [ - "SANDS/schemas/v1/brainAtlas.schema.tpl.json", - "core/schemas/v3/products/dataset.schema.tpl.json", - "core/schemas/v3/products/metaDataModel.schema.tpl.json", - "core/schemas/v3/products/model.schema.tpl.json", - "core/schemas/v3/products/software.schema.tpl.json" + "SANDS/v2/atlas/brainAtlas.schema.tpl.json", + "core/v3/products/dataset.schema.tpl.json", + "core/v3/products/metaDataModel.schema.tpl.json", + "core/v3/products/model.schema.tpl.json", + "core/v3/products/software.schema.tpl.json" ] }, "hash": { @@ -825,9 +846,9 @@ "name": "Hash", "sameAs": null, "schemas": [ - "core/schemas/v3/data/file.schema.tpl.json", - "core/schemas/v3/data/fileBundle.schema.tpl.json", - "core/schemas/v3/data/fileRepository.schema.tpl.json" + "core/v3/data/file.schema.tpl.json", + "core/v3/data/fileBundle.schema.tpl.json", + "core/v3/data/fileRepository.schema.tpl.json" ] }, "holder": { @@ -839,7 +860,7 @@ "name": "Holder", "sameAs": null, "schemas": [ - "core/schemas/v3/data/copyright.schema.tpl.json" + "core/v3/data/copyright.schema.tpl.json" ] }, "homepage": { @@ -850,19 +871,19 @@ "name": "Homepage", "sameAs": null, "schemas": [ - "SANDS/schemas/v1/brainAtlas.schema.tpl.json", - "SANDS/schemas/v1/brainAtlasVersion.schema.tpl.json", - "SANDS/schemas/v1/coordinateSpace.schema.tpl.json", - "core/schemas/v3/actors/organization.schema.tpl.json", - "core/schemas/v3/products/dataset.schema.tpl.json", - "core/schemas/v3/products/datasetVersion.schema.tpl.json", - "core/schemas/v3/products/metaDataModel.schema.tpl.json", - "core/schemas/v3/products/metaDataModelVersion.schema.tpl.json", - "core/schemas/v3/products/model.schema.tpl.json", - "core/schemas/v3/products/modelVersion.schema.tpl.json", - "core/schemas/v3/products/project.schema.tpl.json", - "core/schemas/v3/products/software.schema.tpl.json", - "core/schemas/v3/products/softwareVersion.schema.tpl.json" + "SANDS/v2/atlas/brainAtlas.schema.tpl.json", + "SANDS/v2/atlas/brainAtlasVersion.schema.tpl.json", + "SANDS/v2/atlas/commonCoordinateSpace.schema.tpl.json", + "core/v3/actors/organization.schema.tpl.json", + "core/v3/products/dataset.schema.tpl.json", + "core/v3/products/datasetVersion.schema.tpl.json", + "core/v3/products/metaDataModel.schema.tpl.json", + "core/v3/products/metaDataModelVersion.schema.tpl.json", + "core/v3/products/model.schema.tpl.json", + "core/v3/products/modelVersion.schema.tpl.json", + "core/v3/products/project.schema.tpl.json", + "core/v3/products/software.schema.tpl.json", + "core/v3/products/softwareVersion.schema.tpl.json" ] }, "hostedBy": { @@ -873,7 +894,7 @@ "name": "Hosted by", "sameAs": null, "schemas": [ - "core/schemas/v3/data/fileRepository.schema.tpl.json" + "core/v3/data/fileRepository.schema.tpl.json" ] }, "howToCite": { @@ -881,17 +902,17 @@ "name": "How to cite", "sameAs": null, "schemas": [ - "SANDS/schemas/v1/brainAtlas.schema.tpl.json", - "SANDS/schemas/v1/brainAtlasVersion.schema.tpl.json", - "SANDS/schemas/v1/coordinateSpace.schema.tpl.json", - "core/schemas/v3/products/dataset.schema.tpl.json", - "core/schemas/v3/products/datasetVersion.schema.tpl.json", - "core/schemas/v3/products/metaDataModel.schema.tpl.json", - "core/schemas/v3/products/metaDataModelVersion.schema.tpl.json", - "core/schemas/v3/products/model.schema.tpl.json", - "core/schemas/v3/products/modelVersion.schema.tpl.json", - "core/schemas/v3/products/software.schema.tpl.json", - "core/schemas/v3/products/softwareVersion.schema.tpl.json" + "SANDS/v2/atlas/brainAtlas.schema.tpl.json", + "SANDS/v2/atlas/brainAtlasVersion.schema.tpl.json", + "SANDS/v2/atlas/commonCoordinateSpace.schema.tpl.json", + "core/v3/products/dataset.schema.tpl.json", + "core/v3/products/datasetVersion.schema.tpl.json", + "core/v3/products/metaDataModel.schema.tpl.json", + "core/v3/products/metaDataModelVersion.schema.tpl.json", + "core/v3/products/model.schema.tpl.json", + "core/v3/products/modelVersion.schema.tpl.json", + "core/v3/products/software.schema.tpl.json", + "core/v3/products/softwareVersion.schema.tpl.json" ] }, "identifier": { @@ -899,13 +920,13 @@ "name": "Identifier", "sameAs": null, "schemas": [ - "controlledTerms/schemas/v1/strain.schema.tpl.json", - "core/schemas/v3/miscellaneous/DOI.schema.tpl.json", - "core/schemas/v3/miscellaneous/GRIDID.schema.tpl.json", - "core/schemas/v3/miscellaneous/ISBN.schema.tpl.json", - "core/schemas/v3/miscellaneous/ORCID.schema.tpl.json", - "core/schemas/v3/miscellaneous/RORID.schema.tpl.json", - "core/schemas/v3/miscellaneous/SWHID.schema.tpl.json" + "controlledTerms/v1/strain.schema.tpl.json", + "core/v3/miscellaneous/DOI.schema.tpl.json", + "core/v3/miscellaneous/GRIDID.schema.tpl.json", + "core/v3/miscellaneous/ISBN.schema.tpl.json", + "core/v3/miscellaneous/ORCID.schema.tpl.json", + "core/v3/miscellaneous/RORID.schema.tpl.json", + "core/v3/miscellaneous/SWHID.schema.tpl.json" ] }, "identifierPattern": { @@ -925,12 +946,13 @@ "inRelationTo": { "description": "Reference to a related element.", "linkedTypes": [ - "https://openminds.ebrains.eu/sands/AnatomicalEntity" + "https://openminds.ebrains.eu/sands/ParcellationEntity" ], "name": "In relation to", "sameAs": null, "schemas": [ - "SANDS/schemas/v1/anatomicalEntityRelation.schema.tpl.json" + "SANDS/v2/miscellaneous/qualitativeRelationAssessment.schema.tpl.json", + "SANDS/v2/miscellaneous/quantitativeRelationAssessment.schema.tpl.json" ] }, "input": { @@ -945,7 +967,7 @@ ], "name": "Input", "schemas": [ - "core/schemas/v3/research/protocolExecution.schema.tpl.json" + "core/v3/research/protocolExecution.schema.tpl.json" ] }, "inputData": { @@ -957,8 +979,8 @@ ], "name": "Input data", "schemas": [ - "core/schemas/v3/products/datasetVersion.schema.tpl.json", - "core/schemas/v3/products/modelVersion.schema.tpl.json" + "core/v3/products/datasetVersion.schema.tpl.json", + "core/v3/products/modelVersion.schema.tpl.json" ] }, "inputFormat": { @@ -969,18 +991,19 @@ "name": "Input format", "sameAs": null, "schemas": [ - "core/schemas/v3/products/softwareVersion.schema.tpl.json" + "core/v3/products/softwareVersion.schema.tpl.json" ] }, "inspiredBy": { "description": "Reference to an inspiring element.", "linkedTypes": [ - "https://openminds.ebrains.eu/sands/Image" + "https://openminds.ebrains.eu/core/File" ], "name": "Inspired by", "sameAs": null, "schemas": [ - "SANDS/schemas/v1/annotation.schema.tpl.json" + "SANDS/v2/atlas/atlasAnnotation.schema.tpl.json", + "SANDS/v2/non-atlas/customAnnotation.schema.tpl.json" ] }, "internalIdentifier": { @@ -988,14 +1011,15 @@ "name": "Internal identifier", "sameAs": null, "schemas": [ - "SANDS/schemas/v1/annotation.schema.tpl.json", - "SANDS/schemas/v1/electrode.schema.tpl.json", - "SANDS/schemas/v1/electrodeArray.schema.tpl.json", - "SANDS/schemas/v1/electrodeContact.schema.tpl.json", - "core/schemas/v3/research/subject.schema.tpl.json", - "core/schemas/v3/research/subjectGroup.schema.tpl.json", - "core/schemas/v3/research/tissueSample.schema.tpl.json", - "core/schemas/v3/research/tissueSampleCollection.schema.tpl.json" + "SANDS/v2/atlas/atlasAnnotation.schema.tpl.json", + "SANDS/v2/non-atlas/customAnnotation.schema.tpl.json", + "SANDS/v2/non-atlas/electrode.schema.tpl.json", + "SANDS/v2/non-atlas/electrodeArray.schema.tpl.json", + "SANDS/v2/non-atlas/electrodeContact.schema.tpl.json", + "core/v3/research/subject.schema.tpl.json", + "core/v3/research/subjectGroup.schema.tpl.json", + "core/v3/research/tissueSample.schema.tpl.json", + "core/v3/research/tissueSampleCollection.schema.tpl.json" ] }, "isAlternativeVersionOf": { @@ -1009,11 +1033,12 @@ ], "name": "Is alternative version of", "schemas": [ - "SANDS/schemas/v1/brainAtlasVersion.schema.tpl.json", - "core/schemas/v3/products/datasetVersion.schema.tpl.json", - "core/schemas/v3/products/metaDataModelVersion.schema.tpl.json", - "core/schemas/v3/products/modelVersion.schema.tpl.json", - "core/schemas/v3/products/softwareVersion.schema.tpl.json" + "SANDS/v2/atlas/brainAtlasVersion.schema.tpl.json", + "SANDS/v2/atlas/parcellationTerminology.schema.tpl.json", + "core/v3/products/datasetVersion.schema.tpl.json", + "core/v3/products/metaDataModelVersion.schema.tpl.json", + "core/v3/products/modelVersion.schema.tpl.json", + "core/v3/products/softwareVersion.schema.tpl.json" ] }, "isNewVersionOf": { @@ -1028,11 +1053,12 @@ "name": "Is new version of", "sameAs": null, "schemas": [ - "SANDS/schemas/v1/brainAtlasVersion.schema.tpl.json", - "core/schemas/v3/products/datasetVersion.schema.tpl.json", - "core/schemas/v3/products/metaDataModelVersion.schema.tpl.json", - "core/schemas/v3/products/modelVersion.schema.tpl.json", - "core/schemas/v3/products/softwareVersion.schema.tpl.json" + "SANDS/v2/atlas/brainAtlasVersion.schema.tpl.json", + "SANDS/v2/atlas/parcellationTerminology.schema.tpl.json", + "core/v3/products/datasetVersion.schema.tpl.json", + "core/v3/products/metaDataModelVersion.schema.tpl.json", + "core/v3/products/modelVersion.schema.tpl.json", + "core/v3/products/softwareVersion.schema.tpl.json" ] }, "isPartOf": { @@ -1041,25 +1067,27 @@ "https://openminds.ebrains.eu/core/FileBundle", "https://openminds.ebrains.eu/core/FileRepository", "https://openminds.ebrains.eu/core/SubjectGroup", - "https://openminds.ebrains.eu/core/TissueSampleCollection" + "https://openminds.ebrains.eu/core/TissueSampleCollection", + "https://openminds.ebrains.eu/sands/ParcellationTerminology" ], "name": "Is part of", "sameAs": null, "schemas": [ - "core/schemas/v3/data/file.schema.tpl.json", - "core/schemas/v3/data/fileBundle.schema.tpl.json", - "core/schemas/v3/research/subject.schema.tpl.json", - "core/schemas/v3/research/tissueSample.schema.tpl.json" + "SANDS/v2/atlas/parcellationEntity.schema.tpl.json", + "core/v3/data/file.schema.tpl.json", + "core/v3/data/fileBundle.schema.tpl.json", + "core/v3/research/subject.schema.tpl.json", + "core/v3/research/tissueSample.schema.tpl.json" ] }, "keyword": { "description": "Significant word or concept that are representative of something or someone.", "name": "Keyword", "schemas": [ - "core/schemas/v3/products/datasetVersion.schema.tpl.json", - "core/schemas/v3/products/metaDataModelVersion.schema.tpl.json", - "core/schemas/v3/products/modelVersion.schema.tpl.json", - "core/schemas/v3/products/softwareVersion.schema.tpl.json" + "core/v3/products/datasetVersion.schema.tpl.json", + "core/v3/products/metaDataModelVersion.schema.tpl.json", + "core/v3/products/modelVersion.schema.tpl.json", + "core/v3/products/softwareVersion.schema.tpl.json" ] }, "language": { @@ -1070,7 +1098,7 @@ "name": "Language", "sameAs": null, "schemas": [ - "core/schemas/v3/products/softwareVersion.schema.tpl.json" + "core/v3/products/softwareVersion.schema.tpl.json" ] }, "laterality": { @@ -1081,9 +1109,10 @@ "name": "Laterality", "sameAs": null, "schemas": [ - "SANDS/schemas/v1/annotation.schema.tpl.json", - "core/schemas/v3/research/tissueSample.schema.tpl.json", - "core/schemas/v3/research/tissueSampleCollection.schema.tpl.json" + "SANDS/v2/atlas/atlasAnnotation.schema.tpl.json", + "SANDS/v2/non-atlas/customAnnotation.schema.tpl.json", + "core/v3/research/tissueSample.schema.tpl.json", + "core/v3/research/tissueSampleCollection.schema.tpl.json" ] }, "legalCode": { @@ -1091,7 +1120,7 @@ "name": "Legal code", "sameAs": null, "schemas": [ - "core/schemas/v3/data/license.schema.tpl.json" + "core/v3/data/license.schema.tpl.json" ] }, "license": { @@ -1102,25 +1131,30 @@ "name": "License", "sameAs": null, "schemas": [ - "core/schemas/v3/products/datasetVersion.schema.tpl.json", - "core/schemas/v3/products/metaDataModelVersion.schema.tpl.json", - "core/schemas/v3/products/modelVersion.schema.tpl.json", - "core/schemas/v3/products/softwareVersion.schema.tpl.json" + "core/v3/products/datasetVersion.schema.tpl.json", + "core/v3/products/metaDataModelVersion.schema.tpl.json", + "core/v3/products/modelVersion.schema.tpl.json", + "core/v3/products/softwareVersion.schema.tpl.json" ] }, "lookupLabel": { "description": null, "name": "Lookup label", "schemas": [ - "core/schemas/v3/research/protocolExecution.schema.tpl.json", - "core/schemas/v3/research/subject.schema.tpl.json", - "core/schemas/v3/research/subjectGroup.schema.tpl.json", - "core/schemas/v3/research/subjectGroupState.schema.tpl.json", - "core/schemas/v3/research/subjectState.schema.tpl.json", - "core/schemas/v3/research/tissueSample.schema.tpl.json", - "core/schemas/v3/research/tissueSampleCollection.schema.tpl.json", - "core/schemas/v3/research/tissueSampleCollectionState.schema.tpl.json", - "core/schemas/v3/research/tissueSampleState.schema.tpl.json" + "SANDS/v2/atlas/atlasAnnotation.schema.tpl.json", + "SANDS/v2/non-atlas/customAnnotation.schema.tpl.json", + "SANDS/v2/non-atlas/electrode.schema.tpl.json", + "SANDS/v2/non-atlas/electrodeArray.schema.tpl.json", + "SANDS/v2/non-atlas/electrodeContact.schema.tpl.json", + "core/v3/research/protocolExecution.schema.tpl.json", + "core/v3/research/subject.schema.tpl.json", + "core/v3/research/subjectGroup.schema.tpl.json", + "core/v3/research/subjectGroupState.schema.tpl.json", + "core/v3/research/subjectState.schema.tpl.json", + "core/v3/research/tissueSample.schema.tpl.json", + "core/v3/research/tissueSampleCollection.schema.tpl.json", + "core/v3/research/tissueSampleCollectionState.schema.tpl.json", + "core/v3/research/tissueSampleState.schema.tpl.json" ] }, "maxValue": { @@ -1128,7 +1162,7 @@ "name": "Max value", "sameAs": null, "schemas": [ - "core/schemas/v3/miscellaneous/quantitativeValueRange.schema.tpl.json" + "core/v3/miscellaneous/quantitativeValueRange.schema.tpl.json" ] }, "minValue": { @@ -1136,7 +1170,7 @@ "name": "Min value", "sameAs": null, "schemas": [ - "core/schemas/v3/miscellaneous/quantitativeValueRange.schema.tpl.json" + "core/v3/miscellaneous/quantitativeValueRange.schema.tpl.json" ] }, "modality": { @@ -1151,66 +1185,66 @@ "name": "Name", "sameAs": null, "schemas": [ - "SANDS/schemas/v1/anatomicalEntity.schema.tpl.json", - "controlledTerms/schemas/v1/UBERONParcellation.schema.tpl.json", - "controlledTerms/schemas/v1/ageCategory.schema.tpl.json", - "controlledTerms/schemas/v1/anatomicalAxesOrientation.schema.tpl.json", - "controlledTerms/schemas/v1/behavioralTask.schema.tpl.json", - "controlledTerms/schemas/v1/biologicalSex.schema.tpl.json", - "controlledTerms/schemas/v1/cellType.schema.tpl.json", - "controlledTerms/schemas/v1/contributionType.schema.tpl.json", - "controlledTerms/schemas/v1/criteriaQualityType.schema.tpl.json", - "controlledTerms/schemas/v1/disease.schema.tpl.json", - "controlledTerms/schemas/v1/diseaseModel.schema.tpl.json", - "controlledTerms/schemas/v1/ethicsAssessment.schema.tpl.json", - "controlledTerms/schemas/v1/experimentalApproach.schema.tpl.json", - "controlledTerms/schemas/v1/fileBundleGrouping.schema.tpl.json", - "controlledTerms/schemas/v1/fileRepositoryType.schema.tpl.json", - "controlledTerms/schemas/v1/fileUsageRole.schema.tpl.json", - "controlledTerms/schemas/v1/handedness.schema.tpl.json", - "controlledTerms/schemas/v1/language.schema.tpl.json", - "controlledTerms/schemas/v1/laterality.schema.tpl.json", - "controlledTerms/schemas/v1/metaDataModelType.schema.tpl.json", - "controlledTerms/schemas/v1/modelAbstractionLevel.schema.tpl.json", - "controlledTerms/schemas/v1/modelScope.schema.tpl.json", - "controlledTerms/schemas/v1/operatingDevice.schema.tpl.json", - "controlledTerms/schemas/v1/operatingSystem.schema.tpl.json", - "controlledTerms/schemas/v1/organ.schema.tpl.json", - "controlledTerms/schemas/v1/phenotype.schema.tpl.json", - "controlledTerms/schemas/v1/preparationType.schema.tpl.json", - "controlledTerms/schemas/v1/productAccessibility.schema.tpl.json", - "controlledTerms/schemas/v1/programmingLanguage.schema.tpl.json", - "controlledTerms/schemas/v1/qualitativeOverlap.schema.tpl.json", - "controlledTerms/schemas/v1/semanticDataType.schema.tpl.json", - "controlledTerms/schemas/v1/softwareApplicationCategory.schema.tpl.json", - "controlledTerms/schemas/v1/softwareFeature.schema.tpl.json", - "controlledTerms/schemas/v1/species.schema.tpl.json", - "controlledTerms/schemas/v1/strain.schema.tpl.json", - "controlledTerms/schemas/v1/technique.schema.tpl.json", - "controlledTerms/schemas/v1/termSuggestion.schema.tpl.json", - "controlledTerms/schemas/v1/terminology.schema.tpl.json", - "controlledTerms/schemas/v1/tissueSampleType.schema.tpl.json", - "controlledTerms/schemas/v1/typeOfUncertainty.schema.tpl.json", - "controlledTerms/schemas/v1/unitOfMeasurement.schema.tpl.json", - "core/schemas/v3/data/contentType.schema.tpl.json", - "core/schemas/v3/data/file.schema.tpl.json", - "core/schemas/v3/data/fileBundle.schema.tpl.json", - "core/schemas/v3/data/fileRepository.schema.tpl.json", - "core/schemas/v3/research/numericalParameter.schema.tpl.json", - "core/schemas/v3/research/protocol.schema.tpl.json", - "core/schemas/v3/research/stringParameter.schema.tpl.json" + "SANDS/v2/atlas/atlasAnnotation.schema.tpl.json", + "SANDS/v2/atlas/parcellationEntity.schema.tpl.json", + "SANDS/v2/non-atlas/customAnatomicalEntity.schema.tpl.json", + "SANDS/v2/non-atlas/customAnnotation.schema.tpl.json", + "SANDS/v2/non-atlas/customCoordinateSpace.schema.tpl.json", + "controlledTerms/v1/UBERONParcellation.schema.tpl.json", + "controlledTerms/v1/ageCategory.schema.tpl.json", + "controlledTerms/v1/anatomicalAxesOrientation.schema.tpl.json", + "controlledTerms/v1/behavioralTask.schema.tpl.json", + "controlledTerms/v1/biologicalSex.schema.tpl.json", + "controlledTerms/v1/cellType.schema.tpl.json", + "controlledTerms/v1/contributionType.schema.tpl.json", + "controlledTerms/v1/criteriaQualityType.schema.tpl.json", + "controlledTerms/v1/disease.schema.tpl.json", + "controlledTerms/v1/diseaseModel.schema.tpl.json", + "controlledTerms/v1/ethicsAssessment.schema.tpl.json", + "controlledTerms/v1/experimentalApproach.schema.tpl.json", + "controlledTerms/v1/fileBundleGrouping.schema.tpl.json", + "controlledTerms/v1/fileRepositoryType.schema.tpl.json", + "controlledTerms/v1/fileUsageRole.schema.tpl.json", + "controlledTerms/v1/handedness.schema.tpl.json", + "controlledTerms/v1/language.schema.tpl.json", + "controlledTerms/v1/laterality.schema.tpl.json", + "controlledTerms/v1/metaDataModelType.schema.tpl.json", + "controlledTerms/v1/modelAbstractionLevel.schema.tpl.json", + "controlledTerms/v1/modelScope.schema.tpl.json", + "controlledTerms/v1/operatingDevice.schema.tpl.json", + "controlledTerms/v1/operatingSystem.schema.tpl.json", + "controlledTerms/v1/organ.schema.tpl.json", + "controlledTerms/v1/phenotype.schema.tpl.json", + "controlledTerms/v1/preparationType.schema.tpl.json", + "controlledTerms/v1/productAccessibility.schema.tpl.json", + "controlledTerms/v1/programmingLanguage.schema.tpl.json", + "controlledTerms/v1/qualitativeOverlap.schema.tpl.json", + "controlledTerms/v1/semanticDataType.schema.tpl.json", + "controlledTerms/v1/softwareApplicationCategory.schema.tpl.json", + "controlledTerms/v1/softwareFeature.schema.tpl.json", + "controlledTerms/v1/species.schema.tpl.json", + "controlledTerms/v1/strain.schema.tpl.json", + "controlledTerms/v1/technique.schema.tpl.json", + "controlledTerms/v1/termSuggestion.schema.tpl.json", + "controlledTerms/v1/terminology.schema.tpl.json", + "controlledTerms/v1/tissueSampleType.schema.tpl.json", + "controlledTerms/v1/typeOfUncertainty.schema.tpl.json", + "controlledTerms/v1/unitOfMeasurement.schema.tpl.json", + "core/v3/data/contentType.schema.tpl.json", + "core/v3/data/file.schema.tpl.json", + "core/v3/data/fileBundle.schema.tpl.json", + "core/v3/data/fileRepository.schema.tpl.json", + "core/v3/research/numericalParameter.schema.tpl.json", + "core/v3/research/protocol.schema.tpl.json", + "core/v3/research/stringParameter.schema.tpl.json" ] }, "namingTerm": { + "deprecated": true, "description": "Word