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sample_genome.gff
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##gff-version 3
#!gff-spec-version 1.21
#!processor NCBI annotwriter
#!genome-build R64
#!genome-build-accession NCBI_Assembly:GCF_000146045.2
#!annotation-source SGD R64-3-1
##sequence-region Chr01 1 230218
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=559292
Chr01 RefSeq region 1 230218 . + . ID=Chr01:1..230218;Dbxref=taxon:559292;Name=I;chromosome=I;gbkey=Src;genome=chromosome;mol_type=genomic DNA;strain=S288C
Chr01 RefSeq telomere 1 801 . - . ID=id-Chr01:1..801;Dbxref=SGD:S000028862;Note=TEL01L%3B Telomeric region on the left arm of Chromosome I%3B composed of an X element core sequence%2C X element combinatorial repeats%2C and a short terminal stretch of telomeric repeats;gbkey=telomere
Chr01 RefSeq origin_of_replication 707 776 . + . ID=id-Chr01:707..776;Dbxref=SGD:S000121252;Note=ARS102%3B Autonomously Replicating Sequence;gbkey=rep_origin
Chr01 RefSeq gene 1807 2169 . - . ID=gene-YAL068C;Dbxref=GeneID:851229;Name=PAU8;end_range=2169,.;gbkey=Gene;gene=PAU8;gene_biotype=protein_coding;locus_tag=YAL068C;partial=true;start_range=.,1807
Chr01 RefSeq mRNA 1807 2169 . - . ID=rna-NM_001180043.1;Parent=gene-YAL068C;Dbxref=GeneID:851229,Genbank:NM_001180043.1;Name=NM_001180043.1;end_range=2169,.;gbkey=mRNA;gene=PAU8;locus_tag=YAL068C;partial=true;product=seripauperin PAU8;start_range=.,1807;transcript_id=NM_001180043.1
Chr01 RefSeq exon 1807 2169 . - . ID=exon-NM_001180043.1-1;Parent=rna-NM_001180043.1;Dbxref=GeneID:851229,Genbank:NM_001180043.1;end_range=2169,.;gbkey=mRNA;gene=PAU8;locus_tag=YAL068C;partial=true;product=seripauperin PAU8;start_range=.,1807;transcript_id=NM_001180043.1
Chr01 RefSeq CDS 1807 2169 . - 0 ID=cds-NP_009332.1;Parent=rna-NM_001180043.1;Dbxref=SGD:S000002142,GeneID:851229,Genbank:NP_009332.1;Name=NP_009332.1;Note=hypothetical protein%3B member of the seripauperin multigene family encoded mainly in subtelomeric regions;experiment=EXISTENCE:mutant phenotype:GO:0030437 ascospore formation [PMID:12586695],EXISTENCE:mutant phenotype:GO:0045944 positive regulation of transcription by RNA polymerase II [PMID:12586695];gbkey=CDS;gene=PAU8;locus_tag=YAL068C;product=seripauperin PAU8;protein_id=NP_009332.1
Chr01 RefSeq gene 2480 2707 . + . ID=gene-YAL067W-A;Dbxref=GeneID:1466426;Name=YAL067W-A;end_range=2707,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YAL067W-A;partial=true;start_range=.,2480
Chr01 RefSeq mRNA 2480 2707 . + . ID=rna-NM_001184582.1;Parent=gene-YAL067W-A;Dbxref=GeneID:1466426,Genbank:NM_001184582.1;Name=NM_001184582.1;end_range=2707,.;gbkey=mRNA;locus_tag=YAL067W-A;partial=true;product=uncharacterized protein;start_range=.,2480;transcript_id=NM_001184582.1
Chr01 RefSeq exon 2480 2707 . + . ID=exon-NM_001184582.1-1;Parent=rna-NM_001184582.1;Dbxref=GeneID:1466426,Genbank:NM_001184582.1;end_range=2707,.;gbkey=mRNA;locus_tag=YAL067W-A;partial=true;product=uncharacterized protein;start_range=.,2480;transcript_id=NM_001184582.1
Chr01 RefSeq CDS 2480 2707 . + 0 ID=cds-NP_878038.1;Parent=rna-NM_001184582.1;Dbxref=SGD:S000028593,GeneID:1466426,Genbank:NP_878038.1;Name=NP_878038.1;Note=hypothetical protein%3B identified by gene-trapping%2C microarray-based expression analysis%2C and genome-wide homology searching;gbkey=CDS;locus_tag=YAL067W-A;product=uncharacterized protein;protein_id=NP_878038.1
Chr01 RefSeq gene 7235 9016 . - . ID=gene-YAL067C;Dbxref=GeneID:851230;Name=SEO1;end_range=9016,.;gbkey=Gene;gene=SEO1;gene_biotype=protein_coding;locus_tag=YAL067C;partial=true;start_range=.,7235
Chr01 RefSeq mRNA 7235 9016 . - . ID=rna-NM_001178208.1;Parent=gene-YAL067C;Dbxref=GeneID:851230,Genbank:NM_001178208.1;Name=NM_001178208.1;end_range=9016,.;gbkey=mRNA;gene=SEO1;locus_tag=YAL067C;partial=true;product=putative permease SEO1;start_range=.,7235;transcript_id=NM_001178208.1
Chr01 RefSeq exon 7235 9016 . - . ID=exon-NM_001178208.1-1;Parent=rna-NM_001178208.1;Dbxref=GeneID:851230,Genbank:NM_001178208.1;end_range=9016,.;gbkey=mRNA;gene=SEO1;locus_tag=YAL067C;partial=true;product=putative permease SEO1;start_range=.,7235;transcript_id=NM_001178208.1
Chr01 RefSeq CDS 7235 9016 . - 0 ID=cds-NP_009333.1;Parent=rna-NM_001178208.1;Dbxref=SGD:S000000062,GeneID:851230,Genbank:NP_009333.1;Name=NP_009333.1;Note=Putative permease%3B member of the allantoate transporter subfamily of the major facilitator superfamily%3B mutation confers resistance to ethionine sulfoxide;experiment=EXISTENCE:direct assay:GO:0071944 cell periphery [PMID:26928762],EXISTENCE:mutant phenotype:GO:0055085 transmembrane transport [PMID:8893857];gbkey=CDS;gene=SEO1;locus_tag=YAL067C;product=putative permease SEO1;protein_id=NP_009333.1
Chr01 RefSeq origin_of_replication 7997 8547 . + . ID=id-Chr01:7997..8547;Dbxref=SGD:S000121253;Note=ARS103%3B Autonomously Replicating Sequence%3B replication origin of very weak function;gbkey=rep_origin
Chr01 RefSeq gene 11565 11951 . - . ID=gene-YAL065C;Dbxref=GeneID:851232;Name=YAL065C;end_range=11951,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YAL065C;partial=true;start_range=.,11565
Chr01 RefSeq mRNA 11565 11951 . - . ID=rna-NM_001179897.1;Parent=gene-YAL065C;Dbxref=GeneID:851232,Genbank:NM_001179897.1;Name=NM_001179897.1;end_range=11951,.;gbkey=mRNA;locus_tag=YAL065C;partial=true;product=uncharacterized protein;start_range=.,11565;transcript_id=NM_001179897.1
Chr01 RefSeq exon 11565 11951 . - . ID=exon-NM_001179897.1-1;Parent=rna-NM_001179897.1;Dbxref=GeneID:851232,Genbank:NM_001179897.1;end_range=11951,.;gbkey=mRNA;locus_tag=YAL065C;partial=true;product=uncharacterized protein;start_range=.,11565;transcript_id=NM_001179897.1
Chr01 RefSeq CDS 11565 11951 . - 0 ID=cds-NP_009335.1;Parent=rna-NM_001179897.1;Dbxref=SGD:S000001817,GeneID:851232,Genbank:NP_009335.1;Name=NP_009335.1;Note=hypothetical protein%3B shows sequence similarity to FLO1 and other flocculins;gbkey=CDS;locus_tag=YAL065C;product=uncharacterized protein;protein_id=NP_009335.1
Chr01 RefSeq gene 12046 12426 . + . ID=gene-YAL064W-B;Dbxref=GeneID:851233;Name=YAL064W-B;end_range=12426,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YAL064W-B;partial=true;start_range=.,12046
Chr01 RefSeq mRNA 12046 12426 . + . ID=rna-NM_001180042.1;Parent=gene-YAL064W-B;Dbxref=GeneID:851233,Genbank:NM_001180042.1;Name=NM_001180042.1;end_range=12426,.;gbkey=mRNA;locus_tag=YAL064W-B;partial=true;product=uncharacterized protein;start_range=.,12046;transcript_id=NM_001180042.1
Chr01 RefSeq exon 12046 12426 . + . ID=exon-NM_001180042.1-1;Parent=rna-NM_001180042.1;Dbxref=GeneID:851233,Genbank:NM_001180042.1;end_range=12426,.;gbkey=mRNA;locus_tag=YAL064W-B;partial=true;product=uncharacterized protein;start_range=.,12046;transcript_id=NM_001180042.1
Chr01 RefSeq CDS 12046 12426 . + 0 ID=cds-NP_009336.1;Parent=rna-NM_001180042.1;Dbxref=SGD:S000002141,GeneID:851233,Genbank:NP_009336.1;Name=NP_009336.1;Note=Fungal-specific hypothetical protein;experiment=EXISTENCE:direct assay:GO:0005783 endoplasmic reticulum [PMID:26928762];gbkey=CDS;locus_tag=YAL064W-B;product=uncharacterized protein;protein_id=NP_009336.1
Chr01 RefSeq gene 13363 13743 . - . ID=gene-YAL064C-A;Dbxref=GeneID:851234;Name=TDA8;end_range=13743,.;gbkey=Gene;gene=TDA8;gene_biotype=protein_coding;gene_synonym=YAL065C-A;locus_tag=YAL064C-A;partial=true;start_range=.,13363
Chr01 RefSeq mRNA 13363 13743 . - . ID=rna-NM_001180041.1;Parent=gene-YAL064C-A;Dbxref=GeneID:851234,Genbank:NM_001180041.1;Name=NM_001180041.1;end_range=13743,.;gbkey=mRNA;gene=TDA8;locus_tag=YAL064C-A;partial=true;product=Tda8p;start_range=.,13363;transcript_id=NM_001180041.1
Chr01 RefSeq exon 13363 13743 . - . ID=exon-NM_001180041.1-1;Parent=rna-NM_001180041.1;Dbxref=GeneID:851234,Genbank:NM_001180041.1;end_range=13743,.;gbkey=mRNA;gene=TDA8;locus_tag=YAL064C-A;partial=true;product=Tda8p;start_range=.,13363;transcript_id=NM_001180041.1
Chr01 RefSeq CDS 13363 13743 . - 0 ID=cds-NP_058136.1;Parent=rna-NM_001180041.1;Dbxref=SGD:S000002140,GeneID:851234,Genbank:NP_058136.1;Name=NP_058136.1;Note=hypothetical protein%3B null mutant is sensitive to expression of the top1-T722A allele%3B not an essential gene;gbkey=CDS;gene=TDA8;locus_tag=YAL064C-A;product=Tda8p;protein_id=NP_058136.1
Chr01 RefSeq gene 21566 21850 . + . ID=gene-YAL064W;Dbxref=GeneID:851235;Name=YAL064W;end_range=21850,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YAL064W;partial=true;start_range=.,21566
Chr01 RefSeq mRNA 21566 21850 . + . ID=rna-NM_001178206.2;Parent=gene-YAL064W;Dbxref=GeneID:851235,Genbank:NM_001178206.2;Name=NM_001178206.2;end_range=21850,.;gbkey=mRNA;locus_tag=YAL064W;partial=true;product=uncharacterized protein;start_range=.,21566;transcript_id=NM_001178206.2
Chr01 RefSeq exon 21566 21850 . + . ID=exon-NM_001178206.2-1;Parent=rna-NM_001178206.2;Dbxref=GeneID:851235,Genbank:NM_001178206.2;end_range=21850,.;gbkey=mRNA;locus_tag=YAL064W;partial=true;product=uncharacterized protein;start_range=.,21566;transcript_id=NM_001178206.2
Chr01 RefSeq CDS 21566 21850 . + 0 ID=cds-NP_009337.2;Parent=rna-NM_001178206.2;Dbxref=SGD:S000000060,GeneID:851235,Genbank:NP_009337.2;Name=NP_009337.2;Note=hypothetical protein%3B may interact with ribosomes%2C based on co-purification experiments;gbkey=CDS;locus_tag=YAL064W;product=uncharacterized protein;protein_id=NP_009337.2
Chr01 RefSeq long_terminal_repeat 22230 22552 . + . ID=id-Chr01:22230..22552;Dbxref=SGD:S000006787;Note=Ty1 LTR;gbkey=repeat_region;rpt_type=long_terminal_repeat
Chr01 RefSeq gene 22395 22685 . - . ID=gene-YAL063C-A;Dbxref=GeneID:1466427;Name=YAL063C-A;end_range=22685,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YAL063C-A;partial=true;start_range=.,22395
Chr01 RefSeq mRNA 22395 22685 . - . ID=rna-NM_001184642.1;Parent=gene-YAL063C-A;Dbxref=GeneID:1466427,Genbank:NM_001184642.1;Name=NM_001184642.1;end_range=22685,.;gbkey=mRNA;locus_tag=YAL063C-A;partial=true;product=uncharacterized protein;start_range=.,22395;transcript_id=NM_001184642.1
Chr01 RefSeq exon 22395 22685 . - . ID=exon-NM_001184642.1-1;Parent=rna-NM_001184642.1;Dbxref=GeneID:1466427,Genbank:NM_001184642.1;end_range=22685,.;gbkey=mRNA;locus_tag=YAL063C-A;partial=true;product=uncharacterized protein;start_range=.,22395;transcript_id=NM_001184642.1
Chr01 RefSeq CDS 22395 22685 . - 0 ID=cds-NP_878039.1;Parent=rna-NM_001184642.1;Dbxref=SGD:S000028813,GeneID:1466427,Genbank:NP_878039.1;Name=NP_878039.1;Note=hypothetical protein%3B identified by expression profiling and mass spectrometry;gbkey=CDS;locus_tag=YAL063C-A;product=uncharacterized protein;protein_id=NP_878039.1
Chr01 RefSeq gene 24000 27968 . - . ID=gene-YAL063C;Dbxref=GeneID:851236;Name=FLO9;end_range=27968,.;gbkey=Gene;gene=FLO9;gene_biotype=protein_coding;locus_tag=YAL063C;partial=true;start_range=.,24000
Chr01 RefSeq mRNA 24000 27968 . - . ID=rna-NM_001178205.1;Parent=gene-YAL063C;Dbxref=GeneID:851236,Genbank:NM_001178205.1;Name=NM_001178205.1;end_range=27968,.;gbkey=mRNA;gene=FLO9;locus_tag=YAL063C;partial=true;product=flocculin FLO9;start_range=.,24000;transcript_id=NM_001178205.1
Chr01 RefSeq exon 24000 27968 . - . ID=exon-NM_001178205.1-1;Parent=rna-NM_001178205.1;Dbxref=GeneID:851236,Genbank:NM_001178205.1;end_range=27968,.;gbkey=mRNA;gene=FLO9;locus_tag=YAL063C;partial=true;product=flocculin FLO9;start_range=.,24000;transcript_id=NM_001178205.1
Chr01 RefSeq CDS 24000 27968 . - 0 ID=cds-NP_009338.1;Parent=rna-NM_001178205.1;Dbxref=SGD:S000000059,GeneID:851236,Genbank:NP_009338.1;Name=NP_009338.1;Note=Lectin-like protein with similarity to Flo1p%3B thought to be expressed and involved in flocculation;experiment=EXISTENCE:mutant phenotype:GO:0000128 flocculation [PMID:19420680|PMID:19087208],EXISTENCE:mutant phenotype:GO:0031589 cell-substrate adhesion [PMID:19087208];gbkey=CDS;gene=FLO9;locus_tag=YAL063C;product=flocculin FLO9;protein_id=NP_009338.1
Chr01 RefSeq origin_of_replication 30946 31183 . + . ID=id-Chr01:30946..31183;Dbxref=SGD:S000118317;Note=ARS104%3B Autonomously Replicating Sequence;gbkey=rep_origin
Chr01 RefSeq gene 31567 32940 . + . ID=gene-YAL062W;Dbxref=GeneID:851237;Name=GDH3;end_range=32940,.;gbkey=Gene;gene=GDH3;gene_biotype=protein_coding;gene_synonym=FUN51;locus_tag=YAL062W;partial=true;start_range=.,31567
Chr01 RefSeq mRNA 31567 32940 . + . ID=rna-NM_001178204.1;Parent=gene-YAL062W;Dbxref=GeneID:851237,Genbank:NM_001178204.1;Name=NM_001178204.1;end_range=32940,.;gbkey=mRNA;gene=GDH3;locus_tag=YAL062W;partial=true;product=glutamate dehydrogenase (NADP(+)) GDH3;start_range=.,31567;transcript_id=NM_001178204.1
Chr01 RefSeq exon 31567 32940 . + . ID=exon-NM_001178204.1-1;Parent=rna-NM_001178204.1;Dbxref=GeneID:851237,Genbank:NM_001178204.1;end_range=32940,.;gbkey=mRNA;gene=GDH3;locus_tag=YAL062W;partial=true;product=glutamate dehydrogenase (NADP(+)) GDH3;start_range=.,31567;transcript_id=NM_001178204.1
Chr01 RefSeq CDS 31567 32940 . + 0 ID=cds-NP_009339.1;Parent=rna-NM_001178204.1;Dbxref=SGD:S000000058,GeneID:851237,Genbank:NP_009339.1;Name=NP_009339.1;Note=NADP(+)-dependent glutamate dehydrogenase%3B synthesizes glutamate from ammonia and alpha-ketoglutarate%3B rate of alpha-ketoglutarate utilization differs from Gdh1p%3B expression regulated by nitrogen and carbon sources%3B GDH3 has a paralog%2C GDH1%2C that arose from the whole genome duplication;experiment=EXISTENCE:direct assay:GO:0004354 glutamate dehydrogenase (NADP+) activity [PMID:11562373],EXISTENCE:direct assay:GO:0005634 nucleus [PMID:4126],EXISTENCE:direct assay:GO:0005739 mitochondrion [PMID:14576278|PMID:16823961],EXISTENCE:mutant phenotype:GO:0004354 glutamate dehydrogenase (NADP+) activity [PMID:9287019],EXISTENCE:mutant phenotype:GO:0006537 glutamate biosynthetic process [PMID:9287019];gbkey=CDS;gene=GDH3;locus_tag=YAL062W;product=glutamate dehydrogenase (NADP(+)) GDH3;protein_id=NP_009339.1
Chr01 RefSeq gene 33448 34701 . + . ID=gene-YAL061W;Dbxref=GeneID:851238;Name=BDH2;end_range=34701,.;gbkey=Gene;gene=BDH2;gene_biotype=protein_coding;locus_tag=YAL061W;partial=true;start_range=.,33448
Chr01 RefSeq mRNA 33448 34701 . + . ID=rna-NM_001178203.1;Parent=gene-YAL061W;Dbxref=GeneID:851238,Genbank:NM_001178203.1;Name=NM_001178203.1;end_range=34701,.;gbkey=mRNA;gene=BDH2;locus_tag=YAL061W;partial=true;product=putative dehydrogenase BDH2;start_range=.,33448;transcript_id=NM_001178203.1
Chr01 RefSeq exon 33448 34701 . + . ID=exon-NM_001178203.1-1;Parent=rna-NM_001178203.1;Dbxref=GeneID:851238,Genbank:NM_001178203.1;end_range=34701,.;gbkey=mRNA;gene=BDH2;locus_tag=YAL061W;partial=true;product=putative dehydrogenase BDH2;start_range=.,33448;transcript_id=NM_001178203.1
Chr01 RefSeq CDS 33448 34701 . + 0 ID=cds-NP_009340.1;Parent=rna-NM_001178203.1;Dbxref=SGD:S000000057,GeneID:851238,Genbank:NP_009340.1;Name=NP_009340.1;Note=Putative medium-chain alcohol dehydrogenase with similarity to BDH1%3B transcription induced by constitutively active PDR1 and PDR3;experiment=EXISTENCE:direct assay:GO:0005634 nucleus [PMID:14562095],EXISTENCE:direct assay:GO:0005737 cytoplasm [PMID:14562095];gbkey=CDS;gene=BDH2;locus_tag=YAL061W;product=putative dehydrogenase BDH2;protein_id=NP_009340.1
Chr01 RefSeq gene 35155 36303 . + . ID=gene-YAL060W;Dbxref=GeneID:851239;Name=BDH1;end_range=36303,.;gbkey=Gene;gene=BDH1;gene_biotype=protein_coding;locus_tag=YAL060W;partial=true;start_range=.,35155
Chr01 RefSeq mRNA 35155 36303 . + . ID=rna-NM_001178202.2;Parent=gene-YAL060W;Dbxref=GeneID:851239,Genbank:NM_001178202.2;Name=NM_001178202.2;end_range=36303,.;gbkey=mRNA;gene=BDH1;locus_tag=YAL060W;partial=true;product=(R%2CR)-butanediol dehydrogenase;start_range=.,35155;transcript_id=NM_001178202.2
Chr01 RefSeq exon 35155 36303 . + . ID=exon-NM_001178202.2-1;Parent=rna-NM_001178202.2;Dbxref=GeneID:851239,Genbank:NM_001178202.2;end_range=36303,.;gbkey=mRNA;gene=BDH1;locus_tag=YAL060W;partial=true;product=(R%2CR)-butanediol dehydrogenase;start_range=.,35155;transcript_id=NM_001178202.2
Chr01 RefSeq CDS 35155 36303 . + 0 ID=cds-NP_009341.2;Parent=rna-NM_001178202.2;Dbxref=SGD:S000000056,GeneID:851239,Genbank:NP_009341.2;Name=NP_009341.2;Note=NAD-dependent (R%2CR)-butanediol dehydrogenase%3B catalyzes oxidation of (R%2CR)-2%2C3-butanediol to (3R)-acetoin%2C oxidation of meso-butanediol to (3S)-acetoin%2C and reduction of acetoin%3B enhances use of 2%2C3-butanediol as an aerobic carbon source;experiment=EXISTENCE:direct assay:GO:0000721 (R%2CR)-butanediol dehydrogenase activity [PMID:10938079],EXISTENCE:direct assay:GO:0005737 cytoplasm [PMID:11914276|PMID:14562095],EXISTENCE:mutant phenotype:GO:0006066 alcohol metabolic process [PMID:10938079],EXISTENCE:mutant phenotype:GO:0034079 butanediol biosynthetic process [PMID:19966022];gbkey=CDS;gene=BDH1;locus_tag=YAL060W;product=(R%2CR)-butanediol dehydrogenase;protein_id=NP_009341.2
Chr01 RefSeq gene 36509 37147 . + . ID=gene-YAL059W;Dbxref=GeneID:851240;Name=ECM1;end_range=37147,.;gbkey=Gene;gene=ECM1;gene_biotype=protein_coding;locus_tag=YAL059W;partial=true;start_range=.,36509
Chr01 RefSeq mRNA 36509 37147 . + . ID=rna-NM_001178201.2;Parent=gene-YAL059W;Dbxref=GeneID:851240,Genbank:NM_001178201.2;Name=NM_001178201.2;end_range=37147,.;gbkey=mRNA;gene=ECM1;locus_tag=YAL059W;partial=true;product=Ecm1p;start_range=.,36509;transcript_id=NM_001178201.2
Chr01 RefSeq exon 36509 37147 . + . ID=exon-NM_001178201.2-1;Parent=rna-NM_001178201.2;Dbxref=GeneID:851240,Genbank:NM_001178201.2;end_range=37147,.;gbkey=mRNA;gene=ECM1;locus_tag=YAL059W;partial=true;product=Ecm1p;start_range=.,36509;transcript_id=NM_001178201.2
Chr01 RefSeq CDS 36509 37147 . + 0 ID=cds-NP_009342.2;Parent=rna-NM_001178201.2;Dbxref=SGD:S000000055,GeneID:851240,Genbank:NP_009342.2;Name=NP_009342.2;Note=Pre-ribosomal factor involved in 60S ribosomal protein subunit export%3B associates with the pre-60S particle%3B shuttles between the nucleus and cytoplasm;experiment=EXISTENCE:direct assay:GO:0005634 nucleus [PMID:11583615|PMID:14562095],EXISTENCE:direct assay:GO:0005730 nucleolus [PMID:11583615],EXISTENCE:direct assay:GO:0030687 preribosome%2C large subunit precursor [PMID:20348449],EXISTENCE:genetic interaction:GO:0000055 ribosomal large subunit export from nucleus [PMID:11583615|PMID:20348449];gbkey=CDS;gene=ECM1;locus_tag=YAL059W;product=Ecm1p;protein_id=NP_009342.2
Chr01 RefSeq gene 37464 38972 . + . ID=gene-YAL058W;Dbxref=GeneID:851241;Name=CNE1;end_range=38972,.;gbkey=Gene;gene=CNE1;gene_biotype=protein_coding;gene_synonym=FUN48;locus_tag=YAL058W;partial=true;start_range=.,37464
Chr01 RefSeq mRNA 37464 38972 . + . ID=rna-NM_001178200.1;Parent=gene-YAL058W;Dbxref=GeneID:851241,Genbank:NM_001178200.1;Name=NM_001178200.1;end_range=38972,.;gbkey=mRNA;gene=CNE1;locus_tag=YAL058W;partial=true;product=calnexin;start_range=.,37464;transcript_id=NM_001178200.1
Chr01 RefSeq exon 37464 38972 . + . ID=exon-NM_001178200.1-1;Parent=rna-NM_001178200.1;Dbxref=GeneID:851241,Genbank:NM_001178200.1;end_range=38972,.;gbkey=mRNA;gene=CNE1;locus_tag=YAL058W;partial=true;product=calnexin;start_range=.,37464;transcript_id=NM_001178200.1
Chr01 RefSeq CDS 37464 38972 . + 0 ID=cds-NP_009343.1;Parent=rna-NM_001178200.1;Dbxref=SGD:S000000054,GeneID:851241,Genbank:NP_009343.1;Name=NP_009343.1;Note=Calnexin%3B integral membrane ER chaperone involved in folding and quality control of glycoproteins%3B chaperone activity is inhibited by Mpd1p%2C with which Cne1p interacts%3B 24%25 identical to mammalian calnexin%3B Ca+ binding not yet shown in yeast;experiment=EXISTENCE:direct assay:GO:0005783 endoplasmic reticulum [PMID:26928762],EXISTENCE:direct assay:GO:0030176 integral component of endoplasmic reticulum membrane [PMID:7814381],EXISTENCE:direct assay:GO:0051082 unfolded protein binding [PMID:16002399],EXISTENCE:mutant phenotype:GO:0006457 protein folding [PMID:15173200],EXISTENCE:mutant phenotype:GO:0030433 ubiquitin-dependent ERAD pathway [PMID:7814381],EXISTENCE:mutant phenotype:GO:0051082 unfolded protein binding [PMID:15173200],EXISTENCE:physical interaction:GO:0005515 protein binding [PMID:16002399];gbkey=CDS;gene=CNE1;locus_tag=YAL058W;product=calnexin;protein_id=NP_009343.1
Chr01 RefSeq gene 39259 41901 . + . ID=gene-YAL056W;Dbxref=GeneID:851243;Name=GPB2;end_range=41901,.;gbkey=Gene;gene=GPB2;gene_biotype=protein_coding;gene_synonym=KRH1;locus_tag=YAL056W;partial=true;start_range=.,39259
Chr01 RefSeq mRNA 39259 41901 . + . ID=rna-NM_001178199.2;Parent=gene-YAL056W;Dbxref=GeneID:851243,Genbank:NM_001178199.2;Name=NM_001178199.2;end_range=41901,.;gbkey=mRNA;gene=GPB2;locus_tag=YAL056W;partial=true;product=Gpb2p;start_range=.,39259;transcript_id=NM_001178199.2
Chr01 RefSeq exon 39259 41901 . + . ID=exon-NM_001178199.2-1;Parent=rna-NM_001178199.2;Dbxref=GeneID:851243,Genbank:NM_001178199.2;end_range=41901,.;gbkey=mRNA;gene=GPB2;locus_tag=YAL056W;partial=true;product=Gpb2p;start_range=.,39259;transcript_id=NM_001178199.2
Chr01 RefSeq CDS 39259 41901 . + 0 ID=cds-NP_009345.3;Parent=rna-NM_001178199.2;Dbxref=SGD:S000000052,GeneID:851243,Genbank:NP_009345.3;Name=NP_009345.3;Note=Multistep regulator of cAMP-PKA signaling%3B inhibits PKA downstream of Gpa2p and Cyr1p%2C thereby increasing cAMP dependency%3B inhibits Ras activity through direct interactions with Ira1p/2p%3B regulated by G-alpha protein Gpa2p%3B GPB2 has a paralog%2C GPB1%2C that arose from the whole genome duplication;experiment=EXISTENCE:direct assay:GO:0005737 cytoplasm [PMID:14562095],EXISTENCE:direct assay:GO:0005739 mitochondrion [PMID:14562095],EXISTENCE:direct assay:GO:0005886 plasma membrane [PMID:16030250],EXISTENCE:genetic interaction:GO:0001403 invasive growth in response to glucose limitation [PMID:12150916],EXISTENCE:genetic interaction:GO:0004862 cAMP-dependent protein kinase inhibitor activity [PMID:16278446|PMID:16924114],EXISTENCE:genetic interaction:GO:0007124 pseudohyphal growth [PMID:12150916],EXISTENCE:genetic interaction:GO:0010255 glucose mediated signaling pathway [PMID:12150916],EXISTENCE:genetic interaction:GO:0046580 negative regulation of Ras protein signal transduction [PMID:16793550],EXISTENCE:mutant phenotype:GO:0001403 invasive growth in response to glucose limitation [PMID:12150916],EXISTENCE:mutant phenotype:GO:0007124 pseudohyphal growth [PMID:12150916],EXISTENCE:mutant phenotype:GO:0010255 glucose mediated signaling pathway [PMID:12150916],EXISTENCE:mutant phenotype:GO:0030437 ascospore formation [PMID:12586695],EXISTENCE:mutant phenotype:GO:0045944 positive regulation of transcription by RNA polymerase II [PMID:12586695],EXISTENCE:physical interaction:GO:0032794 GTPase activating protein binding [PMID:16793550];gbkey=CDS;gene=GPB2;locus_tag=YAL056W;product=Gpb2p;protein_id=NP_009345.3
Chr01 RefSeq origin_of_replication 41992 42151 . + . ID=id-Chr01:41992..42151;Dbxref=SGD:S000121254;Note=ARS105%3B Autonomously Replicating Sequence;gbkey=rep_origin
Chr01 RefSeq gene 42177 42719 . + . ID=gene-YAL055W;Dbxref=GeneID:851244;Name=PEX22;end_range=42719,.;gbkey=Gene;gene=PEX22;gene_biotype=protein_coding;gene_synonym=YAF5;locus_tag=YAL055W;partial=true;start_range=.,42177
Chr01 RefSeq mRNA 42177 42719 . + . ID=rna-NM_001178198.1;Parent=gene-YAL055W;Dbxref=GeneID:851244,Genbank:NM_001178198.1;Name=NM_001178198.1;end_range=42719,.;gbkey=mRNA;gene=PEX22;locus_tag=YAL055W;partial=true;product=ubiquitin-protein transferase activating protein PEX22;start_range=.,42177;transcript_id=NM_001178198.1
Chr01 RefSeq exon 42177 42719 . + . ID=exon-NM_001178198.1-1;Parent=rna-NM_001178198.1;Dbxref=GeneID:851244,Genbank:NM_001178198.1;end_range=42719,.;gbkey=mRNA;gene=PEX22;locus_tag=YAL055W;partial=true;product=ubiquitin-protein transferase activating protein PEX22;start_range=.,42177;transcript_id=NM_001178198.1
Chr01 RefSeq CDS 42177 42719 . + 0 ID=cds-NP_009346.1;Parent=rna-NM_001178198.1;Dbxref=SGD:S000000051,GeneID:851244,Genbank:NP_009346.1;Name=NP_009346.1;Note=Putative peroxisomal membrane protein%3B required for import of peroxisomal proteins%3B functionally complements a Pichia pastoris pex22 mutation;experiment=EXISTENCE:direct assay:GO:0005737 cytoplasm [PMID:24390141],EXISTENCE:direct assay:GO:0031398 positive regulation of protein ubiquitination [PMID:25162638],EXISTENCE:direct assay:GO:0097027 ubiquitin-protein transferase activator activity [PMID:22085930],EXISTENCE:direct assay:GO:1902499 positive regulation of protein autoubiquitination [PMID:25162638],EXISTENCE:mutant phenotype:GO:0016562 protein import into peroxisome matrix%2C receptor recycling [PMID:17452527];gbkey=CDS;gene=PEX22;locus_tag=YAL055W;product=ubiquitin-protein transferase activating protein PEX22;protein_id=NP_009346.1
Chr01 RefSeq gene 42881 45022 . - . ID=gene-YAL054C;Dbxref=GeneID:851245;Name=ACS1;end_range=45022,.;gbkey=Gene;gene=ACS1;gene_biotype=protein_coding;gene_synonym=FUN44;locus_tag=YAL054C;partial=true;start_range=.,42881
Chr01 RefSeq mRNA 42881 45022 . - . ID=rna-NM_001178197.1;Parent=gene-YAL054C;Dbxref=GeneID:851245,Genbank:NM_001178197.1;Name=NM_001178197.1;end_range=45022,.;gbkey=mRNA;gene=ACS1;locus_tag=YAL054C;partial=true;product=acetate--CoA ligase 1;start_range=.,42881;transcript_id=NM_001178197.1
Chr01 RefSeq exon 42881 45022 . - . ID=exon-NM_001178197.1-1;Parent=rna-NM_001178197.1;Dbxref=GeneID:851245,Genbank:NM_001178197.1;end_range=45022,.;gbkey=mRNA;gene=ACS1;locus_tag=YAL054C;partial=true;product=acetate--CoA ligase 1;start_range=.,42881;transcript_id=NM_001178197.1
Chr01 RefSeq CDS 42881 45022 . - 0 ID=cds-NP_009347.1;Parent=rna-NM_001178197.1;Dbxref=SGD:S000000050,GeneID:851245,Genbank:NP_009347.1;Name=NP_009347.1;Note=Acetyl-coA synthetase isoform%3B along with Acs2p%2C acetyl-coA synthetase isoform is the nuclear source of acetyl-coA for histone acetylation%3B expressed during growth on nonfermentable carbon sources and under aerobic conditions;experiment=EXISTENCE:direct assay:GO:0003987 acetate-CoA ligase activity [PMID:8910545],EXISTENCE:direct assay:GO:0005739 mitochondrion [PMID:14576278|PMID:16823961],EXISTENCE:direct assay:GO:0005829 cytosol [PMID:9711835],EXISTENCE:direct assay:GO:0006085 acetyl-CoA biosynthetic process [PMID:8910545],EXISTENCE:direct assay:GO:0016880 acid-ammonia (or amide) ligase activity [PMID:18305111],EXISTENCE:genetic interaction:GO:0016573 histone acetylation [PMID:16857587],EXISTENCE:mutant phenotype:GO:0019654 acetate fermentation [PMID:1363452];gbkey=CDS;gene=ACS1;locus_tag=YAL054C;product=acetate--CoA ligase 1;protein_id=NP_009347.1
Chr01 RefSeq gene 45899 48250 . + . ID=gene-YAL053W;Dbxref=GeneID:851246;Name=FLC2;end_range=48250,.;gbkey=Gene;gene=FLC2;gene_biotype=protein_coding;locus_tag=YAL053W;partial=true;start_range=.,45899
Chr01 RefSeq mRNA 45899 48250 . + . ID=rna-NM_001178196.2;Parent=gene-YAL053W;Dbxref=GeneID:851246,Genbank:NM_001178196.2;Name=NM_001178196.2;end_range=48250,.;gbkey=mRNA;gene=FLC2;locus_tag=YAL053W;partial=true;product=flavin adenine dinucleotide transporter FLC2;start_range=.,45899;transcript_id=NM_001178196.2
Chr01 RefSeq exon 45899 48250 . + . ID=exon-NM_001178196.2-1;Parent=rna-NM_001178196.2;Dbxref=GeneID:851246,Genbank:NM_001178196.2;end_range=48250,.;gbkey=mRNA;gene=FLC2;locus_tag=YAL053W;partial=true;product=flavin adenine dinucleotide transporter FLC2;start_range=.,45899;transcript_id=NM_001178196.2
Chr01 RefSeq CDS 45899 48250 . + 0 ID=cds-NP_009348.2;Parent=rna-NM_001178196.2;Dbxref=SGD:S000000049,GeneID:851246,Genbank:NP_009348.2;Name=NP_009348.2;Note=Putative calcium channel involved in calcium release under hypotonic stress%3B required for uptake of FAD into endoplasmic reticulum%3B involved in cell wall maintenance%3B FLC2 has a paralog%2C YOR365C%2C that arose from the whole genome duplication;experiment=EXISTENCE:direct assay:GO:0005737 cytoplasm [PMID:14562095],EXISTENCE:direct assay:GO:0005783 endoplasmic reticulum [PMID:16717099],EXISTENCE:genetic interaction:GO:0030148 sphingolipid biosynthetic process [PMID:27462707],EXISTENCE:mutant phenotype:GO:0006457 protein folding [PMID:16717099],EXISTENCE:mutant phenotype:GO:0009272 fungal-type cell wall biogenesis [PMID:16717099],EXISTENCE:mutant phenotype:GO:0015230 FAD transmembrane transporter activity [PMID:16717099],EXISTENCE:mutant phenotype:GO:0015883 FAD transport [PMID:16717099],EXISTENCE:mutant phenotype:GO:0055074 calcium ion homeostasis [PMID:25573187],EXISTENCE:mutant phenotype:GO:0055085 transmembrane transport [PMID:16717099],EXISTENCE:mutant phenotype:GO:0071476 cellular hypotonic response [PMID:25573187];gbkey=CDS;gene=FLC2;locus_tag=YAL053W;product=flavin adenine dinucleotide transporter FLC2;protein_id=NP_009348.2
Chr01 RefSeq gene 48564 51707 . + . ID=gene-YAL051W;Dbxref=GeneID:851247;Name=OAF1;end_range=51707,.;gbkey=Gene;gene=OAF1;gene_biotype=protein_coding;gene_synonym=YAF1;locus_tag=YAL051W;partial=true;start_range=.,48564
Chr01 RefSeq mRNA 48564 51707 . + . ID=rna-NM_001178195.2;Parent=gene-YAL051W;Dbxref=GeneID:851247,Genbank:NM_001178195.2;Name=NM_001178195.2;end_range=51707,.;gbkey=mRNA;gene=OAF1;locus_tag=YAL051W;partial=true;product=oleate-activated transcription factor OAF1;start_range=.,48564;transcript_id=NM_001178195.2
Chr01 RefSeq exon 48564 51707 . + . ID=exon-NM_001178195.2-1;Parent=rna-NM_001178195.2;Dbxref=GeneID:851247,Genbank:NM_001178195.2;end_range=51707,.;gbkey=mRNA;gene=OAF1;locus_tag=YAL051W;partial=true;product=oleate-activated transcription factor OAF1;start_range=.,48564;transcript_id=NM_001178195.2
