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auto commit -> added subject task data #17

	name: Task1 QC
	on: [push]

	jobs:
	process_raw:
	runs-on: self-hosted
	steps:
	- name: checkout code and return recently uploaded file in data
	uses: actions/checkout@v2
	- name: get most recent file
	run: \|
	git config pull.rebase false
	data=$(ls -t /data/*.txt \| head -n 1) >> $GITHUB_ENV
	echo "Most recent file: $data"

	- name: set up python
	run: \|
	python -m pip install --upgrade pip
	pip install -r requirements.txt

	- name: parse raw
	run: \|
	IFS='_' read -r sub task version <<< "$data"
	echo "sub=$sub" >> $GITHUB_ENV
	echo "version=$version" >> $GITHUB_ENV
	echo "Subject: $sub"
	echo "Version: $version"

	- name: convert raw
	run: \|
	mkdir data/${sub}/processed \
	python code/ConvertBeh.py -submission $data -out data/$sub/processed -sub $sub -task AF -taskvers $version

	run_qc:
	runs-on: self-hosted
	needs: process_raw
	steps:
	- name: run quality control
	run: python AFqC.py -s data/${sub}/processed/${sub}*.csv -o data/${sub}/ -sub ${sub} \| tee data/${sub}/qc.log

	push:
	runs-on: self-hosted
	needs: run_qc
	steps:
	- name: push results
	run: \|
	git config user.email [email protected]
	git config user.name "Zak Gilliam"
	git add -A
	git commit -m "QC results for ${sub}"
	git push origin main

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