or expression that has a precise meaning within a science, art, profession, or subject.", - "linkedTypes": [ - "https://openminds.ebrains.eu/sands/AnatomicalEntity" - ], "name": "Naming term", "sameAs": null, - "schemas": [ - "SANDS/schemas/v1/annotation.schema.tpl.json" - ] + "schemas": [] }, "nativeUnit": { "description": "Determinate quantity used in the original measurement.", @@ -1220,7 +1254,8 @@ "name": "Native unit", "sameAs": null, "schemas": [ - "SANDS/schemas/v1/coordinateSpace.schema.tpl.json" + "SANDS/v2/atlas/commonCoordinateSpace.schema.tpl.json", + "SANDS/v2/non-atlas/customCoordinateSpace.schema.tpl.json" ] }, "ontologyIdentifier": { @@ -1228,50 +1263,50 @@ "name": "Ontology identifier", "sameAs": null, "schemas": [ - "SANDS/schemas/v1/anatomicalEntity.schema.tpl.json", - "SANDS/schemas/v1/brainAtlasVersion.schema.tpl.json", - "SANDS/schemas/v1/coordinateSpace.schema.tpl.json", - "SANDS/schemas/v1/parcellationTerminology.schema.tpl.json", - "controlledTerms/schemas/v1/UBERONParcellation.schema.tpl.json", - "controlledTerms/schemas/v1/ageCategory.schema.tpl.json", - "controlledTerms/schemas/v1/anatomicalAxesOrientation.schema.tpl.json", - "controlledTerms/schemas/v1/behavioralTask.schema.tpl.json", - "controlledTerms/schemas/v1/biologicalSex.schema.tpl.json", - "controlledTerms/schemas/v1/cellType.schema.tpl.json", - "controlledTerms/schemas/v1/contributionType.schema.tpl.json", - "controlledTerms/schemas/v1/criteriaQualityType.schema.tpl.json", - "controlledTerms/schemas/v1/disease.schema.tpl.json", - "controlledTerms/schemas/v1/diseaseModel.schema.tpl.json", - "controlledTerms/schemas/v1/ethicsAssessment.schema.tpl.json", - "controlledTerms/schemas/v1/experimentalApproach.schema.tpl.json", - "controlledTerms/schemas/v1/fileBundleGrouping.schema.tpl.json", - "controlledTerms/schemas/v1/fileRepositoryType.schema.tpl.json", - "controlledTerms/schemas/v1/fileUsageRole.schema.tpl.json", - "controlledTerms/schemas/v1/handedness.schema.tpl.json", - "controlledTerms/schemas/v1/language.schema.tpl.json", - "controlledTerms/schemas/v1/laterality.schema.tpl.json", - "controlledTerms/schemas/v1/metaDataModelType.schema.tpl.json", - "controlledTerms/schemas/v1/modelAbstractionLevel.schema.tpl.json", - "controlledTerms/schemas/v1/modelScope.schema.tpl.json", - "controlledTerms/schemas/v1/operatingDevice.schema.tpl.json", - "controlledTerms/schemas/v1/operatingSystem.schema.tpl.json", - "controlledTerms/schemas/v1/organ.schema.tpl.json", - "controlledTerms/schemas/v1/phenotype.schema.tpl.json", - "controlledTerms/schemas/v1/preparationType.schema.tpl.json", - "controlledTerms/schemas/v1/productAccessibility.schema.tpl.json", - "controlledTerms/schemas/v1/programmingLanguage.schema.tpl.json", - "controlledTerms/schemas/v1/qualitativeOverlap.schema.tpl.json", - "controlledTerms/schemas/v1/semanticDataType.schema.tpl.json", - "controlledTerms/schemas/v1/softwareApplicationCategory.schema.tpl.json", - "controlledTerms/schemas/v1/softwareFeature.schema.tpl.json", - "controlledTerms/schemas/v1/species.schema.tpl.json", - "controlledTerms/schemas/v1/strain.schema.tpl.json", - "controlledTerms/schemas/v1/technique.schema.tpl.json", - "controlledTerms/schemas/v1/termSuggestion.schema.tpl.json", - "controlledTerms/schemas/v1/terminology.schema.tpl.json", - "controlledTerms/schemas/v1/tissueSampleType.schema.tpl.json", - "controlledTerms/schemas/v1/typeOfUncertainty.schema.tpl.json", - "controlledTerms/schemas/v1/unitOfMeasurement.schema.tpl.json" + "SANDS/v2/atlas/brainAtlasVersion.schema.tpl.json", + "SANDS/v2/atlas/commonCoordinateSpace.schema.tpl.json", + "SANDS/v2/atlas/parcellationEntity.schema.tpl.json", + "SANDS/v2/atlas/parcellationTerminology.schema.tpl.json", + "controlledTerms/v1/UBERONParcellation.schema.tpl.json", + "controlledTerms/v1/ageCategory.schema.tpl.json", + "controlledTerms/v1/anatomicalAxesOrientation.schema.tpl.json", + "controlledTerms/v1/behavioralTask.schema.tpl.json", + "controlledTerms/v1/biologicalSex.schema.tpl.json", + "controlledTerms/v1/cellType.schema.tpl.json", + "controlledTerms/v1/contributionType.schema.tpl.json", + "controlledTerms/v1/criteriaQualityType.schema.tpl.json", + "controlledTerms/v1/disease.schema.tpl.json", + "controlledTerms/v1/diseaseModel.schema.tpl.json", + "controlledTerms/v1/ethicsAssessment.schema.tpl.json", + "controlledTerms/v1/experimentalApproach.schema.tpl.json", + "controlledTerms/v1/fileBundleGrouping.schema.tpl.json", + "controlledTerms/v1/fileRepositoryType.schema.tpl.json", + "controlledTerms/v1/fileUsageRole.schema.tpl.json", + "controlledTerms/v1/handedness.schema.tpl.json", + "controlledTerms/v1/language.schema.tpl.json", + "controlledTerms/v1/laterality.schema.tpl.json", + "controlledTerms/v1/metaDataModelType.schema.tpl.json", + "controlledTerms/v1/modelAbstractionLevel.schema.tpl.json", + "controlledTerms/v1/modelScope.schema.tpl.json", + "controlledTerms/v1/operatingDevice.schema.tpl.json", + "controlledTerms/v1/operatingSystem.schema.tpl.json", + "controlledTerms/v1/organ.schema.tpl.json", + "controlledTerms/v1/phenotype.schema.tpl.json", + "controlledTerms/v1/preparationType.schema.tpl.json", + "controlledTerms/v1/productAccessibility.schema.tpl.json", + "controlledTerms/v1/programmingLanguage.schema.tpl.json", + "controlledTerms/v1/qualitativeOverlap.schema.tpl.json", + "controlledTerms/v1/semanticDataType.schema.tpl.json", + "controlledTerms/v1/softwareApplicationCategory.schema.tpl.json", + "controlledTerms/v1/softwareFeature.schema.tpl.json", + "controlledTerms/v1/species.schema.tpl.json", + "controlledTerms/v1/strain.schema.tpl.json", + "controlledTerms/v1/technique.schema.tpl.json", + "controlledTerms/v1/termSuggestion.schema.tpl.json", + "controlledTerms/v1/terminology.schema.tpl.json", + "controlledTerms/v1/tissueSampleType.schema.tpl.json", + "controlledTerms/v1/typeOfUncertainty.schema.tpl.json", + "controlledTerms/v1/unitOfMeasurement.schema.tpl.json" ] }, "operatingSystem": { @@ -1282,7 +1317,7 @@ "name": "Operating system", "sameAs": null, "schemas": [ - "core/schemas/v3/products/softwareVersion.schema.tpl.json" + "core/v3/products/softwareVersion.schema.tpl.json" ] }, "organization": { @@ -1292,7 +1327,7 @@ ], "name": "Organization", "schemas": [ - "core/schemas/v3/actors/affiliation.schema.tpl.json" + "core/v3/actors/affiliation.schema.tpl.json" ] }, "origin": { @@ -1304,25 +1339,24 @@ "name": "Origin", "sameAs": null, "schemas": [ - "core/schemas/v3/research/tissueSample.schema.tpl.json", - "core/schemas/v3/research/tissueSampleCollection.schema.tpl.json" + "core/v3/research/tissueSample.schema.tpl.json", + "core/v3/research/tissueSampleCollection.schema.tpl.json" ] }, "otherAnatomicalRelation": { + "deprecated": true, "description": "Reference to a related anatomical structure.", "name": "Other anatomical relation", - "schemas": [ - "SANDS/schemas/v1/anatomicalEntity.schema.tpl.json" - ] + "schemas": [] }, "otherContribution": { "description": "Giving or supplying of something (such as money or time) as a part or share other than what is covered elsewhere.", "name": "Other contribution", "schemas": [ - "core/schemas/v3/products/datasetVersion.schema.tpl.json", - "core/schemas/v3/products/metaDataModelVersion.schema.tpl.json", - "core/schemas/v3/products/modelVersion.schema.tpl.json", - "core/schemas/v3/products/softwareVersion.schema.tpl.json" + "core/v3/products/datasetVersion.schema.tpl.json", + "core/v3/products/metaDataModelVersion.schema.tpl.json", + "core/v3/products/modelVersion.schema.tpl.json", + "core/v3/products/softwareVersion.schema.tpl.json" ] }, "output": { @@ -1337,7 +1371,7 @@ ], "name": "Output", "schemas": [ - "core/schemas/v3/research/protocolExecution.schema.tpl.json" + "core/v3/research/protocolExecution.schema.tpl.json" ] }, "outputData": { @@ -1349,7 +1383,7 @@ ], "name": "Output data", "schemas": [ - "core/schemas/v3/products/modelVersion.schema.tpl.json" + "core/v3/products/modelVersion.schema.tpl.json" ] }, "outputFormat": { @@ -1360,21 +1394,21 @@ "name": "Output format", "sameAs": null, "schemas": [ - "core/schemas/v3/products/softwareVersion.schema.tpl.json" + "core/v3/products/softwareVersion.schema.tpl.json" ] }, "parameter": { "description": "Digital or physical property determining a particular function, characteristic or behavior of something.", "name": "Parameter", "schemas": [ - "core/schemas/v3/research/parameterSet.schema.tpl.json" + "core/v3/research/parameterSet.schema.tpl.json" ] }, "parameterSet": { "description": "Manner, position, or direction in which digital or physical properties are set to determine a particular function, characteristics or behavior of something.", "name": "Parameter set", "schemas": [ - "core/schemas/v3/research/protocolExecution.schema.tpl.json" + "core/v3/research/protocolExecution.schema.tpl.json" ] }, "pathology": { @@ -1386,17 +1420,17 @@ "name": "Pathology", "sameAs": null, "schemas": [ - "core/schemas/v3/research/subjectGroupState.schema.tpl.json", - "core/schemas/v3/research/subjectState.schema.tpl.json", - "core/schemas/v3/research/tissueSampleCollectionState.schema.tpl.json", - "core/schemas/v3/research/tissueSampleState.schema.tpl.json" + "core/v3/research/subjectGroupState.schema.tpl.json", + "core/v3/research/subjectState.schema.tpl.json", + "core/v3/research/tissueSampleCollectionState.schema.tpl.json", + "core/v3/research/tissueSampleState.schema.tpl.json" ] }, "patternOfFilenames": { "description": "Reliable sample / structure of characters valid for all names in a particular collection of files.", "name": "Pattern of filenames", "schemas": [ - "core/schemas/v3/data/fileBundle.schema.tpl.json" + "core/v3/data/fileBundle.schema.tpl.json" ] }, "phenotype": { @@ -1407,10 +1441,10 @@ "name": "Phenotype", "sameAs": null, "schemas": [ - "core/schemas/v3/research/subject.schema.tpl.json", - "core/schemas/v3/research/subjectGroup.schema.tpl.json", - "core/schemas/v3/research/tissueSample.schema.tpl.json", - "core/schemas/v3/research/tissueSampleCollection.schema.tpl.json" + "core/v3/research/subject.schema.tpl.json", + "core/v3/research/subjectGroup.schema.tpl.json", + "core/v3/research/tissueSample.schema.tpl.json", + "core/v3/research/tissueSampleCollection.schema.tpl.json" ] }, "preparationType": { @@ -1420,7 +1454,7 @@ ], "name": "Preparation type", "schemas": [ - "core/schemas/v3/research/protocolExecution.schema.tpl.json" + "core/v3/research/protocolExecution.schema.tpl.json" ] }, "programmingLanguage": { @@ -1431,7 +1465,7 @@ "name": "Programming language", "sameAs": null, "schemas": [ - "core/schemas/v3/products/softwareVersion.schema.tpl.json" + "core/v3/products/softwareVersion.schema.tpl.json" ] }, "protocol": { @@ -1442,8 +1476,8 @@ "name": "Protocol", "sameAs": null, "schemas": [ - "core/schemas/v3/products/datasetVersion.schema.tpl.json", - "core/schemas/v3/research/protocolExecution.schema.tpl.json" + "core/v3/products/datasetVersion.schema.tpl.json", + "core/v3/research/protocolExecution.schema.tpl.json" ] }, "qualitativeOverlap": { @@ -1453,14 +1487,14 @@ ], "name": "Qualitative overlap", "schemas": [ - "SANDS/schemas/v1/anatomicalEntityRelation.schema.tpl.json" + "SANDS/v2/miscellaneous/qualitativeRelationAssessment.schema.tpl.json" ] }, "quantitativeOverlap": { "description": "Numerical characterization of how much two things occupy the same space.", "name": "Quantitative overlap", "schemas": [ - "SANDS/schemas/v1/anatomicalEntityRelation.schema.tpl.json" + "SANDS/v2/miscellaneous/quantitativeRelationAssessment.schema.tpl.json" ] }, "quantity": { @@ -1468,8 +1502,8 @@ "name": "Quantity", "sameAs": null, "schemas": [ - "core/schemas/v3/research/subjectGroup.schema.tpl.json", - "core/schemas/v3/research/tissueSampleCollection.schema.tpl.json" + "core/v3/research/subjectGroup.schema.tpl.json", + "core/v3/research/tissueSampleCollection.schema.tpl.json" ] }, "relatedAtlasTerm": { @@ -1483,18 +1517,14 @@ "description": "Reference to an official two-part identifier for file formats and format contents.", "name": "Related media type", "schemas": [ - "core/schemas/v3/data/contentType.schema.tpl.json" + "core/v3/data/contentType.schema.tpl.json" ] }, "relatedParcellationTerm": { + "deprecated": true, "description": null, - "linkedTypes": [ - "https://openminds.ebrains.eu/sands/AnatomicalEntity" - ], "name": "Related parcellation term", - "schemas": [ - "SANDS/schemas/v1/annotation.schema.tpl.json" - ] + "schemas": [] }, "relatedPublication": { "description": "Reference to something that was made available for the general public to see or buy.", @@ -1504,10 +1534,10 @@ ], "name": "Related publication", "schemas": [ - "core/schemas/v3/products/datasetVersion.schema.tpl.json", - "core/schemas/v3/products/metaDataModelVersion.schema.tpl.json", - "core/schemas/v3/products/modelVersion.schema.tpl.json", - "core/schemas/v3/products/softwareVersion.schema.tpl.json" + "core/v3/products/datasetVersion.schema.tpl.json", + "core/v3/products/metaDataModelVersion.schema.tpl.json", + "core/v3/products/modelVersion.schema.tpl.json", + "core/v3/products/softwareVersion.schema.tpl.json" ] }, "relatedRecording": { @@ -1518,7 +1548,7 @@ ], "name": "Related recording", "schemas": [ - "SANDS/schemas/v1/electrodeContact.schema.tpl.json" + "SANDS/v2/non-atlas/electrodeContact.schema.tpl.json" ] }, "relatedStimulation": { @@ -1529,7 +1559,25 @@ ], "name": "Related stimulation", "schemas": [ - "SANDS/schemas/v1/electrodeContact.schema.tpl.json" + "SANDS/v2/non-atlas/electrodeContact.schema.tpl.json" + ] + }, + "relatedUBERONTerm": { + "description": null, + "linkedTypes": [ + "https://openminds.ebrains.eu/controlledTerms/UBERONParcellation" + ], + "name": "Related uberonterm", + "schemas": [ + "SANDS/v2/atlas/parcellationEntity.schema.tpl.json" + ] + }, + "relationAssessment": { + "description": null, + "name": "Relation assessment", + "schemas": [ + "SANDS/v2/atlas/parcellationEntity.schema.tpl.json", + "SANDS/v2/non-atlas/customAnatomicalEntity.schema.tpl.json" ] }, "releaseDate": { @@ -1537,12 +1585,12 @@ "name": "Release date", "sameAs": null, "schemas": [ - "SANDS/schemas/v1/brainAtlasVersion.schema.tpl.json", - "SANDS/schemas/v1/coordinateSpace.schema.tpl.json", - "core/schemas/v3/products/datasetVersion.schema.tpl.json", - "core/schemas/v3/products/metaDataModelVersion.schema.tpl.json", - "core/schemas/v3/products/modelVersion.schema.tpl.json", - "core/schemas/v3/products/softwareVersion.schema.tpl.json" + "SANDS/v2/atlas/brainAtlasVersion.schema.tpl.json", + "SANDS/v2/atlas/commonCoordinateSpace.schema.tpl.json", + "core/v3/products/datasetVersion.schema.tpl.json", + "core/v3/products/metaDataModelVersion.schema.tpl.json", + "core/v3/products/modelVersion.schema.tpl.json", + "core/v3/products/softwareVersion.schema.tpl.json" ] }, "relevantFor": { @@ -1553,7 +1601,7 @@ ], "name": "Relevant for", "schemas": [ - "core/schemas/v3/research/parameterSet.schema.tpl.json" + "core/v3/research/parameterSet.schema.tpl.json" ] }, "repository": { @@ -1564,10 +1612,10 @@ "name": "Repository", "sameAs": null, "schemas": [ - "core/schemas/v3/products/datasetVersion.schema.tpl.json", - "core/schemas/v3/products/metaDataModelVersion.schema.tpl.json", - "core/schemas/v3/products/modelVersion.schema.tpl.json", - "core/schemas/v3/products/softwareVersion.schema.tpl.json" + "core/v3/products/datasetVersion.schema.tpl.json", + "core/v3/products/metaDataModelVersion.schema.tpl.json", + "core/v3/products/modelVersion.schema.tpl.json", + "core/v3/products/softwareVersion.schema.tpl.json" ] }, "repositoryType": { @@ -1577,14 +1625,14 @@ ], "name": "Repository type", "schemas": [ - "core/schemas/v3/data/fileRepository.schema.tpl.json" + "core/v3/data/fileRepository.schema.tpl.json" ] }, "requirement": { "description": "Something essential to the existence, occurrence or function of something else.", "name": "Requirement", "schemas": [ - "core/schemas/v3/products/softwareVersion.schema.tpl.json" + "core/v3/products/softwareVersion.schema.tpl.json" ] }, "scope": { @@ -1595,7 +1643,7 @@ "name": "Scope", "sameAs": null, "schemas": [ - "core/schemas/v3/products/model.schema.tpl.json" + "core/v3/products/model.schema.tpl.json" ] }, "semanticallyAnchoredTo": { @@ -1606,7 +1654,7 @@ "name": "Semantically anchored to", "sameAs": null, "schemas": [ - "core/schemas/v3/research/protocolExecution.schema.tpl.json" + "core/v3/research/protocolExecution.schema.tpl.json" ] }, "serializationFormat": { @@ -1616,7 +1664,7 @@ ], "name": "Serialization format", "schemas": [ - "core/schemas/v3/products/metaDataModelVersion.schema.tpl.json" + "core/v3/products/metaDataModelVersion.schema.tpl.json" ] }, "shortName": { @@ -1624,21 +1672,21 @@ "name": "Short name", "sameAs": null, "schemas": [ - "SANDS/schemas/v1/brainAtlas.schema.tpl.json", - "SANDS/schemas/v1/brainAtlasVersion.schema.tpl.json", - "SANDS/schemas/v1/coordinateSpace.schema.tpl.json", - "SANDS/schemas/v1/parcellationTerminology.schema.tpl.json", - "core/schemas/v3/actors/organization.schema.tpl.json", - "core/schemas/v3/data/license.schema.tpl.json", - "core/schemas/v3/products/dataset.schema.tpl.json", - "core/schemas/v3/products/datasetVersion.schema.tpl.json", - "core/schemas/v3/products/metaDataModel.schema.tpl.json", - "core/schemas/v3/products/metaDataModelVersion.schema.tpl.json", - "core/schemas/v3/products/model.schema.tpl.json", - "core/schemas/v3/products/modelVersion.schema.tpl.json", - "core/schemas/v3/products/project.schema.tpl.json", - "core/schemas/v3/products/software.schema.tpl.json", - "core/schemas/v3/products/softwareVersion.schema.tpl.json" + "SANDS/v2/atlas/brainAtlas.schema.tpl.json", + "SANDS/v2/atlas/brainAtlasVersion.schema.tpl.json", + "SANDS/v2/atlas/commonCoordinateSpace.schema.tpl.json", + "SANDS/v2/atlas/parcellationTerminology.schema.tpl.json", + "core/v3/actors/organization.schema.tpl.json", + "core/v3/data/license.schema.tpl.json", + "core/v3/products/dataset.schema.tpl.json", + "core/v3/products/datasetVersion.schema.tpl.json", + "core/v3/products/metaDataModel.schema.tpl.json", + "core/v3/products/metaDataModelVersion.schema.tpl.json", + "core/v3/products/model.schema.tpl.json", + "core/v3/products/modelVersion.schema.tpl.json", + "core/v3/products/project.schema.tpl.json", + "core/v3/products/software.schema.tpl.json", + "core/v3/products/softwareVersion.schema.tpl.json" ] }, "specialUsageRole": { @@ -1648,7 +1696,7 @@ ], "name": "Special usage role", "schemas": [ - "core/schemas/v3/data/file.schema.tpl.json" + "core/v3/data/file.schema.tpl.json" ] }, "species": { @@ -1659,17 +1707,17 @@ "name": "Species", "sameAs": null, "schemas": [ - "core/schemas/v3/research/subject.schema.tpl.json", - "core/schemas/v3/research/subjectGroup.schema.tpl.json", - "core/schemas/v3/research/tissueSample.schema.tpl.json", - "core/schemas/v3/research/tissueSampleCollection.schema.tpl.json" + "core/v3/research/subject.schema.tpl.json", + "core/v3/research/subjectGroup.schema.tpl.json", + "core/v3/research/tissueSample.schema.tpl.json", + "core/v3/research/tissueSampleCollection.schema.tpl.json" ] }, "specification": { "description": "Detailed and precise presentation of, or proposal for something.", "name": "Specification", "schemas": [ - "core/schemas/v3/data/contentType.schema.tpl.json" + "core/v3/data/contentType.schema.tpl.json" ] }, "specificationFormat": { @@ -1679,14 +1727,14 @@ ], "name": "Specification format", "schemas": [ - "core/schemas/v3/products/metaDataModelVersion.schema.tpl.json" + "core/v3/products/metaDataModelVersion.schema.tpl.json" ] }, "startDate": { "description": "Date in the Gregorian calendar at which something begins in time", "name": "Start date", "schemas": [ - "core/schemas/v3/actors/affiliation.schema.tpl.json" + "core/v3/actors/affiliation.schema.tpl.json" ] }, "storageSize": { @@ -1694,9 +1742,9 @@ "name": "Storage size", "sameAs": null, "schemas": [ - "core/schemas/v3/data/file.schema.tpl.json", - "core/schemas/v3/data/fileBundle.schema.tpl.json", - "core/schemas/v3/data/fileRepository.schema.tpl.json" + "core/v3/data/file.schema.tpl.json", + "core/v3/data/fileBundle.schema.tpl.json", + "core/v3/data/fileRepository.schema.tpl.json" ] }, "strain": { @@ -1707,10 +1755,10 @@ "name": "Strain", "sameAs": null, "schemas": [ - "core/schemas/v3/research/subject.schema.tpl.json", - "core/schemas/v3/research/subjectGroup.schema.tpl.json", - "core/schemas/v3/research/tissueSample.schema.tpl.json", - "core/schemas/v3/research/tissueSampleCollection.schema.tpl.json" + "core/v3/research/subject.schema.tpl.json", + "core/v3/research/subjectGroup.schema.tpl.json", + "core/v3/research/tissueSample.schema.tpl.json", + "core/v3/research/tissueSampleCollection.schema.tpl.json" ] }, "studiedSpecimen": { @@ -1723,7 +1771,7 @@ ], "name": "Studied specimen", "schemas": [ - "core/schemas/v3/products/datasetVersion.schema.tpl.json" + "core/v3/products/datasetVersion.schema.tpl.json" ] }, "studiedState": { @@ -1736,10 +1784,10 @@ ], "name": "Studied state", "schemas": [ - "core/schemas/v3/research/subject.schema.tpl.json", - "core/schemas/v3/research/subjectGroup.schema.tpl.json", - "core/schemas/v3/research/tissueSample.schema.tpl.json", - "core/schemas/v3/research/tissueSampleCollection.schema.tpl.json" + "core/v3/research/subject.schema.tpl.json", + "core/v3/research/subjectGroup.schema.tpl.json", + "core/v3/research/tissueSample.schema.tpl.json", + "core/v3/research/tissueSampleCollection.schema.tpl.json" ] }, "studyOption": { @@ -1755,11 +1803,12 @@ "https://openminds.ebrains.eu/controlledTerms/Species", "https://openminds.ebrains.eu/controlledTerms/Strain", "https://openminds.ebrains.eu/controlledTerms/TermSuggestion", - "https://openminds.ebrains.eu/sands/AnatomicalEntity" + "https://openminds.ebrains.eu/sands/CustomAnatomicalEntity", + "https://openminds.ebrains.eu/sands/ParcellationEntity" ], "name": "Study option", "schemas": [ - "core/schemas/v3/research/protocol.schema.tpl.json" + "core/v3/research/protocol.schema.tpl.json" ] }, "studyTarget": { @@ -1775,37 +1824,38 @@ "https://openminds.ebrains.eu/controlledTerms/Species", "https://openminds.ebrains.eu/controlledTerms/Strain", "https://openminds.ebrains.eu/controlledTerms/TermSuggestion", - "https://openminds.ebrains.eu/sands/AnatomicalEntity" + "https://openminds.ebrains.eu/sands/CustomAnatomicalEntity", + "https://openminds.ebrains.eu/sands/ParcellationEntity" ], "name": "Study target", "sameAs": null, "schemas": [ - "core/schemas/v3/products/model.schema.tpl.json", - "core/schemas/v3/research/protocolExecution.schema.tpl.json" + "core/v3/products/model.schema.tpl.json", + "core/v3/research/protocolExecution.schema.tpl.json" ] }, "suggestNewTerminology": { "description": "Proposal of a new distinct class to group related terms.", "name": "Suggest new terminology", "schemas": [ - "controlledTerms/schemas/v1/termSuggestion.schema.tpl.json" + "controlledTerms/v1/termSuggestion.schema.tpl.json" ] }, "supportChannel": { "description": "Way of communication used to interact with users or customers.", "name": "Support channel", "schemas": [ - "core/schemas/v3/products/datasetVersion.schema.tpl.json", - "core/schemas/v3/products/metaDataModelVersion.schema.tpl.json", - "core/schemas/v3/products/modelVersion.schema.tpl.json", - "core/schemas/v3/products/softwareVersion.schema.tpl.json" + "core/v3/products/datasetVersion.schema.tpl.json", + "core/v3/products/metaDataModelVersion.schema.tpl.json", + "core/v3/products/modelVersion.schema.tpl.json", + "core/v3/products/softwareVersion.schema.tpl.json" ] }, "synonym": { "description": "Words or expressions used in the same language that have the same or nearly the same meaning in some or all senses.", "name": "Synonym", "schemas": [ - "core/schemas/v3/data/contentType.schema.tpl.json" + "core/v3/data/contentType.schema.tpl.json" ] }, "technique": { @@ -1815,19 +1865,15 @@ ], "name": "Technique", "schemas": [ - "core/schemas/v3/research/protocol.schema.tpl.json" + "core/v3/research/protocol.schema.tpl.json" ] }, "terminology": { + "deprecated": true, "description": "Nomenclature for a particular field of study.", - "linkedTypes": [ - "https://openminds.ebrains.eu/sands/ParcellationTerminology" - ], "name": "Terminology", "sameAs": null, - "schemas": [ - "SANDS/schemas/v1/brainAtlasVersion.schema.tpl.json" - ] + "schemas": [] }, "type": { "description": "Distinct class to which a group of entities or concepts with similar characteristics or attributes belong to.", @@ -1839,10 +1885,10 @@ "name": "Type", "sameAs": null, "schemas": [ - "core/schemas/v3/products/datasetVersion.schema.tpl.json", - "core/schemas/v3/products/metaDataModelVersion.schema.tpl.json", - "core/schemas/v3/research/tissueSample.schema.tpl.json", - "core/schemas/v3/research/tissueSampleCollection.schema.tpl.json" + "core/v3/products/datasetVersion.schema.tpl.json", + "core/v3/products/metaDataModelVersion.schema.tpl.json", + "core/v3/research/tissueSample.schema.tpl.json", + "core/v3/research/tissueSampleCollection.schema.tpl.json" ] }, "typeOfUncertainty": { @@ -1852,14 +1898,14 @@ ], "name": "Type of uncertainty", "schemas": [ - "core/schemas/v3/miscellaneous/quantitativeValue.schema.tpl.json" + "core/v3/miscellaneous/quantitativeValue.schema.tpl.json" ] }, "uncertainty": { "description": "Quanitative value range defining the uncertainty of a measurement.", "name": "Uncertainty", "schemas": [ - "core/schemas/v3/miscellaneous/quantitativeValue.schema.tpl.json" + "core/v3/miscellaneous/quantitativeValue.schema.tpl.json" ] }, "unit": { @@ -1870,8 +1916,8 @@ "name": "Unit", "sameAs": null, "schemas": [ - "core/schemas/v3/miscellaneous/quantitativeValue.schema.tpl.json", - "core/schemas/v3/miscellaneous/quantitativeValueRange.schema.tpl.json" + "core/v3/miscellaneous/quantitativeValue.schema.tpl.json", + "core/v3/miscellaneous/quantitativeValueRange.schema.tpl.json" ] }, "value": { @@ -1879,9 +1925,9 @@ "name": "Value", "sameAs": null, "schemas": [ - "core/schemas/v3/miscellaneous/quantitativeValue.schema.tpl.json", - "core/schemas/v3/research/numericalParameter.schema.tpl.json", - "core/schemas/v3/research/stringParameter.schema.tpl.json" + "core/v3/miscellaneous/quantitativeValue.schema.tpl.json", + "core/v3/research/numericalParameter.schema.tpl.json", + "core/v3/research/stringParameter.schema.tpl.json" ] }, "versionIdentifier": { @@ -1889,12 +1935,15 @@ "name": "Version identifier", "sameAs": null, "schemas": [ - "SANDS/schemas/v1/brainAtlasVersion.schema.tpl.json", - "SANDS/schemas/v1/coordinateSpace.schema.tpl.json", - "core/schemas/v3/products/datasetVersion.schema.tpl.json", - "core/schemas/v3/products/metaDataModelVersion.schema.tpl.json", - "core/schemas/v3/products/modelVersion.schema.tpl.json", - "core/schemas/v3/products/softwareVersion.schema.tpl.json" + "SANDS/v2/atlas/atlasAnnotation.schema.tpl.json", + "SANDS/v2/atlas/brainAtlasVersion.schema.tpl.json", + "SANDS/v2/atlas/commonCoordinateSpace.schema.tpl.json", + "SANDS/v2/atlas/parcellationEntity.schema.tpl.json", + "SANDS/v2/atlas/parcellationTerminology.schema.tpl.json", + "core/v3/products/datasetVersion.schema.tpl.json", + "core/v3/products/metaDataModelVersion.schema.tpl.json", + "core/v3/products/modelVersion.schema.tpl.json", + "core/v3/products/softwareVersion.schema.tpl.json" ] }, "versionInnovation": { @@ -1902,48 +1951,51 @@ "name": "Version innovation", "sameAs": null, "schemas": [ - "SANDS/schemas/v1/brainAtlasVersion.schema.tpl.json", - "core/schemas/v3/products/datasetVersion.schema.tpl.json", - "core/schemas/v3/products/metaDataModelVersion.schema.tpl.json", - "core/schemas/v3/products/modelVersion.schema.tpl.json", - "core/schemas/v3/products/softwareVersion.schema.tpl.json" + "SANDS/v2/atlas/atlasAnnotation.schema.tpl.json", + "SANDS/v2/atlas/brainAtlasVersion.schema.tpl.json", + "SANDS/v2/atlas/parcellationEntity.schema.tpl.json", + "SANDS/v2/atlas/parcellationTerminology.schema.tpl.json", + "core/v3/products/datasetVersion.schema.tpl.json", + "core/v3/products/metaDataModelVersion.schema.tpl.json", + "core/v3/products/modelVersion.schema.tpl.json", + "core/v3/products/softwareVersion.schema.tpl.json" ] }, "visualizedIn": { "description": "Reference to an image in which something is visible.", "linkedTypes": [ - "https://openminds.ebrains.eu/sands/Image" + "https://openminds.ebrains.eu/core/File" ], "name": "Visualized in", "sameAs": null, "schemas": [ - "SANDS/schemas/v1/annotation.schema.tpl.json", - "SANDS/schemas/v1/electrodeContact.schema.tpl.json" + "SANDS/v2/atlas/atlasAnnotation.schema.tpl.json", + "SANDS/v2/non-atlas/customAnnotation.schema.tpl.json", + "SANDS/v2/non-atlas/electrodeContact.schema.tpl.json" ] }, "voxelSize": { + "deprecated": true, "description": "Extent of the discrete elements comprising a three-dimensional entity.", "name": "Voxel size", "sameAs": null, - "schemas": [ - "SANDS/schemas/v1/image.schema.tpl.json" - ] + "schemas": [] }, "webpage": { "description": "Hypertext document (block of information) found on the World Wide Web.", "name": "Webpage", "schemas": [ - "core/schemas/v3/data/license.schema.tpl.json" + "core/v3/data/license.schema.tpl.json" ] }, "weight": { "description": "Amount that a thing or being weighs.", "name": "Weight", "schemas": [ - "core/schemas/v3/research/subjectGroupState.schema.tpl.json", - "core/schemas/v3/research/subjectState.schema.tpl.json", - "core/schemas/v3/research/tissueSampleCollectionState.schema.tpl.json", - "core/schemas/v3/research/tissueSampleState.schema.tpl.json" + "core/v3/research/subjectGroupState.schema.tpl.json", + "core/v3/research/subjectState.schema.tpl.json", + "core/v3/research/tissueSampleCollectionState.schema.tpl.json", + "core/v3/research/tissueSampleState.schema.tpl.json" ] }, "year": { @@ -1951,7 +2003,7 @@ "name": "Year", "sameAs": null, "schemas": [ - "core/schemas/v3/data/copyright.schema.tpl.json" + "core/v3/data/copyright.schema.tpl.json" ] } } \ No newline at end of file diff --git a/vocab/types.json b/vocab/types.json index 2f74077464..114a1ca2bb 100644 --- a/vocab/types.json +++ b/vocab/types.json @@ -515,20 +515,27 @@ "name": "Url" }, "https://openminds.ebrains.eu/sands/AnatomicalEntity": { + "deprecated": true, "description": "Structured information on an anatomical entity.", "name": "Anatomical entity", "translatableTo": null }, "https://openminds.ebrains.eu/sands/AnatomicalEntityRelation": { + "deprecated": true, "description": "Structured information on the relation between one anatomical entity and another.", "name": "Anatomical entity relation", "translatableTo": null }, "https://openminds.ebrains.eu/sands/Annotation": { + "deprecated": true, "description": "Structured information on an image annotation.", "name": "Annotation", "translatableTo": null }, + "https://openminds.ebrains.eu/sands/AtlasAnnotation": { + "description": null, + "name": "Atlas annotation" + }, "https://openminds.ebrains.eu/sands/AtlasTerminology": { "deprecated": true, "description": null, @@ -544,16 +551,33 @@ "name": "Brain atlas version", "translatableTo": null }, + "https://openminds.ebrains.eu/sands/CommonCoordinateSpace": { + "description": null, + "name": "Common coordinate space" + }, "https://openminds.ebrains.eu/sands/CoordinatePoint": { "description": "Structured information on a coordinate point.", "name": "Coordinate point", "translatableTo": null }, "https://openminds.ebrains.eu/sands/CoordinateSpace": { + "deprecated": true, "description": "Structured information on a coordinate space.", "name": "Coordinate space", "translatableTo": null }, + "https://openminds.ebrains.eu/sands/CustomAnatomicalEntity": { + "description": null, + "name": "Custom anatomical entity" + }, + "https://openminds.ebrains.eu/sands/CustomAnnotation": { + "description": null, + "name": "Custom annotation" + }, + "https://openminds.ebrains.eu/sands/CustomCoordinateSpace": { + "description": null, + "name": "Custom coordinate space" + }, "https://openminds.ebrains.eu/sands/Electrode": { "description": "Structured information on an electrode.", "name": "Electrode", @@ -570,14 +594,27 @@ "translatableTo": null }, "https://openminds.ebrains.eu/sands/Image": { + "deprecated": true, "description": "Structured information on an image.", "name": "Image", "translatableTo": null }, + "https://openminds.ebrains.eu/sands/ParcellationEntity": { + "description": null, + "name": "Parcellation entity" + }, "https://openminds.ebrains.eu/sands/ParcellationTerminology": { "description": null, "name": "Parcellation terminology" }, + "https://openminds.ebrains.eu/sands/QualitativeRelationAssessment": { + "description": null, + "name": "Qualitative relation assessment" + }, + "https://openminds.ebrains.eu/sands/QuantitativeRelationAssessment": { + "description": null, + "name": "Quantitative relation assessment" + }, "https://schema.hbp.eu/sands/AtlasTerminology": { "deprecated": true, "description": "Structured information on an atlas terminology.",