Chr01 RefSeq CDS 48564 51707 . + 0 ID=cds-NP_009349.3;Parent=rna-NM_001178195.2;Dbxref=SGD:S000000048,GeneID:851247,Genbank:NP_009349.3;Name=NP_009349.3;Note=Oleate-activated transcription factor%3B subunit of a heterodimeric complex with Pip2p%2C which binds to oleate-response elements (ORE) in the promoter of genes involved in beta-oxidation of fatty acids%2C peroxisome organization and biogenesis%2C activating transcription in the presence of oleate%3B regulates chromatin silencing at telomeres%3B involved in diauxic shift%3B OAF1 has a paralog%2C PIP2%2C that arose from the whole genome duplication;experiment=EXISTENCE:direct assay:GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding [PMID:9288897],EXISTENCE:direct assay:GO:0001228 DNA-binding transcription activator activity%2C RNA polymerase II-specific [PMID:10428786],EXISTENCE:direct assay:GO:0043565 sequence-specific DNA binding [PMID:19111667|PMID:19158363],EXISTENCE:direct assay:GO:0089716 Pip2-Oaf1 complex [PMID:9288897],EXISTENCE:genetic interaction:GO:0061429 positive regulation of transcription from RNA polymerase II promoter by oleic acid [PMID:9288897],EXISTENCE:mutant phenotype:GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding [PMID:9288897],EXISTENCE:mutant phenotype:GO:0001228 DNA-binding transcription activator activity%2C RNA polymerase II-specific [PMID:8972187|PMID:10428786],EXISTENCE:mutant phenotype:GO:0031940 positive regulation of chromatin silencing at telomere [PMID:21206489],EXISTENCE:mutant phenotype:GO:0032000 positive regulation of fatty acid beta-oxidation [PMID:8972187],EXISTENCE:mutant phenotype:GO:0045944 positive regulation of transcription by RNA polymerase II [PMID:8972187],EXISTENCE:mutant phenotype:GO:0061429 positive regulation of transcription from RNA polymerase II promoter by oleic acid [PMID:9288897],EXISTENCE:physical interaction:GO:0089716 Pip2-Oaf1 complex [PMID:8972187];gbkey=CDS;gene=OAF1;locus_tag=YAL051W;product=oleate-activated transcription factor OAF1;protein_id=NP_009349.3
Chr01 RefSeq gene 51855 52595 . - . ID=gene-YAL049C;Dbxref=GeneID:851248;Name=AIM2;end_range=52595,.;gbkey=Gene;gene=AIM2;gene_biotype=protein_coding;locus_tag=YAL049C;partial=true;start_range=.,51855
Chr01 RefSeq mRNA 51855 52595 . - . ID=rna-NM_001178194.1;Parent=gene-YAL049C;Dbxref=GeneID:851248,Genbank:NM_001178194.1;Name=NM_001178194.1;end_range=52595,.;gbkey=mRNA;gene=AIM2;locus_tag=YAL049C;partial=true;product=protein AIM2;start_range=.,51855;transcript_id=NM_001178194.1
Chr01 RefSeq exon 51855 52595 . - . ID=exon-NM_001178194.1-1;Parent=rna-NM_001178194.1;Dbxref=GeneID:851248,Genbank:NM_001178194.1;end_range=52595,.;gbkey=mRNA;gene=AIM2;locus_tag=YAL049C;partial=true;product=protein AIM2;start_range=.,51855;transcript_id=NM_001178194.1
Chr01 RefSeq CDS 51855 52595 . - 0 ID=cds-NP_009350.1;Parent=rna-NM_001178194.1;Dbxref=SGD:S000000047,GeneID:851248,Genbank:NP_009350.1;Name=NP_009350.1;Note=Cytoplasmic protein involved in mitochondrial function or organization%3B null mutant displays reduced frequency of mitochondrial genome loss%3B potential Hsp82p interactor;experiment=EXISTENCE:direct assay:GO:0005737 cytoplasm [PMID:14562095];gbkey=CDS;gene=AIM2;locus_tag=YAL049C;product=protein AIM2;protein_id=NP_009350.1
Chr01 RefSeq gene 52801 54789 . - . ID=gene-YAL048C;Dbxref=GeneID:851249;Name=GEM1;end_range=54789,.;gbkey=Gene;gene=GEM1;gene_biotype=protein_coding;gene_synonym=GON1;locus_tag=YAL048C;partial=true;start_range=.,52801
Chr01 RefSeq mRNA 52801 54789 . - . ID=rna-NM_001178193.1;Parent=gene-YAL048C;Dbxref=GeneID:851249,Genbank:NM_001178193.1;Name=NM_001178193.1;end_range=54789,.;gbkey=mRNA;gene=GEM1;locus_tag=YAL048C;partial=true;product=ERMES complex Ca(2+)-binding regulatory GTPase GEM1;start_range=.,52801;transcript_id=NM_001178193.1
Chr01 RefSeq exon 52801 54789 . - . ID=exon-NM_001178193.1-1;Parent=rna-NM_001178193.1;Dbxref=GeneID:851249,Genbank:NM_001178193.1;end_range=54789,.;gbkey=mRNA;gene=GEM1;locus_tag=YAL048C;partial=true;product=ERMES complex Ca(2+)-binding regulatory GTPase GEM1;start_range=.,52801;transcript_id=NM_001178193.1
Chr01 RefSeq CDS 52801 54789 . - 0 ID=cds-NP_009351.1;Parent=rna-NM_001178193.1;Dbxref=SGD:S000000046,GeneID:851249,Genbank:NP_009351.1;Name=NP_009351.1;Note=Outer mitochondrial membrane GTPase%2C subunit of the ERMES complex%3B potential regulatory subunit of the ERMES complex that links the ER to mitochondria and may promote inter-organellar calcium and phospholipid exchange as well as coordinating mitochondrial DNA replication and growth%3B cells lacking Gem1p contain collapsed%2C globular%2C or grape-like mitochondria%3B ortholog of metazoan Miro GTPases;experiment=EXISTENCE:direct assay:GO:0005509 calcium ion binding [PMID:21036903],EXISTENCE:direct assay:GO:0005739 mitochondrion [PMID:16823961],EXISTENCE:direct assay:GO:0005741 mitochondrial outer membrane [PMID:15479738|PMID:16407407],EXISTENCE:genetic interaction:GO:0000001 mitochondrion inheritance [PMID:18245340],EXISTENCE:genetic interaction:GO:0055091 phospholipid homeostasis [PMID:21825164],EXISTENCE:mutant phenotype:GO:0000001 mitochondrion inheritance [PMID:18245340],EXISTENCE:mutant phenotype:GO:0003924 GTPase activity [PMID:15479738],EXISTENCE:mutant phenotype:GO:0010821 regulation of mitochondrion organization [PMID:21825164],EXISTENCE:mutant phenotype:GO:0015886 heme transport [PMID:32265272],EXISTENCE:mutant phenotype:GO:1990456 mitochondrion-endoplasmic reticulum membrane tethering [PMID:21825164|PMID:23682313],EXISTENCE:physical interaction:GO:0032865 ERMES complex [PMID:21825164|PMID:21945531];gbkey=CDS;gene=GEM1;locus_tag=YAL048C;product=ERMES complex Ca(2+)-binding regulatory GTPase GEM1;protein_id=NP_009351.1
Chr01 RefSeq gene 54989 56857 . - . ID=gene-YAL047C;Dbxref=GeneID:851250;Name=SPC72;end_range=56857,.;gbkey=Gene;gene=SPC72;gene_biotype=protein_coding;gene_synonym=LDB4;locus_tag=YAL047C;partial=true;start_range=.,54989
Chr01 RefSeq mRNA 54989 56857 . - . ID=rna-NM_001178192.2;Parent=gene-YAL047C;Dbxref=GeneID:851250,Genbank:NM_001178192.2;Name=NM_001178192.2;end_range=56857,.;gbkey=mRNA;gene=SPC72;locus_tag=YAL047C;partial=true;product=gamma-tubulin complex subunit SPC72;start_range=.,54989;transcript_id=NM_001178192.2
Chr01 RefSeq exon 54989 56857 . - . ID=exon-NM_001178192.2-1;Parent=rna-NM_001178192.2;Dbxref=GeneID:851250,Genbank:NM_001178192.2;end_range=56857,.;gbkey=mRNA;gene=SPC72;locus_tag=YAL047C;partial=true;product=gamma-tubulin complex subunit SPC72;start_range=.,54989;transcript_id=NM_001178192.2
Chr01 RefSeq CDS 54989 56857 . - 0 ID=cds-NP_009352.2;Parent=rna-NM_001178192.2;Dbxref=SGD:S000000045,GeneID:851250,Genbank:NP_009352.2;Name=NP_009352.2;Note=Gamma-tubulin small complex (gamma-TuSC) receptor%3B recruits the gamma-TuSC complex to the cytoplasmic side of the SPB%2C connecting nuclear microtubules to the SPB%3B involved in astral microtubule formation%2C stabilization%2C and with Stu2p%2C anchoring astral MTs at the cytoplasmic face of the SPB%2C and regulating plus-end MT dynamics%3B regulated by Cdc5 kinase;experiment=EXISTENCE:direct assay:GO:0005816 spindle pole body [PMID:9382872],EXISTENCE:direct assay:GO:0005824 outer plaque of spindle pole body [PMID:9670012],EXISTENCE:direct assay:GO:0005876 spindle microtubule [PMID:9382872],EXISTENCE:direct assay:GO:0044877 protein-containing complex binding [PMID:12970190|PMID:9670012],EXISTENCE:direct assay:GO:0051010 microtubule plus-end binding [PMID:12970190],EXISTENCE:direct assay:GO:0061499 outer plaque of mitotic spindle pole body [PMID:9585415],EXISTENCE:direct assay:GO:0099609 microtubule lateral binding [PMID:9382872],EXISTENCE:direct assay:GO:1905721 mitotic spindle astral microtubule end [PMID:12970190],EXISTENCE:genetic interaction:GO:0031578 mitotic spindle orientation checkpoint signaling [PMID:17967947],EXISTENCE:mutant phenotype:GO:0007020 microtubule nucleation [PMID:18573877],EXISTENCE:mutant phenotype:GO:0030953 astral microtubule organization [PMID:12970190],EXISTENCE:mutant phenotype:GO:0031122 cytoplasmic microtubule organization [PMID:9606209],EXISTENCE:mutant phenotype:GO:1990734 astral microtubule anchoring at mitotic spindle pole body [PMID:12970190],EXISTENCE:physical interaction:GO:0031578 mitotic spindle orientation checkpoint signaling [PMID:17967947],EXISTENCE:physical interaction:GO:0110121 gamma-tubulin complex localization to cytoplasmic side of mitotic spindle pole body [PMID:9670012];gbkey=CDS;gene=SPC72;locus_tag=YAL047C;product=gamma-tubulin complex subunit SPC72;protein_id=NP_009352.2
Chr01 RefSeq gene 57029 57385 . - . ID=gene-YAL046C;Dbxref=GeneID:851251;Name=BOL3;end_range=57385,.;gbkey=Gene;gene=BOL3;gene_biotype=protein_coding;gene_synonym=AIM1;locus_tag=YAL046C;partial=true;start_range=.,57029
Chr01 RefSeq mRNA 57029 57385 . - . ID=rna-NM_001178191.1;Parent=gene-YAL046C;Dbxref=GeneID:851251,Genbank:NM_001178191.1;Name=NM_001178191.1;end_range=57385,.;gbkey=mRNA;gene=BOL3;locus_tag=YAL046C;partial=true;product=Bol3p;start_range=.,57029;transcript_id=NM_001178191.1
Chr01 RefSeq exon 57029 57385 . - . ID=exon-NM_001178191.1-1;Parent=rna-NM_001178191.1;Dbxref=GeneID:851251,Genbank:NM_001178191.1;end_range=57385,.;gbkey=mRNA;gene=BOL3;locus_tag=YAL046C;partial=true;product=Bol3p;start_range=.,57029;transcript_id=NM_001178191.1
Chr01 RefSeq CDS 57029 57385 . - 0 ID=cds-NP_009353.1;Parent=rna-NM_001178191.1;Dbxref=SGD:S000000044,GeneID:851251,Genbank:NP_009353.1;Name=NP_009353.1;Note=Protein involved in Fe-S cluster transfer to mitochondrial clients%3B protects [4Fe-4S] clusters from damage due to oxidative stress by acting along with Nfu1p at a late step in the transfer of [4Fe-4S] clusters from the ISA complex to mitochondrial client proteins like lipoate synthase and succinate dehydrogenase%3B sequence similarity to human BOLA family member%2C BOLA3%2C mutations of which are associated with Multiple Mitochondria Dysfunctions Syndrome (MMDS2);experiment=EXISTENCE:direct assay:GO:0005759 mitochondrial matrix [PMID:27532772],EXISTENCE:genetic interaction:GO:0106035 protein maturation by [4Fe-4S] cluster transfer [PMID:27532772|PMID:27532773],EXISTENCE:mutant phenotype:GO:0106035 protein maturation by [4Fe-4S] cluster transfer [PMID:27532772],EXISTENCE:physical interaction:GO:0106035 protein maturation by [4Fe-4S] cluster transfer [PMID:27532773];gbkey=CDS;gene=BOL3;locus_tag=YAL046C;product=Bol3p;protein_id=NP_009353.1
Chr01 RefSeq gene 57518 57850 . + . ID=gene-YAL044W-A;Dbxref=GeneID:851252;Name=BOL1;end_range=57850,.;gbkey=Gene;gene=BOL1;gene_biotype=protein_coding;locus_tag=YAL044W-A;partial=true;start_range=.,57518
Chr01 RefSeq mRNA 57518 57850 . + . ID=rna-NM_001184453.1;Parent=gene-YAL044W-A;Dbxref=GeneID:851252,Genbank:NM_001184453.1;Name=NM_001184453.1;end_range=57850,.;gbkey=mRNA;gene=BOL1;locus_tag=YAL044W-A;partial=true;product=Bol1p;start_range=.,57518;transcript_id=NM_001184453.1
Chr01 RefSeq exon 57518 57850 . + . ID=exon-NM_001184453.1-1;Parent=rna-NM_001184453.1;Dbxref=GeneID:851252,Genbank:NM_001184453.1;end_range=57850,.;gbkey=mRNA;gene=BOL1;locus_tag=YAL044W-A;partial=true;product=Bol1p;start_range=.,57518;transcript_id=NM_001184453.1
Chr01 RefSeq CDS 57518 57850 . + 0 ID=cds-NP_075206.1;Parent=rna-NM_001184453.1;Dbxref=SGD:S000007586,GeneID:851252,Genbank:NP_075206.1;Name=NP_075206.1;Note=Mitochondrial matrix protein involved in Fe-S cluster biogenesis%3B facilitates [4Fe-2S] cluster inception into mitochondrial proteins such as lipoate synthase and succinate dehydrogenase%3B interacts and may function with Grx5p at an early step in Fe-S cluster biosynthesis%3B forms dimeric complexes with Grx5p and Nfu1p that alter the stability of shared Fe/S clusters%3B sequence similarity to human BOLA family member%2C BOLA1 and S. pombe uvi31%2C a putative DNA repair protein;experiment=EXISTENCE:direct assay:GO:0005759 mitochondrial matrix [PMID:27532772],EXISTENCE:genetic interaction:GO:0044572 [4Fe-4S] cluster assembly [PMID:27532773],EXISTENCE:genetic interaction:GO:0106035 protein maturation by [4Fe-4S] cluster transfer [PMID:27532772],EXISTENCE:mutant phenotype:GO:0044572 [4Fe-4S] cluster assembly [PMID:27532773],EXISTENCE:physical interaction:GO:0044572 [4Fe-4S] cluster assembly [PMID:27532773];gbkey=CDS;gene=BOL1;locus_tag=YAL044W-A;product=Bol1p;protein_id=NP_075206.1
Chr01 RefSeq gene 57950 58462 . - . ID=gene-YAL044C;Dbxref=GeneID:851254;Name=GCV3;end_range=58462,.;gbkey=Gene;gene=GCV3;gene_biotype=protein_coding;locus_tag=YAL044C;partial=true;start_range=.,57950
Chr01 RefSeq mRNA 57950 58462 . - . ID=rna-NM_001178189.1;Parent=gene-YAL044C;Dbxref=GeneID:851254,Genbank:NM_001178189.1;Name=NM_001178189.1;end_range=58462,.;gbkey=mRNA;gene=GCV3;locus_tag=YAL044C;partial=true;product=glycine decarboxylase subunit H;start_range=.,57950;transcript_id=NM_001178189.1
Chr01 RefSeq exon 57950 58462 . - . ID=exon-NM_001178189.1-1;Parent=rna-NM_001178189.1;Dbxref=GeneID:851254,Genbank:NM_001178189.1;end_range=58462,.;gbkey=mRNA;gene=GCV3;locus_tag=YAL044C;partial=true;product=glycine decarboxylase subunit H;start_range=.,57950;transcript_id=NM_001178189.1
Chr01 RefSeq CDS 57950 58462 . - 0 ID=cds-NP_009355.3;Parent=rna-NM_001178189.1;Dbxref=SGD:S000000042,GeneID:851254,Genbank:NP_009355.3;Name=NP_009355.3;Note=H subunit of the mitochondrial glycine decarboxylase complex%3B glycine decarboxylase is required for the catabolism of glycine to 5%2C10-methylene-THF%3B also required for all protein lipoylation%3B expression is regulated by levels of 5%2C10-methylene-THF;experiment=EXISTENCE:direct assay:GO:0005739 mitochondrion [PMID:19570983|PMID:14576278|PMID:16823961|PMID:24769239],EXISTENCE:direct assay:GO:0031405 lipoic acid binding [PMID:32974306],EXISTENCE:genetic interaction:GO:0006730 one-carbon metabolic process [PMID:10871621],EXISTENCE:mutant phenotype:GO:0005960 glycine cleavage complex [PMID:9020168],EXISTENCE:mutant phenotype:GO:0006546 glycine catabolic process [PMID:9020168],EXISTENCE:mutant phenotype:GO:0009249 protein lipoylation [PMID:19570983];gbkey=CDS;gene=GCV3;locus_tag=YAL044C;product=glycine decarboxylase subunit H;protein_id=NP_009355.3
Chr01 RefSeq gene 58695 61052 . - . ID=gene-YAL043C;Dbxref=GeneID:851255;Name=PTA1;end_range=61052,.;gbkey=Gene;gene=PTA1;gene_biotype=protein_coding;gene_synonym=FUN39;locus_tag=YAL043C;partial=true;start_range=.,58695
Chr01 RefSeq mRNA 58695 61052 . - . ID=rna-NM_001178188.1;Parent=gene-YAL043C;Dbxref=GeneID:851255,Genbank:NM_001178188.1;Name=NM_001178188.1;end_range=61052,.;gbkey=mRNA;gene=PTA1;locus_tag=YAL043C;partial=true;product=RNA-processing protein PTA1;start_range=.,58695;transcript_id=NM_001178188.1
