Z

code/AFqC.py

@@ -111,6 +111,13 @@ def main():
 
     print(f'QC passed for {submission}, generating plots...')
     # generate plots
+    if os.path.exists(output+'run-1'):
+        output = output+'run-2'
+    elif os.path.exists(output+'run-2'):
+        output = output+'run-3'
+    else:
+        output = output+'run-1'
+    os.makedirs(output, exist_ok=True)
     plots(submission, output, sub)
     return print('QC and Plots complete')
 

jatosAPI.py

@@ -144,15 +144,19 @@ def convert_beh():
 
 
 
-
     paths = []
     print(dic)
     for i in range(len(dic)):
         i += 1
         for sub in np.unique(dic[i]['subject_id']):
             print(sub)
-            paths.append((f'./data/{sub}/processed'+"/{0}_{1}_{2}"+".csv").format(sub,dic[i]['task'][0],dic[i]['task_vers'][0]))
-
+            if os.path.exists(f'./data/{sub}/processed/run-1'):
+                paths.append((f'./data/{sub}/processed/run-2'+"/{0}_{1}_{2}"+".csv").format(sub,dic[i]['task'][0],dic[i]['task_vers'][0]))
+            elif os.path.exists(f'./data/{sub}/processed/run-2'):
+                paths.append((f'./data/{sub}/processed/run-1'+"/{0}_{1}_{2}"+".csv").format(sub,dic[i]['task'][0],dic[i]['task_vers'][0]))
+            else:
+                paths.append((f'./data/{sub}/processed/run-1'+"/{0}_{1}_{2}"+".csv").format(sub,dic[i]['task'][0],dic[i]['task_vers'][0]))
+
 
 
         for path in paths: