Dockerfile

FROM r-base:latest
MAINTAINER eterna2 <eterna2@hotmail.com>

RUN apt-get update && apt-get install -y \
  automake \
  autotools-dev \
  g++ \
  git \
  libcurl4-gnutls-dev \
  libfuse-dev \
  libssl-dev \
  libxml2-dev \
  make \
  pkg-config \
  supervisor \
  && git clone https://github.com/s3fs-fuse/s3fs-fuse.git \ 
  && cd s3fs-fuse/ && ./autogen.sh && ./configure && make && make install \
  && apt-get clean 
  
WORKDIR /home
ENV R_LIBS="/home/rlib"

COPY config/fuse.conf /etc/fuse.conf
COPY config/supervisord.conf /etc/supervisor/conf.d/supervisord.conf

COPY scripts/runS3fs.sh scripts/runS3fs.sh
COPY scripts/setup.R scripts/setup.R
COPY scripts/setupBio.R scripts/setupBio.R
COPY scripts/setupPackages.R scripts/setupPackages.R
RUN chmod +x scripts/runS3fs.sh

COPY scripts/cmd.sh /usr/local/bin/cmd
RUN chmod +x /usr/local/bin/cmd

COPY packages /home/packages
COPY rscripts /home/rscripts

RUN mkdir /home/rlib
RUN Rscript -e '.libPaths( c("/home/rlib",.libPaths()) )'

WORKDIR /home/rscripts
CMD ["/usr/local/bin/cmd"]