Chr01 RefSeq exon 58695 61052 . - . ID=exon-NM_001178188.1-1;Parent=rna-NM_001178188.1;Dbxref=GeneID:851255,Genbank:NM_001178188.1;end_range=61052,.;gbkey=mRNA;gene=PTA1;locus_tag=YAL043C;partial=true;product=RNA-processing protein PTA1;start_range=.,58695;transcript_id=NM_001178188.1
Chr01 RefSeq CDS 58695 61052 . - 0 ID=cds-NP_009356.1;Parent=rna-NM_001178188.1;Dbxref=SGD:S000000041,GeneID:851255,Genbank:NP_009356.1;Name=NP_009356.1;Note=Subunit of holo-CPF%3B holo-CPF is a multiprotein complex and functional homolog of mammalian CPSF%2C required for the cleavage and polyadenylation of mRNA and snoRNA 3' ends%3B involved in pre-tRNA processing%3B binds to the phosphorylated CTD of RNAPII;experiment=EXISTENCE:curator inference:GO:0003723 RNA binding [PMID:10523662],EXISTENCE:direct assay:GO:0005847 mRNA cleavage and polyadenylation specificity factor complex [PMID:10523662|PMID:12819204|PMID:9099738],EXISTENCE:mutant phenotype:GO:0006378 mRNA polyadenylation [PMID:10523662|PMID:9303317],EXISTENCE:mutant phenotype:GO:0008033 tRNA processing [PMID:1508188],EXISTENCE:mutant phenotype:GO:0098789 pre-mRNA cleavage required for polyadenylation [PMID:10523662],EXISTENCE:physical interaction:GO:0030846 termination of RNA polymerase II transcription%2C poly(A)-coupled [PMID:12819204];gbkey=CDS;gene=PTA1;locus_tag=YAL043C;product=RNA-processing protein PTA1;protein_id=NP_009356.1
Chr01 RefSeq gene 61316 62563 . + . ID=gene-YAL042W;Dbxref=GeneID:851256;Name=ERV46;end_range=62563,.;gbkey=Gene;gene=ERV46;gene_biotype=protein_coding;gene_synonym=FUN9;locus_tag=YAL042W;partial=true;start_range=.,61316
Chr01 RefSeq mRNA 61316 62563 . + . ID=rna-NM_001178187.1;Parent=gene-YAL042W;Dbxref=GeneID:851256,Genbank:NM_001178187.1;Name=NM_001178187.1;end_range=62563,.;gbkey=mRNA;gene=ERV46;locus_tag=YAL042W;partial=true;product=Erv46p;start_range=.,61316;transcript_id=NM_001178187.1
Chr01 RefSeq exon 61316 62563 . + . ID=exon-NM_001178187.1-1;Parent=rna-NM_001178187.1;Dbxref=GeneID:851256,Genbank:NM_001178187.1;end_range=62563,.;gbkey=mRNA;gene=ERV46;locus_tag=YAL042W;partial=true;product=Erv46p;start_range=.,61316;transcript_id=NM_001178187.1
Chr01 RefSeq CDS 61316 62563 . + 0 ID=cds-NP_009358.1;Parent=rna-NM_001178187.1;Dbxref=SGD:S000000040,GeneID:851256,Genbank:NP_009358.1;Name=NP_009358.1;Note=Protein localized to COPII-coated vesicles%3B forms a complex with Erv41p%3B involved in the membrane fusion stage of transport;experiment=EXISTENCE:direct assay:GO:0005783 endoplasmic reticulum [PMID:26928762],EXISTENCE:direct assay:GO:0030134 COPII-coated ER to Golgi transport vesicle [PMID:11157978],EXISTENCE:direct assay:GO:0030173 integral component of Golgi membrane [PMID:11157978],EXISTENCE:direct assay:GO:0030176 integral component of endoplasmic reticulum membrane [PMID:11157978],EXISTENCE:genetic interaction:GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport [PMID:11157978];gbkey=CDS;gene=ERV46;locus_tag=YAL042W;product=Erv46p;protein_id=NP_009358.1
Chr01 RefSeq gene 62840 65404 . + . ID=gene-YAL041W;Dbxref=GeneID:851190;Name=CDC24;end_range=65404,.;gbkey=Gene;gene=CDC24;gene_biotype=protein_coding;gene_synonym=CLS4;locus_tag=YAL041W;partial=true;start_range=.,62840
Chr01 RefSeq mRNA 62840 65404 . + . ID=rna-NM_001178186.1;Parent=gene-YAL041W;Dbxref=GeneID:851190,Genbank:NM_001178186.1;Name=NM_001178186.1;end_range=65404,.;gbkey=mRNA;gene=CDC24;locus_tag=YAL041W;partial=true;product=Rho family guanine nucleotide exchange factor CDC24;start_range=.,62840;transcript_id=NM_001178186.1
Chr01 RefSeq exon 62840 65404 . + . ID=exon-NM_001178186.1-1;Parent=rna-NM_001178186.1;Dbxref=GeneID:851190,Genbank:NM_001178186.1;end_range=65404,.;gbkey=mRNA;gene=CDC24;locus_tag=YAL041W;partial=true;product=Rho family guanine nucleotide exchange factor CDC24;start_range=.,62840;transcript_id=NM_001178186.1
Chr01 RefSeq CDS 62840 65404 . + 0 ID=cds-NP_009359.1;Parent=rna-NM_001178186.1;Dbxref=SGD:S000000039,GeneID:851190,Genbank:NP_009359.1;Name=NP_009359.1;Note=Guanine nucleotide exchange factor (GEF) for Cdc42p%3B required for polarity establishment and maintenance%2C and mutants have morphological defects in bud formation and shmooing%3B relocalizes from nucleus to cytoplasm upon DNA replication stress%3B thermosensitivity of the cdc24-4 mutant in the presence of sorbitol is functionally complemented by human CDC42;experiment=EXISTENCE:direct assay:GO:0000131 incipient cellular bud site [PMID:10655592],EXISTENCE:direct assay:GO:0005085 guanyl-nucleotide exchange factor activity [PMID:8300560],EXISTENCE:direct assay:GO:0005634 nucleus [PMID:10655592|PMID:22842922],EXISTENCE:direct assay:GO:0005737 cytoplasm [PMID:10655592|PMID:22842922],EXISTENCE:direct assay:GO:0005934 cellular bud tip [PMID:10655592],EXISTENCE:direct assay:GO:0005935 cellular bud neck [PMID:10087263],EXISTENCE:direct assay:GO:0043332 mating projection tip [PMID:10087263],EXISTENCE:direct assay:GO:0120171 Cdc24p-Far1p-Gbetagamma complex [PMID:10087263],EXISTENCE:genetic interaction:GO:0000750 pheromone-dependent signal transduction involved in conjugation with cellular fusion [PMID:7565673],EXISTENCE:mutant phenotype:GO:0000282 cellular bud site selection [PMID:7019215],EXISTENCE:mutant phenotype:GO:0000750 pheromone-dependent signal transduction involved in conjugation with cellular fusion [PMID:7565673],EXISTENCE:mutant phenotype:GO:0007096 regulation of exit from mitosis [PMID:12234925],EXISTENCE:mutant phenotype:GO:0031106 septin ring organization [PMID:16371506],EXISTENCE:mutant phenotype:GO:0043577 chemotropism [PMID:9428768],EXISTENCE:mutant phenotype:GO:0072697 protein localization to cell cortex [PMID:16325503],EXISTENCE:physical interaction:GO:0120171 Cdc24p-Far1p-Gbetagamma complex [PMID:10087263];gbkey=CDS;gene=CDC24;locus_tag=YAL041W;product=Rho family guanine nucleotide exchange factor CDC24;protein_id=NP_009359.1
Chr01 RefSeq gene 65778 67520 . - . ID=gene-YAL040C;Dbxref=GeneID:851191;Name=CLN3;end_range=67520,.;gbkey=Gene;gene=CLN3;gene_biotype=protein_coding;gene_synonym=DAF1,FUN10,WHI1;locus_tag=YAL040C;partial=true;start_range=.,65778
Chr01 RefSeq mRNA 65778 67520 . - . ID=rna-NM_001178185.1;Parent=gene-YAL040C;Dbxref=GeneID:851191,Genbank:NM_001178185.1;Name=NM_001178185.1;end_range=67520,.;gbkey=mRNA;gene=CLN3;locus_tag=YAL040C;partial=true;product=cyclin CLN3;start_range=.,65778;transcript_id=NM_001178185.1
Chr01 RefSeq exon 65778 67520 . - . ID=exon-NM_001178185.1-1;Parent=rna-NM_001178185.1;Dbxref=GeneID:851191,Genbank:NM_001178185.1;end_range=67520,.;gbkey=mRNA;gene=CLN3;locus_tag=YAL040C;partial=true;product=cyclin CLN3;start_range=.,65778;transcript_id=NM_001178185.1
Chr01 RefSeq CDS 65778 67520 . - 0 ID=cds-NP_009360.1;Parent=rna-NM_001178185.1;Dbxref=SGD:S000000038,GeneID:851191,Genbank:NP_009360.1;Name=NP_009360.1;Note=G1 cyclin involved in cell cycle progression%3B activates Cdc28p kinase to promote G1 to S phase transition%3B plays a role in regulating transcription of other G1 cyclins%2C CLN1 and CLN2%3B regulated by phosphorylation and proteolysis%3B acetyl-CoA induces CLN3 transcription in response to nutrient repletion to promote cell-cycle entry%3B cell cycle arrest phenotype of the cln1 cln2 cln3 triple null mutant is complemented by any of human cyclins CCNA2%2C CCNB1%2C CCNC%2C CCND1%2C or CCNE1;experiment=EXISTENCE:direct assay:GO:0005634 nucleus [PMID:10611233|PMID:11509671|PMID:11792824],EXISTENCE:direct assay:GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity [PMID:1316273],EXISTENCE:direct assay:GO:0042144 vacuole fusion%2C non-autophagic [PMID:14573462],EXISTENCE:genetic interaction:GO:0000083 regulation of transcription involved in G1/S transition of mitotic cell cycle [PMID:19823668],EXISTENCE:genetic interaction:GO:0007089 traversing start control point of mitotic cell cycle [PMID:2147225|PMID:2574633],EXISTENCE:mutant phenotype:GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity [PMID:1316273|PMID:8387915],EXISTENCE:mutant phenotype:GO:0000083 regulation of transcription involved in G1/S transition of mitotic cell cycle [PMID:19823668],EXISTENCE:mutant phenotype:GO:0005634 nucleus [PMID:11509671],EXISTENCE:mutant phenotype:GO:0007033 vacuole organization [PMID:14573462],EXISTENCE:mutant phenotype:GO:0007089 traversing start control point of mitotic cell cycle [PMID:2907481|PMID:3062366],EXISTENCE:mutant phenotype:GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity [PMID:1316273|PMID:8387915],EXISTENCE:mutant phenotype:GO:0042144 vacuole fusion%2C non-autophagic [PMID:14573462];gbkey=CDS;gene=CLN3;locus_tag=YAL040C;product=cyclin CLN3;protein_id=NP_009360.1
Chr01 RefSeq regulatory_region 67825 67836 . - . ID=id-Chr01:67825..67836;Note=Upstream open reading frame (uORF) in 5' untranslated region of CLN3 gene%2C regulate translation;gbkey=regulatory;regulatory_class=other
Chr01 RefSeq gene 68716 69525 . - . ID=gene-YAL039C;Dbxref=GeneID:851192;Name=CYC3;end_range=69525,.;gbkey=Gene;gene=CYC3;gene_biotype=protein_coding;locus_tag=YAL039C;partial=true;start_range=.,68716
Chr01 RefSeq mRNA 68716 69525 . - . ID=rna-NM_001178184.1;Parent=gene-YAL039C;Dbxref=GeneID:851192,Genbank:NM_001178184.1;Name=NM_001178184.1;end_range=69525,.;gbkey=mRNA;gene=CYC3;locus_tag=YAL039C;partial=true;product=holocytochrome c synthase CYC3;start_range=.,68716;transcript_id=NM_001178184.1
Chr01 RefSeq exon 68716 69525 . - . ID=exon-NM_001178184.1-1;Parent=rna-NM_001178184.1;Dbxref=GeneID:851192,Genbank:NM_001178184.1;end_range=69525,.;gbkey=mRNA;gene=CYC3;locus_tag=YAL039C;partial=true;product=holocytochrome c synthase CYC3;start_range=.,68716;transcript_id=NM_001178184.1
Chr01 RefSeq CDS 68716 69525 . - 0 ID=cds-NP_009361.1;Parent=rna-NM_001178184.1;Dbxref=SGD:S000000037,GeneID:851192,Genbank:NP_009361.1;Name=NP_009361.1;Note=Cytochrome c heme lyase (holocytochrome c synthase)%3B attaches heme to apo-cytochrome c (Cyc1p or Cyc7p) in mitochondrial intermembrane space%3B human homolog HCCS implicated in microphthalmia with linear skin defects (MLS)%2C and can complement yeast null mutant;experiment=EXISTENCE:direct assay:GO:0004408 holocytochrome-c synthase activity [PMID:3034577],EXISTENCE:direct assay:GO:0005739 mitochondrion [PMID:16823961|PMID:24769239],EXISTENCE:direct assay:GO:0005758 mitochondrial intermembrane space [PMID:1656231],EXISTENCE:direct assay:GO:0018063 cytochrome c-heme linkage [PMID:3034577];gbkey=CDS;gene=CYC3;locus_tag=YAL039C;product=holocytochrome c synthase CYC3;protein_id=NP_009361.1
Chr01 RefSeq origin_of_replication 70300 70469 . + . ID=id-Chr01:70300..70469;Dbxref=SGD:S000118318;Note=ARS106%3B Autonomously Replicating Sequence;gbkey=rep_origin
Chr01 RefSeq gene 71786 73288 . + . ID=gene-YAL038W;Dbxref=GeneID:851193;Name=CDC19;end_range=73288,.;gbkey=Gene;gene=CDC19;gene_biotype=protein_coding;gene_synonym=PYK1;locus_tag=YAL038W;partial=true;start_range=.,71786
Chr01 RefSeq mRNA 71786 73288 . + . ID=rna-NM_001178183.1;Parent=gene-YAL038W;Dbxref=GeneID:851193,Genbank:NM_001178183.1;Name=NM_001178183.1;end_range=73288,.;gbkey=mRNA;gene=CDC19;locus_tag=YAL038W;partial=true;product=pyruvate kinase CDC19;start_range=.,71786;transcript_id=NM_001178183.1
Chr01 RefSeq exon 71786 73288 . + . ID=exon-NM_001178183.1-1;Parent=rna-NM_001178183.1;Dbxref=GeneID:851193,Genbank:NM_001178183.1;end_range=73288,.;gbkey=mRNA;gene=CDC19;locus_tag=YAL038W;partial=true;product=pyruvate kinase CDC19;start_range=.,71786;transcript_id=NM_001178183.1
Chr01 RefSeq CDS 71786 73288 . + 0 ID=cds-NP_009362.1;Parent=rna-NM_001178183.1;Dbxref=SGD:S000000036,GeneID:851193,Genbank:NP_009362.1;Name=NP_009362.1;Note=Pyruvate kinase%3B functions as a homotetramer in glycolysis to convert phosphoenolpyruvate to pyruvate%2C the input for aerobic (TCA cycle) or anaerobic (glucose fermentation) respiration%3B regulated via allosteric activation by fructose bisphosphate%3B CDC19 has a paralog%2C PYK2%2C that arose from the whole genome duplication;experiment=EXISTENCE:direct assay:GO:0004743 pyruvate kinase activity [PMID:12063246],EXISTENCE:direct assay:GO:0005737 cytoplasm [PMID:14718557|PMID:27385335],EXISTENCE:direct assay:GO:0005886 plasma membrane [PMID:16622836],EXISTENCE:mutant phenotype:GO:0004743 pyruvate kinase activity [PMID:323230],EXISTENCE:mutant phenotype:GO:0006090 pyruvate metabolic process [PMID:323230],EXISTENCE:mutant phenotype:GO:0006096 glycolytic process [PMID:323230];gbkey=CDS;gene=CDC19;locus_tag=YAL038W;product=pyruvate kinase CDC19;protein_id=NP_009362.1
Chr01 RefSeq gene 73426 73518 . - . ID=gene-YAL037C-A;Dbxref=GeneID:1466428;Name=YAL037C-A;end_range=73518,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YAL037C-A;partial=true;start_range=.,73426
Chr01 RefSeq mRNA 73426 73518 . - . ID=rna-NM_001184629.1;Parent=gene-YAL037C-A;Dbxref=GeneID:1466428,Genbank:NM_001184629.1;Name=NM_001184629.1;end_range=73518,.;gbkey=mRNA;locus_tag=YAL037C-A;partial=true;product=uncharacterized protein;start_range=.,73426;transcript_id=NM_001184629.1
Chr01 RefSeq exon 73426 73518 . - . ID=exon-NM_001184629.1-1;Parent=rna-NM_001184629.1;Dbxref=GeneID:1466428,Genbank:NM_001184629.1;end_range=73518,.;gbkey=mRNA;locus_tag=YAL037C-A;partial=true;product=uncharacterized protein;start_range=.,73426;transcript_id=NM_001184629.1
Chr01 RefSeq CDS 73426 73518 . - 0 ID=cds-NP_878040.1;Parent=rna-NM_001184629.1;Dbxref=SGD:S000028732,GeneID:1466428,Genbank:NP_878040.1;Name=NP_878040.1;gbkey=CDS;locus_tag=YAL037C-A;product=uncharacterized protein;protein_id=NP_878040.1
Chr01 RefSeq gene 74020 74823 . + . ID=gene-YAL037W;Dbxref=GeneID:851194;Name=YAL037W;end_range=74823,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YAL037W;partial=true;start_range=.,74020
Chr01 RefSeq mRNA 74020 74823 . + . ID=rna-NM_001178182.1;Parent=gene-YAL037W;Dbxref=GeneID:851194,Genbank:NM_001178182.1;Name=NM_001178182.1;end_range=74823,.;gbkey=mRNA;locus_tag=YAL037W;partial=true;product=uncharacterized protein;start_range=.,74020;transcript_id=NM_001178182.1
Chr01 RefSeq exon 74020 74823 . + . ID=exon-NM_001178182.1-1;Parent=rna-NM_001178182.1;Dbxref=GeneID:851194,Genbank:NM_001178182.1;end_range=74823,.;gbkey=mRNA;locus_tag=YAL037W;partial=true;product=uncharacterized protein;start_range=.,74020;transcript_id=NM_001178182.1
Chr01 RefSeq CDS 74020 74823 . + 0 ID=cds-NP_009363.1;Parent=rna-NM_001178182.1;Dbxref=SGD:S000000035,GeneID:851194,Genbank:NP_009363.1;Name=NP_009363.1;Note=hypothetical protein%3B YAL037W has a paralog%2C YOR342C%2C that arose from the whole genome duplication;gbkey=CDS;locus_tag=YAL037W;product=uncharacterized protein;protein_id=NP_009363.1
Chr01 RefSeq gene 75043 76152 . - . ID=gene-YAL036C;Dbxref=GeneID:851195;Name=RBG1;end_range=76152,.;gbkey=Gene;gene=RBG1;gene_biotype=protein_coding;gene_synonym=FUN11;locus_tag=YAL036C;partial=true;start_range=.,75043
Chr01 RefSeq mRNA 75043 76152 . - . ID=rna-NM_001178181.1;Parent=gene-YAL036C;Dbxref=GeneID:851195,Genbank:NM_001178181.1;Name=NM_001178181.1;end_range=76152,.;gbkey=mRNA;gene=RBG1;locus_tag=YAL036C;partial=true;product=GTP-binding protein RBG1;start_range=.,75043;transcript_id=NM_001178181.1
Chr01 RefSeq exon 75043 76152 . - . ID=exon-NM_001178181.1-1;Parent=rna-NM_001178181.1;Dbxref=GeneID:851195,Genbank:NM_001178181.1;end_range=76152,.;gbkey=mRNA;gene=RBG1;locus_tag=YAL036C;partial=true;product=GTP-binding protein RBG1;start_range=.,75043;transcript_id=NM_001178181.1
Chr01 RefSeq CDS 75043 76152 . - 0 ID=cds-NP_009364.1;Parent=rna-NM_001178181.1;Dbxref=SGD:S000000034,GeneID:851195,Genbank:NP_009364.1;Name=NP_009364.1;Note=Member of the DRG family of GTP-binding proteins%3B associates with translating ribosomes%3B interacts with Tma46p%2C Ygr250cp%2C Gir2p and Yap1p via two-hybrid;experiment=EXISTENCE:direct assay:GO:0005525 GTP binding [PMID:23002146],EXISTENCE:direct assay:GO:0005737 cytoplasm [PMID:14562095],EXISTENCE:direct assay:GO:0005844 polysome [PMID:19448108|PMID:23002146],EXISTENCE:direct assay:GO:0010494 cytoplasmic stress granule [PMID:26777405],EXISTENCE:genetic interaction:GO:0002181 cytoplasmic translation [PMID:21076151],EXISTENCE:genetic interaction:GO:1903833 positive regulation of cellular response to amino acid starvation [PMID:23899355];gbkey=CDS;gene=RBG1;locus_tag=YAL036C;product=GTP-binding protein RBG1;protein_id=NP_009364.1
Chr01 RefSeq gene 76427 79435 . + . ID=gene-YAL035W;Dbxref=GeneID:851196;Name=FUN12;end_range=79435,.;gbkey=Gene;gene=FUN12;gene_biotype=protein_coding;gene_synonym=yIF2;locus_tag=YAL035W;partial=true;start_range=.,76427
Chr01 RefSeq mRNA 76427 79435 . + . ID=rna-NM_001178180.1;Parent=gene-YAL035W;Dbxref=GeneID:851196,Genbank:NM_001178180.1;Name=NM_001178180.1;end_range=79435,.;gbkey=mRNA;gene=FUN12;locus_tag=YAL035W;partial=true;product=translation initiation factor eIF5B;start_range=.,76427;transcript_id=NM_001178180.1
Chr01 RefSeq exon 76427 79435 . + . ID=exon-NM_001178180.1-1;Parent=rna-NM_001178180.1;Dbxref=GeneID:851196,Genbank:NM_001178180.1;end_range=79435,.;gbkey=mRNA;gene=FUN12;locus_tag=YAL035W;partial=true;product=translation initiation factor eIF5B;start_range=.,76427;transcript_id=NM_001178180.1
Chr01 RefSeq CDS 76427 79435 . + 0 ID=cds-NP_009365.1;Parent=rna-NM_001178180.1;Dbxref=SGD:S000000033,GeneID:851196,Genbank:NP_009365.1;Name=NP_009365.1;Note=Translation initiation factor eIF5B%3B GTPase that promotes Met-tRNAiMet binding to ribosomes and ribosomal subunit joining%3B promotes GTP-dependent maturation of 18S rRNA by Nob1p%3B protein abundance increases in response to DNA replication stress%3B homolog of bacterial IF2;experiment=EXISTENCE:direct assay:GO:0001732 formation of cytoplasmic translation initiation complex [PMID:12008673],EXISTENCE:direct assay:GO:0003743 translation initiation factor activity [PMID:12008673|PMID:9624054],EXISTENCE:direct assay:GO:0003924 GTPase activity [PMID:19029250|PMID:12507428|PMID:16461768|PMID:17189426],EXISTENCE:direct assay:GO:0005525 GTP binding [PMID:21335519|PMID:17189426],EXISTENCE:direct assay:GO:0005737 cytoplasm [PMID:22842922],EXISTENCE:direct assay:GO:0005739 mitochondrion [PMID:14576278|PMID:16823961],EXISTENCE:direct assay:GO:0005829 cytosol [PMID:26928762],EXISTENCE:direct assay:GO:0010494 cytoplasmic stress granule [PMID:26777405],EXISTENCE:direct assay:GO:0022627 cytosolic small ribosomal subunit [PMID:9624054],EXISTENCE:direct assay:GO:0031369 translation initiation factor binding [PMID:10982835],EXISTENCE:direct assay:GO:0033290 eukaryotic 48S preinitiation complex [PMID:17242201],EXISTENCE:direct assay:GO:0043022 ribosome binding [PMID:21335519|PMID:12507428],EXISTENCE:direct assay:GO:0070181 small ribosomal subunit rRNA binding [PMID:19029250],EXISTENCE:mutant phenotype:GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA%2C 5.8S rRNA%2C LSU-rRNA) [PMID:22751017],EXISTENCE:mutant phenotype:GO:0001732 formation of cytoplasmic translation initiation complex [PMID:17242201|PMID:12507428|PMID:17189426],EXISTENCE:mutant phenotype:GO:0003924 GTPase activity [PMID:12471154],EXISTENCE:mutant phenotype:GO:0006446 regulation of translational initiation [PMID:12507428],EXISTENCE:mutant phenotype:GO:0042255 ribosome assembly [PMID:22770215],EXISTENCE:mutant phenotype:GO:0042256 mature ribosome assembly [PMID:12507428];gbkey=CDS;gene=FUN12;locus_tag=YAL035W;product=translation initiation factor eIF5B;protein_id=NP_009365.1
Chr01 RefSeq gene 79718 80587 . + . ID=gene-YAL034W-A;Dbxref=GeneID:851197;Name=MTW1;end_range=80587,.;gbkey=Gene;gene=MTW1;gene_biotype=protein_coding;gene_synonym=DSN3,NSL2;locus_tag=YAL034W-A;partial=true;start_range=.,79718
Chr01 RefSeq mRNA 79718 80587 . + . ID=rna-NM_001178179.1;Parent=gene-YAL034W-A;Dbxref=GeneID:851197,Genbank:NM_001178179.1;Name=NM_001178179.1;end_range=80587,.;gbkey=mRNA;gene=MTW1;locus_tag=YAL034W-A;partial=true;product=MIND complex subunit MTW1;start_range=.,79718;transcript_id=NM_001178179.1
Chr01 RefSeq exon 79718 80587 . + . ID=exon-NM_001178179.1-1;Parent=rna-NM_001178179.1;Dbxref=GeneID:851197,Genbank:NM_001178179.1;end_range=80587,.;gbkey=mRNA;gene=MTW1;locus_tag=YAL034W-A;partial=true;product=MIND complex subunit MTW1;start_range=.,79718;transcript_id=NM_001178179.1
Chr01 RefSeq CDS 79718 80587 . + 0 ID=cds-NP_009367.1;Parent=rna-NM_001178179.1;Dbxref=SGD:S000000032,GeneID:851197,Genbank:NP_009367.1;Name=NP_009367.1;Note=Essential component of the MIND kinetochore complex%3B joins kinetochore subunits contacting DNA to those contacting microtubules%3B critical to kinetochore assembly%3B complex consists of Mtw1p Including Nnf1p-Nsl1p-Dsn1p (MIND);experiment=EXISTENCE:direct assay:GO:0000818 nuclear MIS12/MIND complex [PMID:14633972],EXISTENCE:direct assay:GO:0000922 spindle pole [PMID:12455957],EXISTENCE:direct assay:GO:0007059 chromosome segregation [PMID:12455957],EXISTENCE:mutant phenotype:GO:0034501 protein localization to kinetochore [PMID:19893618];gbkey=CDS;gene=MTW1;locus_tag=YAL034W-A;product=MIND complex subunit MTW1;protein_id=NP_009367.1
Chr01 RefSeq gene 80710 81951 . - . ID=gene-YAL034C;Dbxref=GeneID:851199;Name=FUN19;end_range=81951,.;gbkey=Gene;gene=FUN19;gene_biotype=protein_coding;locus_tag=YAL034C;partial=true;start_range=.,80710
Chr01 RefSeq mRNA 80710 81951 . - . ID=rna-NM_001180035.1;Parent=gene-YAL034C;Dbxref=GeneID:851199,Genbank:NM_001180035.1;Name=NM_001180035.1;end_range=81951,.;gbkey=mRNA;gene=FUN19;locus_tag=YAL034C;partial=true;product=Fun19p;start_range=.,80710;transcript_id=NM_001180035.1
Chr01 RefSeq exon 80710 81951 . - . ID=exon-NM_001180035.1-1;Parent=rna-NM_001180035.1;Dbxref=GeneID:851199,Genbank:NM_001180035.1;end_range=81951,.;gbkey=mRNA;gene=FUN19;locus_tag=YAL034C;partial=true;product=Fun19p;start_range=.,80710;transcript_id=NM_001180035.1
Chr01 RefSeq CDS 80710 81951 . - 0 ID=cds-NP_009368.2;Parent=rna-NM_001180035.1;Dbxref=SGD:S000002134,GeneID:851199,Genbank:NP_009368.2;Name=NP_009368.2;Note=Non-essential hypothetical protein%3B expression induced in response to heat stress%3B FUN19 has a paralog%2C YOR338W%2C that arose from the whole genome duplication;gbkey=CDS;gene=FUN19;locus_tag=YAL034C;product=Fun19p;protein_id=NP_009368.2
Chr01 RefSeq gene 82706 83227 . + . ID=gene-YAL033W;Dbxref=GeneID:851200;Name=POP5;end_range=83227,.;gbkey=Gene;gene=POP5;gene_biotype=protein_coding;gene_synonym=FUN53;locus_tag=YAL033W;partial=true;start_range=.,82706
Chr01 RefSeq mRNA 82706 83227 . + . ID=rna-NM_001178178.1;Parent=gene-YAL033W;Dbxref=GeneID:851200,Genbank:NM_001178178.1;Name=NM_001178178.1;end_range=83227,.;gbkey=mRNA;gene=POP5;locus_tag=YAL033W;partial=true;product=RNA-binding protein POP5;start_range=.,82706;transcript_id=NM_001178178.1
Chr01 RefSeq exon 82706 83227 . + . ID=exon-NM_001178178.1-1;Parent=rna-NM_001178178.1;Dbxref=GeneID:851200,Genbank:NM_001178178.1;end_range=83227,.;gbkey=mRNA;gene=POP5;locus_tag=YAL033W;partial=true;product=RNA-binding protein POP5;start_range=.,82706;transcript_id=NM_001178178.1
Chr01 RefSeq CDS 82706 83227 . + 0 ID=cds-NP_009369.1;Parent=rna-NM_001178178.1;Dbxref=SGD:S000000031,GeneID:851200,Genbank:NP_009369.1;Name=NP_009369.1;Note=Subunit of both RNase MRP and nuclear RNase P%3B RNase MRP cleaves pre-rRNA%2C while nuclear RNase P cleaves tRNA precursors to generate mature 5' ends and facilitates turnover of nuclear RNAs;experiment=EXISTENCE:direct assay:GO:0000171 ribonuclease MRP activity [PMID:9620854],EXISTENCE:direct assay:GO:0000172 ribonuclease MRP complex [PMID:9620854],EXISTENCE:direct assay:GO:0000294 nuclear-transcribed mRNA catabolic process%2C endonucleolytic cleavage-dependent decay [PMID:14729943],EXISTENCE:direct assay:GO:0003723 RNA binding [PMID:23700311],EXISTENCE:direct assay:GO:0004526 ribonuclease P activity [PMID:9620854],EXISTENCE:direct assay:GO:0005655 nucleolar ribonuclease P complex [PMID:9620854],EXISTENCE:direct assay:GO:0034965 intronic box C/D RNA processing [PMID:18713869],EXISTENCE:mutant phenotype:GO:0000171 ribonuclease MRP activity [PMID:9620854],EXISTENCE:mutant phenotype:GO:0004526 ribonuclease P activity [PMID:9620854],EXISTENCE:mutant phenotype:GO:0006364 rRNA processing [PMID:9620854],EXISTENCE:mutant phenotype:GO:0008033 tRNA processing [PMID:9620854],EXISTENCE:physical interaction:GO:0000172 ribonuclease MRP complex [PMID:17881380];gbkey=CDS;gene=POP5;locus_tag=YAL033W;product=RNA-binding protein POP5;protein_id=NP_009369.1
Chr01 RefSeq gene 83335 84474 . - . ID=gene-YAL032C;Dbxref=GeneID:851201;Name=PRP45;end_range=84474,.;gbkey=Gene;gene=PRP45;gene_biotype=protein_coding;gene_synonym=FUN20;locus_tag=YAL032C;partial=true;start_range=.,83335
Chr01 RefSeq mRNA 83335 84474 . - . ID=rna-NM_001178177.1;Parent=gene-YAL032C;Dbxref=GeneID:851201,Genbank:NM_001178177.1;Name=NM_001178177.1;end_range=84474,.;gbkey=mRNA;gene=PRP45;locus_tag=YAL032C;partial=true;product=mRNA splicing protein PRP45;start_range=.,83335;transcript_id=NM_001178177.1
Chr01 RefSeq exon 83335 84474 . - . ID=exon-NM_001178177.1-1;Parent=rna-NM_001178177.1;Dbxref=GeneID:851201,Genbank:NM_001178177.1;end_range=84474,.;gbkey=mRNA;gene=PRP45;locus_tag=YAL032C;partial=true;product=mRNA splicing protein PRP45;start_range=.,83335;transcript_id=NM_001178177.1
Chr01 RefSeq CDS 83335 84474 . - 0 ID=cds-NP_009370.1;Parent=rna-NM_001178177.1;Dbxref=SGD:S000000030,GeneID:851201,Genbank:NP_009370.1;Name=NP_009370.1;Note=Protein required for pre-mRNA splicing%3B associates with the spliceosome and interacts with splicing factors Prp22p and Prp46p%3B orthologous to human transcriptional coactivator SKIP and can activate transcription of a reporter gene;experiment=EXISTENCE:curator inference:GO:0000384 first spliceosomal transesterification activity [PMID:12554883],EXISTENCE:curator inference:GO:0000386 second spliceosomal transesterification activity [PMID:12554883],EXISTENCE:direct assay:GO:0005634 nucleus [PMID:12359070],EXISTENCE:direct assay:GO:0071006 U2-type catalytic step 1 spliceosome [PMID:12554883],EXISTENCE:direct assay:GO:0071007 U2-type catalytic step 2 spliceosome [PMID:12554883],EXISTENCE:direct assay:GO:0071014 post-mRNA release spliceosomal complex [PMID:12554883],EXISTENCE:genetic interaction:GO:0000350 generation of catalytic spliceosome for second transesterification step [PMID:19016306],EXISTENCE:mutant phenotype:GO:0000350 generation of catalytic spliceosome for second transesterification step [PMID:19016306];gbkey=CDS;gene=PRP45;locus_tag=YAL032C;product=mRNA splicing protein PRP45;protein_id=NP_009370.1
Chr01 RefSeq gene 84749 87031 . - . ID=gene-YAL031C;Dbxref=GeneID:851202;Name=GIP4;end_range=87031,.;gbkey=Gene;gene=GIP4;gene_biotype=protein_coding;gene_synonym=FUN21;locus_tag=YAL031C;partial=true;start_range=.,84749
Chr01 RefSeq mRNA 84749 87031 . - . ID=rna-NM_001178176.1;Parent=gene-YAL031C;Dbxref=GeneID:851202,Genbank:NM_001178176.1;Name=NM_001178176.1;end_range=87031,.;gbkey=mRNA;gene=GIP4;locus_tag=YAL031C;partial=true;product=protein phosphatase regulator GIP4;start_range=.,84749;transcript_id=NM_001178176.1
Chr01 RefSeq exon 84749 87031 . - . ID=exon-NM_001178176.1-1;Parent=rna-NM_001178176.1;Dbxref=GeneID:851202,Genbank:NM_001178176.1;end_range=87031,.;gbkey=mRNA;gene=GIP4;locus_tag=YAL031C;partial=true;product=protein phosphatase regulator GIP4;start_range=.,84749;transcript_id=NM_001178176.1
Chr01 RefSeq CDS 84749 87031 . - 0 ID=cds-NP_009371.1;Parent=rna-NM_001178176.1;Dbxref=SGD:S000000029,GeneID:851202,Genbank:NP_009371.1;Name=NP_009371.1;Note=Cytoplasmic protein that regulates protein phosphatase 1 Glc7p%3B protein overexpression relocalizes Glc7p from the nucleus and prevents chromosome segregation%3B potential Cdc28p substrate;experiment=EXISTENCE:direct assay:GO:0005737 cytoplasm [PMID:14562095],EXISTENCE:direct assay:GO:0008157 protein phosphatase 1 binding [PMID:16537909],EXISTENCE:mutant phenotype:GO:0007059 chromosome segregation [PMID:16537909],EXISTENCE:mutant phenotype:GO:0019888 protein phosphatase regulator activity [PMID:16537909],EXISTENCE:mutant phenotype:GO:0043666 regulation of phosphoprotein phosphatase activity [PMID:16537909];gbkey=CDS;gene=GIP4;locus_tag=YAL031C;product=protein phosphatase regulator GIP4;protein_id=NP_009371.1
Chr01 RefSeq gene 87286 87752 . + . ID=gene-YAL030W;Dbxref=GeneID:851203;Name=SNC1;end_range=87752,.;gbkey=Gene;gene=SNC1;gene_biotype=protein_coding;locus_tag=YAL030W;partial=true;start_range=.,87286
Chr01 RefSeq mRNA 87286 87752 . + . ID=rna-NM_001178175.1;Parent=gene-YAL030W;Dbxref=GeneID:851203,Genbank:NM_001178175.1;Name=NM_001178175.1;end_range=87752,.;gbkey=mRNA;gene=SNC1;locus_tag=YAL030W;partial=true;product=SNAP receptor SNC1;start_range=.,87286;transcript_id=NM_001178175.1
Chr01 RefSeq exon 87286 87387 . + . ID=exon-NM_001178175.1-1;Parent=rna-NM_001178175.1;Dbxref=GeneID:851203,Genbank:NM_001178175.1;gbkey=mRNA;gene=SNC1;locus_tag=YAL030W;partial=true;product=SNAP receptor SNC1;start_range=.,87286;transcript_id=NM_001178175.1
Chr01 RefSeq exon 87501 87752 . + . ID=exon-NM_001178175.1-2;Parent=rna-NM_001178175.1;Dbxref=GeneID:851203,Genbank:NM_001178175.1;end_range=87752,.;gbkey=mRNA;gene=SNC1;locus_tag=YAL030W;partial=true;product=SNAP receptor SNC1;transcript_id=NM_001178175.1
Chr01 RefSeq CDS 87286 87387 . + 0 ID=cds-NP_009372.1;Parent=rna-NM_001178175.1;Dbxref=SGD:S000000028,GeneID:851203,Genbank:NP_009372.1;Name=NP_009372.1;Note=Vesicle membrane receptor protein (v-SNARE)%3B involved in the fusion between Golgi-derived secretory vesicles with the plasma membrane%3B proposed to be involved in endocytosis%3B member of the synaptobrevin/VAMP family of R-type v-SNARE proteins%3B SNC1 has a paralog%2C SNC2%2C that arose from the whole genome duplication;experiment=EXISTENCE:direct assay:GO:0005484 SNAP receptor activity [PMID:14981247],EXISTENCE:direct assay:GO:0005768 endosome [PMID:16452633],EXISTENCE:direct assay:GO:0005802 trans-Golgi network [PMID:16452633],EXISTENCE:direct assay:GO:0005886 plasma membrane [PMID:10637288],EXISTENCE:direct assay:GO:0005933 cellular bud [PMID:26928762],EXISTENCE:direct assay:GO:0005935 cellular bud neck [PMID:20059749],EXISTENCE:direct assay:GO:0006906 vesicle fusion [PMID:11001046],EXISTENCE:direct assay:GO:0030658 transport vesicle membrane [PMID:10637288],EXISTENCE:direct assay:GO:0031201 SNARE complex [PMID:9195974],EXISTENCE:direct assay:GO:0071944 cell periphery [PMID:26928762],EXISTENCE:mutant phenotype:GO:0006887 exocytosis [PMID:9195971],EXISTENCE:mutant phenotype:GO:0006893 Golgi to plasma membrane transport [PMID:8374953],EXISTENCE:mutant phenotype:GO:0006897 endocytosis [PMID:11029060];gbkey=CDS;gene=SNC1;locus_tag=YAL030W;product=SNAP receptor SNC1;protein_id=NP_009372.1
Chr01 RefSeq CDS 87501 87752 . + 0 ID=cds-NP_009372.1;Parent=rna-NM_001178175.1;Dbxref=SGD:S000000028,GeneID:851203,Genbank:NP_009372.1;Name=NP_009372.1;Note=Vesicle membrane receptor protein (v-SNARE)%3B involved in the fusion between Golgi-derived secretory vesicles with the plasma membrane%3B proposed to be involved in endocytosis%3B member of the synaptobrevin/VAMP family of R-type v-SNARE proteins%3B SNC1 has a paralog%2C SNC2%2C that arose from the whole genome duplication;experiment=EXISTENCE:direct assay:GO:0005484 SNAP receptor activity [PMID:14981247],EXISTENCE:direct assay:GO:0005768 endosome [PMID:16452633],EXISTENCE:direct assay:GO:0005802 trans-Golgi network [PMID:16452633],EXISTENCE:direct assay:GO:0005886 plasma membrane [PMID:10637288],EXISTENCE:direct assay:GO:0005933 cellular bud [PMID:26928762],EXISTENCE:direct assay:GO:0005935 cellular bud neck [PMID:20059749],EXISTENCE:direct assay:GO:0006906 vesicle fusion [PMID:11001046],EXISTENCE:direct assay:GO:0030658 transport vesicle membrane [PMID:10637288],EXISTENCE:direct assay:GO:0031201 SNARE complex [PMID:9195974],EXISTENCE:direct assay:GO:0071944 cell periphery [PMID:26928762],EXISTENCE:mutant phenotype:GO:0006887 exocytosis [PMID:9195971],EXISTENCE:mutant phenotype:GO:0006893 Golgi to plasma membrane transport [PMID:8374953],EXISTENCE:mutant phenotype:GO:0006897 endocytosis [PMID:11029060];gbkey=CDS;gene=SNC1;locus_tag=YAL030W;product=SNAP receptor SNC1;protein_id=NP_009372.1
Chr01 RefSeq gene 87855 92270 . - . ID=gene-YAL029C;Dbxref=GeneID:851204;Name=MYO4;end_range=92270,.;gbkey=Gene;gene=MYO4;gene_biotype=protein_coding;gene_synonym=FUN22,SHE1;locus_tag=YAL029C;partial=true;start_range=.,87855
Chr01 RefSeq mRNA 87855 92270 . - . ID=rna-NM_001178174.1;Parent=gene-YAL029C;Dbxref=GeneID:851204,Genbank:NM_001178174.1;Name=NM_001178174.1;end_range=92270,.;gbkey=mRNA;gene=MYO4;locus_tag=YAL029C;partial=true;product=myosin 4;start_range=.,87855;transcript_id=NM_001178174.1
Chr01 RefSeq exon 87855 92270 . - . ID=exon-NM_001178174.1-1;Parent=rna-NM_001178174.1;Dbxref=GeneID:851204,Genbank:NM_001178174.1;end_range=92270,.;gbkey=mRNA;gene=MYO4;locus_tag=YAL029C;partial=true;product=myosin 4;start_range=.,87855;transcript_id=NM_001178174.1
Chr01 RefSeq CDS 87855 92270 . - 0 ID=cds-NP_009373.1;Parent=rna-NM_001178174.1;Dbxref=SGD:S000000027,GeneID:851204,Genbank:NP_009373.1;Name=NP_009373.1;Note=Type V myosin motor involved in actin-based transport of cargos%3B required for mRNA transport%2C including ASH1 mRNA%2C and facilitating the growth and movement of ER tubules into the growing bud along with She3p%3B MYO4 has a paralog%2C MYO2%2C that arose from the whole genome duplication;experiment=EXISTENCE:direct assay:GO:0000146 microfilament motor activity [PMID:11381095],EXISTENCE:direct assay:GO:0005739 mitochondrion [PMID:14576278|PMID:16823961],EXISTENCE:direct assay:GO:0005933 cellular bud [PMID:12725728|PMID:20439999],EXISTENCE:direct assay:GO:0005934 cellular bud tip [PMID:20439999],EXISTENCE:direct assay:GO:0031941 filamentous actin [PMID:11381095],EXISTENCE:direct assay:GO:0051015 actin filament binding [PMID:11381095],EXISTENCE:mutant phenotype:GO:0007533 mating type switching [PMID:8625407],EXISTENCE:mutant phenotype:GO:0008298 intracellular mRNA localization [PMID:11030653|PMID:9219698|PMID:9288973],EXISTENCE:mutant phenotype:GO:0048309 endoplasmic reticulum inheritance [PMID:14691136|PMID:16890529],EXISTENCE:physical interaction:GO:0008298 intracellular mRNA localization [PMID:10212145|PMID:11030653];gbkey=CDS;gene=MYO4;locus_tag=YAL029C;product=myosin 4;protein_id=NP_009373.1
Chr01 RefSeq gene 92900 94486 . + . ID=gene-YAL028W;Dbxref=GeneID:851205;Name=FRT2;end_range=94486,.;gbkey=Gene;gene=FRT2;gene_biotype=protein_coding;gene_synonym=HPH2;locus_tag=YAL028W;partial=true;start_range=.,92900
Chr01 RefSeq mRNA 92900 94486 . + . ID=rna-NM_001178173.1;Parent=gene-YAL028W;Dbxref=GeneID:851205,Genbank:NM_001178173.1;Name=NM_001178173.1;end_range=94486,.;gbkey=mRNA;gene=FRT2;locus_tag=YAL028W;partial=true;product=Frt2p;start_range=.,92900;transcript_id=NM_001178173.1
Chr01 RefSeq exon 92900 94486 . + . ID=exon-NM_001178173.1-1;Parent=rna-NM_001178173.1;Dbxref=GeneID:851205,Genbank:NM_001178173.1;end_range=94486,.;gbkey=mRNA;gene=FRT2;locus_tag=YAL028W;partial=true;product=Frt2p;start_range=.,92900;transcript_id=NM_001178173.1
Chr01 RefSeq CDS 92900 94486 . + 0 ID=cds-NP_009374.1;Parent=rna-NM_001178173.1;Dbxref=SGD:S000000026,GeneID:851205,Genbank:NP_009374.1;Name=NP_009374.1;Note=Tail-anchored ER membrane hypothetical protein%3B interacts with homolog Frt1p%3B promotes growth in conditions of high Na+%2C alkaline pH%2C or cell wall stress%2C possibly via a role in posttranslational translocation%3B potential Cdc28p substrate%3B FRT2 has a paralog%2C FRT1%2C that arose from the whole genome duplication;experiment=EXISTENCE:direct assay:GO:0005783 endoplasmic reticulum [PMID:15189990],EXISTENCE:mutant phenotype:GO:0071469 cellular response to alkaline pH [PMID:15189990],EXISTENCE:mutant phenotype:GO:0071472 cellular response to salt stress [PMID:15189990],EXISTENCE:physical interaction:GO:0031204 posttranslational protein targeting to membrane%2C translocation [PMID:21097665];gbkey=CDS;gene=FRT2;locus_tag=YAL028W;product=Frt2p;protein_id=NP_009374.1
Chr01 RefSeq gene 94687 95472 . + . ID=gene-YAL027W;Dbxref=GeneID:851206;Name=SAW1;end_range=95472,.;gbkey=Gene;gene=SAW1;gene_biotype=protein_coding;locus_tag=YAL027W;partial=true;start_range=.,94687
Chr01 RefSeq mRNA 94687 95472 . + . ID=rna-NM_001178172.1;Parent=gene-YAL027W;Dbxref=GeneID:851206,Genbank:NM_001178172.1;Name=NM_001178172.1;end_range=95472,.;gbkey=mRNA;gene=SAW1;locus_tag=YAL027W;partial=true;product=DNA-binding protein SAW1;start_range=.,94687;transcript_id=NM_001178172.1
Chr01 RefSeq exon 94687 95472 . + . ID=exon-NM_001178172.1-1;Parent=rna-NM_001178172.1;Dbxref=GeneID:851206,Genbank:NM_001178172.1;end_range=95472,.;gbkey=mRNA;gene=SAW1;locus_tag=YAL027W;partial=true;product=DNA-binding protein SAW1;start_range=.,94687;transcript_id=NM_001178172.1
Chr01 RefSeq CDS 94687 95472 . + 0 ID=cds-NP_009375.1;Parent=rna-NM_001178172.1;Dbxref=SGD:S000000025,GeneID:851206,Genbank:NP_009375.1;Name=NP_009375.1;Note=5'- and 3'-flap DNA binding protein%3B recruits Rad1p-Rad10p to single-strand annealing intermediates with 3' non-homologous tails for removal during double-strand break repair%3B complexes with Rad1p-Rad10p and stimulates its endonuclease activity%3B green fluorescent protein (GFP)-fusion protein localizes to the nucleus;experiment=EXISTENCE:direct assay:GO:0005634 nucleus [PMID:14562095],EXISTENCE:direct assay:GO:0032079 positive regulation of endodeoxyribonuclease activity [PMID:23299942],EXISTENCE:direct assay:GO:0070337 3'-flap-structured DNA binding [PMID:23299942],EXISTENCE:direct assay:GO:0070338 5'-flap-structured DNA binding [PMID:23299942],EXISTENCE:genetic interaction:GO:0000736 double-strand break repair via single-strand annealing%2C removal of nonhomologous ends [PMID:18471978],EXISTENCE:mutant phenotype:GO:0000736 double-strand break repair via single-strand annealing%2C removal of nonhomologous ends [PMID:18471978];gbkey=CDS;gene=SAW1;locus_tag=YAL027W;product=DNA-binding protein SAW1;protein_id=NP_009375.1
Chr01 RefSeq gene 95630 99697 . - . ID=gene-YAL026C;Dbxref=GeneID:851207;Name=DRS2;end_range=99697,.;gbkey=Gene;gene=DRS2;gene_biotype=protein_coding;gene_synonym=FUN38,SWA3;locus_tag=YAL026C;partial=true;start_range=.,95630
Chr01 RefSeq mRNA 95630 99697 . - . ID=rna-NM_001178171.2;Parent=gene-YAL026C;Dbxref=GeneID:851207,Genbank:NM_001178171.2;Name=NM_001178171.2;end_range=99697,.;gbkey=mRNA;gene=DRS2;locus_tag=YAL026C;partial=true;product=aminophospholipid-translocating P4-type ATPase DRS2;start_range=.,95630;transcript_id=NM_001178171.2
Chr01 RefSeq exon 95630 99697 . - . ID=exon-NM_001178171.2-1;Parent=rna-NM_001178171.2;Dbxref=GeneID:851207,Genbank:NM_001178171.2;end_range=99697,.;gbkey=mRNA;gene=DRS2;locus_tag=YAL026C;partial=true;product=aminophospholipid-translocating P4-type ATPase DRS2;start_range=.,95630;transcript_id=NM_001178171.2
Chr01 RefSeq CDS 95630 99697 . - 0 ID=cds-NP_009376.2;Parent=rna-NM_001178171.2;Dbxref=SGD:S000000024,GeneID:851207,Genbank:NP_009376.2;Name=NP_009376.2;Note=Trans-golgi network aminophospholipid translocase (flippase)%3B maintains membrane lipid asymmetry in post-Golgi secretory vesicles%3B contributes to clathrin-coated vesicle formation%2C endocytosis%2C protein trafficking between the Golgi and endosomal system and the cellular response to mating pheromone%3B autoinhibited by its C-terminal tail%3B localizes to the trans-Golgi network%3B mutations in human homolog ATP8B1 result in liver disease;experiment=EXISTENCE:direct assay:GO:0005783 endoplasmic reticulum [PMID:26928762],EXISTENCE:direct assay:GO:0005802 trans-Golgi network [PMID:10601336|PMID:12221123|PMID:15090616],EXISTENCE:genetic interaction:GO:0000749 response to pheromone triggering conjugation with cellular fusion [PMID:25378585],EXISTENCE:genetic interaction:GO:0006886 intracellular protein transport [PMID:12221123],EXISTENCE:genetic interaction:GO:0006892 post-Golgi vesicle-mediated transport [PMID:10601336],EXISTENCE:genetic interaction:GO:0006897 endocytosis [PMID:12631737|PMID:16195350],EXISTENCE:genetic interaction:GO:0090555 phosphatidylethanolamine flippase activity [PMID:16452632],EXISTENCE:genetic interaction:GO:0140345 phosphatidylcholine flippase activity [PMID:16452632],EXISTENCE:genetic interaction:GO:0140346 phosphatidylserine flippase activity [PMID:16452632],EXISTENCE:mutant phenotype:GO:0006892 post-Golgi vesicle-mediated transport [PMID:10601336],EXISTENCE:mutant phenotype:GO:0032456 endocytic recycling [PMID:24272750],EXISTENCE:mutant phenotype:GO:0045332 phospholipid translocation [PMID:15249668|PMID:16452632],EXISTENCE:mutant phenotype:GO:0090555 phosphatidylethanolamine flippase activity [PMID:16452632],EXISTENCE:mutant phenotype:GO:0140346 phosphatidylserine flippase activity [PMID:15249668|PMID:16452632|PMID:8633245],EXISTENCE:physical interaction:GO:1990530 Cdc50p-Drs2p complex [PMID:15090616];gbkey=CDS;gene=DRS2;locus_tag=YAL026C;product=aminophospholipid-translocating P4-type ATPase DRS2;protein_id=NP_009376.2
Chr01 RefSeq gene 99305 99868 . + . ID=gene-YNCA0001W;Dbxref=GeneID:9164866;Name=HRA1;gbkey=Gene;gene=HRA1;gene_biotype=ncRNA;locus_tag=YNCA0001W
Chr01 RefSeq ncRNA 99305 99868 . + . ID=rna-NR_132149.1;Parent=gene-YNCA0001W;Dbxref=SGD:S000119380,GeneID:9164866,Genbank:NR_132149.1;Name=NR_132149.1;Note=Non-protein-coding RNA%3B substrate of RNase P%2C possibly involved in rRNA processing%2C specifically maturation of 20S precursor into the mature 18S rRNA;gbkey=ncRNA;gene=HRA1;locus_tag=YNCA0001W;orig_transcript_id=gnl|WGS:|mrna.YNCA0001W-RA;product=HRA1;transcript_id=NR_132149.1
Chr01 RefSeq exon 99305 99868 . + . ID=exon-NR_132149.1-1;Parent=rna-NR_132149.1;Dbxref=SGD:S000119380,GeneID:9164866,Genbank:NR_132149.1;Note=Non-protein-coding RNA%3B substrate of RNase P%2C possibly involved in rRNA processing%2C specifically maturation of 20S precursor into the mature 18S rRNA;gbkey=ncRNA;gene=HRA1;locus_tag=YNCA0001W;orig_transcript_id=gnl|WGS:|mrna.YNCA0001W-RA;product=HRA1;transcript_id=NR_132149.1
Chr01 RefSeq gene 100225 101145 . - . ID=gene-YAL025C;Dbxref=GeneID:851208;Name=MAK16;end_range=101145,.;gbkey=Gene;gene=MAK16;gene_biotype=protein_coding;locus_tag=YAL025C;partial=true;start_range=.,100225
Chr01 RefSeq mRNA 100225 101145 . - . ID=rna-NM_001178170.2;Parent=gene-YAL025C;Dbxref=GeneID:851208,Genbank:NM_001178170.2;Name=NM_001178170.2;end_range=101145,.;gbkey=mRNA;gene=MAK16;locus_tag=YAL025C;partial=true;product=ribosome biosynthesis protein MAK16;start_range=.,100225;transcript_id=NM_001178170.2
Chr01 RefSeq exon 100225 101145 . - . ID=exon-NM_001178170.2-1;Parent=rna-NM_001178170.2;Dbxref=GeneID:851208,Genbank:NM_001178170.2;end_range=101145,.;gbkey=mRNA;gene=MAK16;locus_tag=YAL025C;partial=true;product=ribosome biosynthesis protein MAK16;start_range=.,100225;transcript_id=NM_001178170.2
Chr01 RefSeq CDS 100225 101145 . - 0 ID=cds-NP_009377.2;Parent=rna-NM_001178170.2;Dbxref=SGD:S000000023,GeneID:851208,Genbank:NP_009377.2;Name=NP_009377.2;Note=Essential nuclear protein%3B constituent of 66S pre-ribosomal particles%3B required for maturation of 25S and 5.8S rRNAs%3B required for maintenance of M1 satellite double-stranded RNA of the L-A virus;experiment=EXISTENCE:direct assay:GO:0005730 nucleolus [PMID:10838225],EXISTENCE:direct assay:GO:0030687 preribosome%2C large subunit precursor [PMID:11583614],EXISTENCE:mutant phenotype:GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA%2C 5.8S rRNA%2C LSU-rRNA) [PMID:16710831],EXISTENCE:mutant phenotype:GO:0000466 maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA%2C 5.8S rRNA%2C LSU-rRNA) [PMID:16710831],EXISTENCE:mutant phenotype:GO:0042273 ribosomal large subunit biogenesis [PMID:7739558];gbkey=CDS;gene=MAK16;locus_tag=YAL025C;product=ribosome biosynthesis protein MAK16;protein_id=NP_009377.2
Chr01 RefSeq gene 101565 105872 . - . ID=gene-YAL024C;Dbxref=GeneID:851209;Name=LTE1;end_range=105872,.;gbkey=Gene;gene=LTE1;gene_biotype=protein_coding;gene_synonym=MSI2;locus_tag=YAL024C;partial=true;start_range=.,101565
Chr01 RefSeq mRNA 101565 105872 . - . ID=rna-NM_001178169.1;Parent=gene-YAL024C;Dbxref=GeneID:851209,Genbank:NM_001178169.1;Name=NM_001178169.1;end_range=105872,.;gbkey=mRNA;gene=LTE1;locus_tag=YAL024C;partial=true;product=mitotic regulator LTE1;start_range=.,101565;transcript_id=NM_001178169.1
Chr01 RefSeq exon 101565 105872 . - . ID=exon-NM_001178169.1-1;Parent=rna-NM_001178169.1;Dbxref=GeneID:851209,Genbank:NM_001178169.1;end_range=105872,.;gbkey=mRNA;gene=LTE1;locus_tag=YAL024C;partial=true;product=mitotic regulator LTE1;start_range=.,101565;transcript_id=NM_001178169.1
Chr01 RefSeq CDS 101565 105872 . - 0 ID=cds-NP_009378.1;Parent=rna-NM_001178169.1;Dbxref=SGD:S000000022,GeneID:851209,Genbank:NP_009378.1;Name=NP_009378.1;Note=Protein similar to GDP/GTP exchange factors%3B without detectable GEF activity%3B required for asymmetric localization of Bfa1p at daughter-directed spindle pole bodies and for mitotic exit at low temperatures;experiment=EXISTENCE:direct assay:GO:0005933 cellular bud [PMID:12782684],EXISTENCE:genetic interaction:GO:0016192 vesicle-mediated transport [PMID:17121813],EXISTENCE:mutant phenotype:GO:0031536 positive regulation of exit from mitosis [PMID:27798238],EXISTENCE:mutant phenotype:GO:0061510 asymmetric protein localization to new mitotic spindle pole body [PMID:19948498];gbkey=CDS;gene=LTE1;locus_tag=YAL024C;product=mitotic regulator LTE1;protein_id=NP_009378.1
Chr01 RefSeq gene 106272 108551 . - . ID=gene-YAL023C;Dbxref=GeneID:851210;Name=PMT2;end_range=108551,.;gbkey=Gene;gene=PMT2;gene_biotype=protein_coding;gene_synonym=FUN25;locus_tag=YAL023C;partial=true;start_range=.,106272
Chr01 RefSeq mRNA 106272 108551 . - . ID=rna-NM_001178168.1;Parent=gene-YAL023C;Dbxref=GeneID:851210,Genbank:NM_001178168.1;Name=NM_001178168.1;end_range=108551,.;gbkey=mRNA;gene=PMT2;locus_tag=YAL023C;partial=true;product=dolichyl-phosphate-mannose-protein mannosyltransferase PMT2;start_range=.,106272;transcript_id=NM_001178168.1
Chr01 RefSeq exon 106272 108551 . - . ID=exon-NM_001178168.1-1;Parent=rna-NM_001178168.1;Dbxref=GeneID:851210,Genbank:NM_001178168.1;end_range=108551,.;gbkey=mRNA;gene=PMT2;locus_tag=YAL023C;partial=true;product=dolichyl-phosphate-mannose-protein mannosyltransferase PMT2;start_range=.,106272;transcript_id=NM_001178168.1
Chr01 RefSeq CDS 106272 108551 . - 0 ID=cds-NP_009379.2;Parent=rna-NM_001178168.1;Dbxref=SGD:S000000021,GeneID:851210,Genbank:NP_009379.2;Name=NP_009379.2;Note=Protein O-mannosyltransferase of the ER membrane%3B transfers mannose residues from dolichyl phosphate-D-mannose to protein serine/threonine residues%3B involved in ER quality control%3B functions as a heterodimer with Pmt2p but can also pair with Pmt5p%3B antifungal drug target%3B PMT2 has a paralog%2C PMT3%2C that arose from the whole genome duplication;experiment=EXISTENCE:direct assay:GO:0004169 dolichyl-phosphate-mannose-protein mannosyltransferase activity [PMID:21956107],EXISTENCE:direct assay:GO:0005783 endoplasmic reticulum [PMID:26928762],EXISTENCE:direct assay:GO:0097582 dolichyl-phosphate-mannose-protein mannosyltransferase Pmt1p-Pmt2p dimer complex [PMID:12551906],EXISTENCE:direct assay:GO:0097584 dolichyl-phosphate-mannose-protein mannosyltransferase Pmt5p-Pmt2p dimer complex [PMID:12551906],EXISTENCE:genetic interaction:GO:0004169 dolichyl-phosphate-mannose-protein mannosyltransferase activity [PMID:21956107|PMID:7852348|PMID:8543034],EXISTENCE:genetic interaction:GO:0032527 protein exit from endoplasmic reticulum [PMID:21147851],EXISTENCE:genetic interaction:GO:0035269 protein O-linked mannosylation [PMID:21231968|PMID:7852348|PMID:8543034],EXISTENCE:genetic interaction:GO:0071712 ER-associated misfolded protein catabolic process [PMID:21147851],EXISTENCE:genetic interaction:GO:1900101 regulation of endoplasmic reticulum unfolded protein response [PMID:21231968|PMID:23704572],EXISTENCE:mutant phenotype:GO:0004169 dolichyl-phosphate-mannose-protein mannosyltransferase activity [PMID:7852348|PMID:8543034],EXISTENCE:mutant phenotype:GO:0006493 protein O-linked glycosylation [PMID:9184828],EXISTENCE:mutant phenotype:GO:0035269 protein O-linked mannosylation [PMID:18182384|PMID:7852348|PMID:8543034],EXISTENCE:mutant phenotype:GO:0071712 ER-associated misfolded protein catabolic process [PMID:18182384],EXISTENCE:mutant phenotype:GO:1900101 regulation of endoplasmic reticulum unfolded protein response [PMID:23704572],EXISTENCE:physical interaction:GO:0097582 dolichyl-phosphate-mannose-protein mannosyltransferase Pmt1p-Pmt2p dimer complex [PMID:21956107|PMID:8543034];gbkey=CDS;gene=PMT2;locus_tag=YAL023C;product=dolichyl-phosphate-mannose-protein mannosyltransferase PMT2;protein_id=NP_009379.2
Chr01 RefSeq gene 108877 110430 . - . ID=gene-YAL022C;Dbxref=GeneID:851211;Name=FUN26;end_range=110430,.;gbkey=Gene;gene=FUN26;gene_biotype=protein_coding;locus_tag=YAL022C;partial=true;start_range=.,108877
Chr01 RefSeq mRNA 108877 110430 . - . ID=rna-NM_001178167.1;Parent=gene-YAL022C;Dbxref=GeneID:851211,Genbank:NM_001178167.1;Name=NM_001178167.1;end_range=110430,.;gbkey=mRNA;gene=FUN26;locus_tag=YAL022C;partial=true;product=nucleoside transmembrane transporter FUN26;start_range=.,108877;transcript_id=NM_001178167.1
Chr01 RefSeq exon 108877 110430 . - . ID=exon-NM_001178167.1-1;Parent=rna-NM_001178167.1;Dbxref=GeneID:851211,Genbank:NM_001178167.1;end_range=110430,.;gbkey=mRNA;gene=FUN26;locus_tag=YAL022C;partial=true;product=nucleoside transmembrane transporter FUN26;start_range=.,108877;transcript_id=NM_001178167.1
Chr01 RefSeq CDS 108877 110430 . - 0 ID=cds-NP_009380.1;Parent=rna-NM_001178167.1;Dbxref=SGD:S000000020,GeneID:851211,Genbank:NP_009380.1;Name=NP_009380.1;Note=High affinity%2C broad selectivity%2C nucleoside/nucleobase transporter%3B vacuolar membrane localized transporter which may regulate the balance of nicotinamide riboside (NmR) levels between the cytosol and vacuole%2C contributing to salvage of NmR for use in cytosolic NAD+ synthesis%3B equilibrative nucleoside transporter (ENT) family member;experiment=EXISTENCE:direct assay:GO:0000329 fungal-type vacuole membrane [PMID:21349851|PMID:19001347|PMID:26928762],EXISTENCE:direct assay:GO:0005337 nucleoside transmembrane transporter activity [PMID:10827169|PMID:25035431],EXISTENCE:direct assay:GO:0015205 nucleobase transmembrane transporter activity [PMID:25035431],EXISTENCE:direct assay:GO:0015851 nucleobase transport [PMID:25035431],EXISTENCE:direct assay:GO:0015858 nucleoside transport [PMID:10827169|PMID:25035431],EXISTENCE:direct assay:GO:0055085 transmembrane transport [PMID:10827169],EXISTENCE:mutant phenotype:GO:0034257 nicotinamide riboside transmembrane transporter activity [PMID:21349851],EXISTENCE:mutant phenotype:GO:0034258 nicotinamide riboside transport [PMID:21349851];gbkey=CDS;gene=FUN26;locus_tag=YAL022C;product=nucleoside transmembrane transporter FUN26;protein_id=NP_009380.1
Chr01 RefSeq gene 110846 113359 . - . ID=gene-YAL021C;Dbxref=GeneID:851212;Name=CCR4;end_range=113359,.;gbkey=Gene;gene=CCR4;gene_biotype=protein_coding;gene_synonym=FUN27,NUT21;locus_tag=YAL021C;partial=true;start_range=.,110846
Chr01 RefSeq mRNA 110846 113359 . - . ID=rna-NM_001178166.1;Parent=gene-YAL021C;Dbxref=GeneID:851212,Genbank:NM_001178166.1;Name=NM_001178166.1;end_range=113359,.;gbkey=mRNA;gene=CCR4;locus_tag=YAL021C;partial=true;product=CCR4-NOT core exoribonuclease subunit CCR4;start_range=.,110846;transcript_id=NM_001178166.1
Chr01 RefSeq exon 110846 113359 . - . ID=exon-NM_001178166.1-1;Parent=rna-NM_001178166.1;Dbxref=GeneID:851212,Genbank:NM_001178166.1;end_range=113359,.;gbkey=mRNA;gene=CCR4;locus_tag=YAL021C;partial=true;product=CCR4-NOT core exoribonuclease subunit CCR4;start_range=.,110846;transcript_id=NM_001178166.1
Chr01 RefSeq CDS 110846 113359 . - 0 ID=cds-NP_009381.1;Parent=rna-NM_001178166.1;Dbxref=SGD:S000000019,GeneID:851212,Genbank:NP_009381.1;Name=NP_009381.1;Note=Component of the CCR4-NOT transcriptional complex%3B CCR4-NOT is involved in regulation of gene expression%3B component of the major cytoplasmic deadenylase%2C which is involved in mRNA poly(A) tail shortening;experiment=EXISTENCE:direct assay:GO:0000175 3'-5'-exoribonuclease activity [PMID:11889048],EXISTENCE:direct assay:GO:0000288 nuclear-transcribed mRNA catabolic process%2C deadenylation-dependent decay [PMID:11889048],EXISTENCE:direct assay:GO:0000289 nuclear-transcribed mRNA poly(A) tail shortening [PMID:11889048],EXISTENCE:direct assay:GO:0000932 P-body [PMID:18611963],EXISTENCE:direct assay:GO:0005737 cytoplasm [PMID:11889048],EXISTENCE:direct assay:GO:0030015 CCR4-NOT core complex [PMID:10490603],EXISTENCE:direct assay:GO:0032968 positive regulation of transcription elongation from RNA polymerase II promoter [PMID:21406554],EXISTENCE:genetic interaction:GO:0000076 DNA replication checkpoint signaling [PMID:17158920],EXISTENCE:genetic interaction:GO:0000175 3'-5'-exoribonuclease activity [PMID:11889048],EXISTENCE:genetic interaction:GO:0006260 DNA replication [PMID:17158920],EXISTENCE:genetic interaction:GO:0006368 transcription elongation from RNA polymerase II promoter [PMID:11404327],EXISTENCE:genetic interaction:GO:0048478 replication fork protection [PMID:17158920],EXISTENCE:mutant phenotype:GO:0000175 3'-5'-exoribonuclease activity [PMID:11239395|PMID:11889048],EXISTENCE:mutant phenotype:GO:0000288 nuclear-transcribed mRNA catabolic process%2C deadenylation-dependent decay [PMID:11889048],EXISTENCE:mutant phenotype:GO:0000289 nuclear-transcribed mRNA poly(A) tail shortening [PMID:11410650|PMID:17158920],EXISTENCE:mutant phenotype:GO:0006368 transcription elongation from RNA polymerase II promoter [PMID:11404327],EXISTENCE:mutant phenotype:GO:0007089 traversing start control point of mitotic cell cycle [PMID:15075273],EXISTENCE:physical interaction:GO:0006357 regulation of transcription by RNA polymerase II [PMID:10490603],EXISTENCE:physical interaction:GO:0016593 Cdc73/Paf1 complex [PMID:9891041];gbkey=CDS;gene=CCR4;locus_tag=YAL021C;product=CCR4-NOT core exoribonuclease subunit CCR4;protein_id=NP_009381.1
Chr01 RefSeq gene 113614 114615 . - . ID=gene-YAL020C;Dbxref=GeneID:851213;Name=ATS1;end_range=114615,.;gbkey=Gene;gene=ATS1;gene_biotype=protein_coding;gene_synonym=FUN28,KTI13;locus_tag=YAL020C;partial=true;start_range=.,113614
Chr01 RefSeq mRNA 113614 114615 . - . ID=rna-NM_001178165.2;Parent=gene-YAL020C;Dbxref=GeneID:851213,Genbank:NM_001178165.2;Name=NM_001178165.2;end_range=114615,.;gbkey=mRNA;gene=ATS1;locus_tag=YAL020C;partial=true;product=Ats1p;start_range=.,113614;transcript_id=NM_001178165.2
Chr01 RefSeq exon 113614 114615 . - . ID=exon-NM_001178165.2-1;Parent=rna-NM_001178165.2;Dbxref=GeneID:851213,Genbank:NM_001178165.2;end_range=114615,.;gbkey=mRNA;gene=ATS1;locus_tag=YAL020C;partial=true;product=Ats1p;start_range=.,113614;transcript_id=NM_001178165.2
Chr01 RefSeq CDS 113614 114615 . - 0 ID=cds-NP_009382.2;Parent=rna-NM_001178165.2;Dbxref=SGD:S000000018,GeneID:851213,Genbank:NP_009382.2;Name=NP_009382.2;Note=Protein required for modification of wobble nucleosides in tRNA%3B acts with Elongator complex%2C Kti11p%2C and Kti12p%3B has a potential role in regulatory interactions between microtubules and the cell cycle%3B forms a stable heterodimer with Kti11p;experiment=EXISTENCE:direct assay:GO:0005737 cytoplasm [PMID:18466297],EXISTENCE:mutant phenotype:GO:0002098 tRNA wobble uridine modification [PMID:18755837];gbkey=CDS;gene=ATS1;locus_tag=YAL020C;product=Ats1p;protein_id=NP_009382.2
Chr01 RefSeq gene 114919 118314 . + . ID=gene-YAL019W;Dbxref=GeneID:851214;Name=FUN30;end_range=118314,.;gbkey=Gene;gene=FUN30;gene_biotype=protein_coding;locus_tag=YAL019W;partial=true;start_range=.,114919
Chr01 RefSeq mRNA 114919 118314 . + . ID=rna-NM_001178164.1;Parent=gene-YAL019W;Dbxref=GeneID:851214,Genbank:NM_001178164.1;Name=NM_001178164.1;end_range=118314,.;gbkey=mRNA;gene=FUN30;locus_tag=YAL019W;partial=true;product=DNA-dependent ATPase FUN30;start_range=.,114919;transcript_id=NM_001178164.1
Chr01 RefSeq exon 114919 118314 . + . ID=exon-NM_001178164.1-1;Parent=rna-NM_001178164.1;Dbxref=GeneID:851214,Genbank:NM_001178164.1;end_range=118314,.;gbkey=mRNA;gene=FUN30;locus_tag=YAL019W;partial=true;product=DNA-dependent ATPase FUN30;start_range=.,114919;transcript_id=NM_001178164.1
Chr01 RefSeq CDS 114919 118314 . + 0 ID=cds-NP_009383.1;Parent=rna-NM_001178164.1;Dbxref=SGD:S000000017,GeneID:851214,Genbank:NP_009383.1;Name=NP_009383.1;Note=Snf2p family member with ATP-dependent chromatin remodeling activity%3B has a role in silencing at the mating type locus%2C telomeres and centromeres%3B enriched at centromeres and is required for correct chromatin structure around centromeres%2C as well as at the boundary element of the silent HMR%3B recruited to DNA double-strand breaks (DSBs) where it promotes 5' strand resection of DSBs%3B potential Cdc28p substrate;experiment=EXISTENCE:direct assay:GO:0000775 chromosome%2C centromeric region [PMID:23028372],EXISTENCE:direct assay:GO:0003677 DNA binding [PMID:20075079],EXISTENCE:direct assay:GO:0003682 chromatin binding [PMID:20075079],EXISTENCE:direct assay:GO:0005634 nucleus [PMID:14562095|PMID:22842922],EXISTENCE:direct assay:GO:0005739 mitochondrion [PMID:14576278|PMID:16823961],EXISTENCE:direct assay:GO:0008094 ATPase%2C acting on DNA [PMID:20075079|PMID:23779104],EXISTENCE:direct assay:GO:0031934 mating-type region heterochromatin [PMID:19956593],EXISTENCE:direct assay:GO:0042766 nucleosome mobilization [PMID:23779104],EXISTENCE:genetic interaction:GO:0070829 heterochromatin maintenance [PMID:21388962],EXISTENCE:mutant phenotype:GO:0000122 negative regulation of transcription by RNA polymerase II [PMID:23779104],EXISTENCE:mutant phenotype:GO:0000183 rDNA heterochromatin assembly [PMID:19956593],EXISTENCE:mutant phenotype:GO:0000729 DNA double-strand break processing [PMID:22960743|PMID:22960744],EXISTENCE:mutant phenotype:GO:0006338 chromatin remodeling [PMID:23779104|PMID:33141948],EXISTENCE:mutant phenotype:GO:0006348 chromatin silencing at telomere [PMID:19956593],EXISTENCE:mutant phenotype:GO:0008094 ATPase%2C acting on DNA [PMID:19956593],EXISTENCE:mutant phenotype:GO:0016584 nucleosome positioning [PMID:23779104],EXISTENCE:mutant phenotype:GO:0030466 silent mating-type cassette heterochromatin assembly [PMID:19956593],EXISTENCE:mutant phenotype:GO:0031507 heterochromatin assembly [PMID:21388962],EXISTENCE:mutant phenotype:GO:0033120 positive regulation of RNA splicing [PMID:32234239],EXISTENCE:mutant phenotype:GO:0043044 ATP-dependent chromatin remodeling [PMID:20075079],EXISTENCE:mutant phenotype:GO:0070829 heterochromatin maintenance [PMID:21388962];gbkey=CDS;gene=FUN30;locus_tag=YAL019W;product=DNA-dependent ATPase FUN30;protein_id=NP_009383.1
Chr01 RefSeq gene 118564 119541 . - . ID=gene-YAL018C;Dbxref=GeneID:851215;Name=LDS1;end_range=119541,.;gbkey=Gene;gene=LDS1;gene_biotype=protein_coding;locus_tag=YAL018C;partial=true;start_range=.,118564
Chr01 RefSeq mRNA 118564 119541 . - . ID=rna-NM_001178163.1;Parent=gene-YAL018C;Dbxref=GeneID:851215,Genbank:NM_001178163.1;Name=NM_001178163.1;end_range=119541,.;gbkey=mRNA;gene=LDS1;locus_tag=YAL018C;partial=true;product=Lds1p;start_range=.,118564;transcript_id=NM_001178163.1
Chr01 RefSeq exon 118564 119541 . - . ID=exon-NM_001178163.1-1;Parent=rna-NM_001178163.1;Dbxref=GeneID:851215,Genbank:NM_001178163.1;end_range=119541,.;gbkey=mRNA;gene=LDS1;locus_tag=YAL018C;partial=true;product=Lds1p;start_range=.,118564;transcript_id=NM_001178163.1
Chr01 RefSeq CDS 118564 119541 . - 0 ID=cds-NP_009384.1;Parent=rna-NM_001178163.1;Dbxref=SGD:S000000016,GeneID:851215,Genbank:NP_009384.1;Name=NP_009384.1;Note=Protein Involved in spore wall assembly%3B localizes to lipid droplets found on or outside of the prospore membrane%3B shares similarity with Lds2p and Rrt8p%2C and a strain mutant for all 3 genes exhibits reduced dityrosine fluorescence relative to the single mutants;experiment=EXISTENCE:direct assay:GO:0005619 ascospore wall [PMID:23966878],EXISTENCE:direct assay:GO:0005628 prospore membrane [PMID:23966878],EXISTENCE:direct assay:GO:0005811 lipid droplet [PMID:24390141],EXISTENCE:genetic interaction:GO:0030476 ascospore wall assembly [PMID:23966878];gbkey=CDS;gene=LDS1;locus_tag=YAL018C;product=Lds1p;protein_id=NP_009384.1
Chr01 RefSeq gene 120225 124295 . + . ID=gene-YAL017W;Dbxref=GeneID:851216;Name=PSK1;end_range=124295,.;gbkey=Gene;gene=PSK1;gene_biotype=protein_coding;gene_synonym=FUN31;locus_tag=YAL017W;partial=true;start_range=.,120225
Chr01 RefSeq mRNA 120225 124295 . + . ID=rna-NM_001178162.2;Parent=gene-YAL017W;Dbxref=GeneID:851216,Genbank:NM_001178162.2;Name=NM_001178162.2;end_range=124295,.;gbkey=mRNA;gene=PSK1;locus_tag=YAL017W;partial=true;product=serine/threonine protein kinase PSK1;start_range=.,120225;transcript_id=NM_001178162.2
Chr01 RefSeq exon 120225 124295 . + . ID=exon-NM_001178162.2-1;Parent=rna-NM_001178162.2;Dbxref=GeneID:851216,Genbank:NM_001178162.2;end_range=124295,.;gbkey=mRNA;gene=PSK1;locus_tag=YAL017W;partial=true;product=serine/threonine protein kinase PSK1;start_range=.,120225;transcript_id=NM_001178162.2
Chr01 RefSeq CDS 120225 124295 . + 0 ID=cds-NP_009385.2;Parent=rna-NM_001178162.2;Dbxref=SGD:S000000015,GeneID:851216,Genbank:NP_009385.2;Name=NP_009385.2;Note=PAS domain-containing serine/threonine protein kinase%3B coordinately regulates protein synthesis and carbohydrate metabolism and storage in response to a unknown metabolite that reflects nutritional status%3B PSK1 has a paralog%2C PSK2%2C that arose from the whole genome duplication;experiment=EXISTENCE:direct assay:GO:0004672 protein kinase activity [PMID:16319894],EXISTENCE:direct assay:GO:0005737 cytoplasm [PMID:22289182|PMID:14562095],EXISTENCE:direct assay:GO:0006468 protein phosphorylation [PMID:16319894],EXISTENCE:genetic interaction:GO:0060917 regulation of (1->6)-beta-D-glucan biosynthetic process [PMID:17531808],EXISTENCE:mutant phenotype:GO:0004674 protein serine/threonine kinase activity [PMID:12372297],EXISTENCE:mutant phenotype:GO:0006468 protein phosphorylation [PMID:12372297],EXISTENCE:mutant phenotype:GO:0045719 negative regulation of glycogen biosynthetic process [PMID:12372297];gbkey=CDS;gene=PSK1;locus_tag=YAL017W;product=serine/threonine protein kinase PSK1;protein_id=NP_009385.2
Chr01 RefSeq origin_of_replication 124349 124597 . + . ID=id-Chr01:124349..124597;Dbxref=SGD:S000118319;Note=ARS107%3B Autonomously Replicating Sequence;gbkey=rep_origin
Chr01 RefSeq gene 124879 126786 . + . ID=gene-YAL016W;Dbxref=GeneID:851217;Name=TPD3;end_range=126786,.;gbkey=Gene;gene=TPD3;gene_biotype=protein_coding;gene_synonym=FUN32;locus_tag=YAL016W;partial=true;start_range=.,124879
Chr01 RefSeq mRNA 124879 126786 . + . ID=rna-NM_001178161.1;Parent=gene-YAL016W;Dbxref=GeneID:851217,Genbank:NM_001178161.1;Name=NM_001178161.1;end_range=126786,.;gbkey=mRNA;gene=TPD3;locus_tag=YAL016W;partial=true;product=protein phosphatase 2A structural subunit TPD3;start_range=.,124879;transcript_id=NM_001178161.1
Chr01 RefSeq exon 124879 126786 . + . ID=exon-NM_001178161.1-1;Parent=rna-NM_001178161.1;Dbxref=GeneID:851217,Genbank:NM_001178161.1;end_range=126786,.;gbkey=mRNA;gene=TPD3;locus_tag=YAL016W;partial=true;product=protein phosphatase 2A structural subunit TPD3;start_range=.,124879;transcript_id=NM_001178161.1
Chr01 RefSeq CDS 124879 126786 . + 0 ID=cds-NP_009386.1;Parent=rna-NM_001178161.1;Dbxref=SGD:S000000014,GeneID:851217,Genbank:NP_009386.1;Name=NP_009386.1;Note=Regulatory subunit A of the heterotrimeric PP2A complex%3B the heterotrimeric protein phosphatase 2A (PP2A) complex also contains regulatory subunit Cdc55p and either catalytic subunit Pph21p or Pph22p%3B required for cell morphogenesis and transcription by RNA polymerase III;experiment=EXISTENCE:direct assay:GO:0000159 protein phosphatase type 2A complex [PMID:17550305|PMID:8600023],EXISTENCE:direct assay:GO:0005634 nucleus [PMID:12388751],EXISTENCE:direct assay:GO:0005737 cytoplasm [PMID:12388751],EXISTENCE:direct assay:GO:0005816 spindle pole body [PMID:12388751],EXISTENCE:direct assay:GO:0005934 cellular bud tip [PMID:12388751],EXISTENCE:direct assay:GO:0005935 cellular bud neck [PMID:12388751],EXISTENCE:direct assay:GO:0043332 mating projection tip [PMID:12388751],EXISTENCE:mutant phenotype:GO:0004722 protein serine/threonine phosphatase activity [PMID:17550305],EXISTENCE:mutant phenotype:GO:0006417 regulation of translation [PMID:10329624],EXISTENCE:mutant phenotype:GO:0007094 mitotic spindle assembly checkpoint signaling [PMID:9001215];gbkey=CDS;gene=TPD3;locus_tag=YAL016W;product=protein phosphatase 2A structural subunit TPD3;protein_id=NP_009386.1
Chr01 RefSeq gene 126903 128102 . - . ID=gene-YAL015C;Dbxref=GeneID:851218;Name=NTG1;end_range=128102,.;gbkey=Gene;gene=NTG1;gene_biotype=protein_coding;gene_synonym=FUN33,ogg2,SCR1;locus_tag=YAL015C;partial=true;start_range=.,126903
Chr01 RefSeq mRNA 126903 128102 . - . ID=rna-NM_001178160.1;Parent=gene-YAL015C;Dbxref=GeneID:851218,Genbank:NM_001178160.1;Name=NM_001178160.1;end_range=128102,.;gbkey=mRNA;gene=NTG1;locus_tag=YAL015C;partial=true;product=bifunctional N-glycosylase/AP lyase NTG1;start_range=.,126903;transcript_id=NM_001178160.1
Chr01 RefSeq exon 126903 128102 . - . ID=exon-NM_001178160.1-1;Parent=rna-NM_001178160.1;Dbxref=GeneID:851218,Genbank:NM_001178160.1;end_range=128102,.;gbkey=mRNA;gene=NTG1;locus_tag=YAL015C;partial=true;product=bifunctional N-glycosylase/AP lyase NTG1;start_range=.,126903;transcript_id=NM_001178160.1
Chr01 RefSeq CDS 126903 128102 . - 0 ID=cds-NP_009387.1;Parent=rna-NM_001178160.1;Dbxref=SGD:S000000013,GeneID:851218,Genbank:NP_009387.1;Name=NP_009387.1;Note=DNA N-glycosylase and apurinic/apyrimidinic (AP) lyase%3B involved in base excision repair%3B acts in both nucleus and mitochondrion%3B creates a double-strand break at mtDNA origins that stimulates replication in response to oxidative stress%3B required for maintaining mitochondrial genome integrity%3B NTG1 has a paralog%2C NTG2%2C that arose from the whole genome duplication;experiment=EXISTENCE:direct assay:GO:0000703 oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity [PMID:9020769],EXISTENCE:direct assay:GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity [PMID:14500818],EXISTENCE:direct assay:GO:0005634 nucleus [PMID:10207101|PMID:19029246|PMID:24034606],EXISTENCE:direct assay:GO:0005739 mitochondrion [PMID:10207101|PMID:19029246|PMID:24034606|PMID:14576278|PMID:16823961],EXISTENCE:direct assay:GO:0006281 DNA repair [PMID:8855249],EXISTENCE:direct assay:GO:0006284 base-excision repair [PMID:14500818],EXISTENCE:direct assay:GO:0006285 base-excision repair%2C AP site formation [PMID:9826748],EXISTENCE:direct assay:GO:0008534 oxidized purine nucleobase lesion DNA N-glycosylase activity [PMID:8855249],EXISTENCE:mutant phenotype:GO:0034599 cellular response to oxidative stress [PMID:19074198],EXISTENCE:mutant phenotype:GO:0090297 positive regulation of mitochondrial DNA replication [PMID:17116696|PMID:19074198];gbkey=CDS;gene=NTG1;locus_tag=YAL015C;product=bifunctional N-glycosylase/AP lyase NTG1;protein_id=NP_009387.1
Chr01 RefSeq gene 128252 129019 . - . ID=gene-YAL014C;Dbxref=GeneID:851219;Name=SYN8;end_range=129019,.;gbkey=Gene;gene=SYN8;gene_biotype=protein_coding;gene_synonym=SLT2,UIP2;locus_tag=YAL014C;partial=true;start_range=.,128252
Chr01 RefSeq mRNA 128252 129019 . - . ID=rna-NM_001178159.1;Parent=gene-YAL014C;Dbxref=GeneID:851219,Genbank:NM_001178159.1;Name=NM_001178159.1;end_range=129019,.;gbkey=mRNA;gene=SYN8;locus_tag=YAL014C;partial=true;product=syntaxin;start_range=.,128252;transcript_id=NM_001178159.1
Chr01 RefSeq exon 128252 129019 . - . ID=exon-NM_001178159.1-1;Parent=rna-NM_001178159.1;Dbxref=GeneID:851219,Genbank:NM_001178159.1;end_range=129019,.;gbkey=mRNA;gene=SYN8;locus_tag=YAL014C;partial=true;product=syntaxin;start_range=.,128252;transcript_id=NM_001178159.1
Chr01 RefSeq CDS 128252 129019 . - 0 ID=cds-NP_009388.2;Parent=rna-NM_001178159.1;Dbxref=SGD:S000000012,GeneID:851219,Genbank:NP_009388.2;Name=NP_009388.2;Note=Endosomal SNARE related to mammalian syntaxin 8;experiment=EXISTENCE:direct assay:GO:0005484 SNAP receptor activity [PMID:12453154],EXISTENCE:direct assay:GO:0005768 endosome [PMID:12453154],EXISTENCE:mutant phenotype:GO:0006896 Golgi to vacuole transport [PMID:12453154],EXISTENCE:physical interaction:GO:0006896 Golgi to vacuole transport [PMID:12453154];gbkey=CDS;gene=SYN8;locus_tag=YAL014C;product=syntaxin;protein_id=NP_009388.2
Chr01 RefSeq gene 129270 130487 . + . ID=gene-YAL013W;Dbxref=GeneID:851220;Name=DEP1;end_range=130487,.;gbkey=Gene;gene=DEP1;gene_biotype=protein_coding;gene_synonym=FUN54;locus_tag=YAL013W;partial=true;start_range=.,129270
Chr01 RefSeq mRNA 129270 130487 . + . ID=rna-NM_001178158.2;Parent=gene-YAL013W;Dbxref=GeneID:851220,Genbank:NM_001178158.2;Name=NM_001178158.2;end_range=130487,.;gbkey=mRNA;gene=DEP1;locus_tag=YAL013W;partial=true;product=Rpd3L histone deacetylase complex subunit DEP1;start_range=.,129270;transcript_id=NM_001178158.2
Chr01 RefSeq exon 129270 130487 . + . ID=exon-NM_001178158.2-1;Parent=rna-NM_001178158.2;Dbxref=GeneID:851220,Genbank:NM_001178158.2;end_range=130487,.;gbkey=mRNA;gene=DEP1;locus_tag=YAL013W;partial=true;product=Rpd3L histone deacetylase complex subunit DEP1;start_range=.,129270;transcript_id=NM_001178158.2
Chr01 RefSeq CDS 129270 130487 . + 0 ID=cds-NP_009389.3;Parent=rna-NM_001178158.2;Dbxref=SGD:S000000011,GeneID:851220,Genbank:NP_009389.3;Name=NP_009389.3;Note=Component of the Rpd3L histone deacetylase complex%3B required for diauxic shift-induced histone H2B deposition onto rDNA genes%3B transcriptional modulator involved in regulation of structural phospholipid biosynthesis genes and metabolically unrelated genes%2C as well as maintenance of telomeres%2C mating efficiency%2C and sporulation;experiment=EXISTENCE:direct assay:GO:0031939 negative regulation of chromatin silencing at telomere [PMID:20133733],EXISTENCE:direct assay:GO:0033698 Rpd3L complex [PMID:16286007|PMID:16286008|PMID:16314178|PMID:19040720],EXISTENCE:direct assay:GO:0070210 Rpd3L-Expanded complex [PMID:19040720],EXISTENCE:mutant phenotype:GO:0000122 negative regulation of transcription by RNA polymerase II [PMID:16314178|PMID:24358376|PMID:8056324],EXISTENCE:mutant phenotype:GO:0006357 regulation of transcription by RNA polymerase II [PMID:21646424|PMID:8056324],EXISTENCE:mutant phenotype:GO:0016575 histone deacetylation [PMID:16286007|PMID:16286008|PMID:16314178],EXISTENCE:mutant phenotype:GO:0030174 regulation of DNA-dependent DNA replication initiation [PMID:19417103],EXISTENCE:mutant phenotype:GO:0031939 negative regulation of chromatin silencing at telomere [PMID:16286008|PMID:16314178|PMID:19372273|PMID:19638198],EXISTENCE:mutant phenotype:GO:0045944 positive regulation of transcription by RNA polymerase II [PMID:20398213|PMID:8056324],EXISTENCE:mutant phenotype:GO:0061186 negative regulation of silent mating-type cassette heterochromatin assembly [PMID:16286008],EXISTENCE:mutant phenotype:GO:0061188 negative regulation of ribosomal DNA heterochromatin assembly [PMID:16286008],EXISTENCE:mutant phenotype:GO:0061408 positive regulation of transcription from RNA polymerase II promoter in response to heat stress [PMID:20398213];gbkey=CDS;gene=DEP1;locus_tag=YAL013W;product=Rpd3L histone deacetylase complex subunit DEP1;protein_id=NP_009389.3
Chr01 RefSeq gene 130799 131983 . + . ID=gene-YAL012W;Dbxref=GeneID:851221;Name=CYS3;end_range=131983,.;gbkey=Gene;gene=CYS3;gene_biotype=protein_coding;gene_synonym=CYI1,FUN35,STR1;locus_tag=YAL012W;partial=true;start_range=.,130799
Chr01 RefSeq mRNA 130799 131983 . + . ID=rna-NM_001178157.1;Parent=gene-YAL012W;Dbxref=GeneID:851221,Genbank:NM_001178157.1;Name=NM_001178157.1;end_range=131983,.;gbkey=mRNA;gene=CYS3;locus_tag=YAL012W;partial=true;product=cystathionine gamma-lyase CYS3;start_range=.,130799;transcript_id=NM_001178157.1
Chr01 RefSeq exon 130799 131983 . + . ID=exon-NM_001178157.1-1;Parent=rna-NM_001178157.1;Dbxref=GeneID:851221,Genbank:NM_001178157.1;end_range=131983,.;gbkey=mRNA;gene=CYS3;locus_tag=YAL012W;partial=true;product=cystathionine gamma-lyase CYS3;start_range=.,130799;transcript_id=NM_001178157.1
Chr01 RefSeq CDS 130799 131983 . + 0 ID=cds-NP_009390.1;Parent=rna-NM_001178157.1;Dbxref=SGD:S000000010,GeneID:851221,Genbank:NP_009390.1;Name=NP_009390.1;Note=Cystathionine gamma-lyase%3B catalyzes one of the two reactions involved in the transsulfuration pathway that yields cysteine from homocysteine with the intermediary formation of cystathionine%3B protein abundance increases in response to DNA replication stress;experiment=EXISTENCE:direct assay:GO:0004123 cystathionine gamma-lyase activity [PMID:1577698],EXISTENCE:direct assay:GO:0005634 nucleus [PMID:22842922],EXISTENCE:direct assay:GO:0005737 cytoplasm [PMID:14562095|PMID:22842922],EXISTENCE:direct assay:GO:0047804 cysteine-S-conjugate beta-lyase activity [PMID:29436228],EXISTENCE:direct assay:GO:1904828 positive regulation of hydrogen sulfide biosynthetic process [PMID:31582588],EXISTENCE:mutant phenotype:GO:0004123 cystathionine gamma-lyase activity [PMID:10509018|PMID:8366024],EXISTENCE:mutant phenotype:GO:0019343 cysteine biosynthetic process via cystathionine [PMID:10509018],EXISTENCE:mutant phenotype:GO:0019344 cysteine biosynthetic process [PMID:8366024],EXISTENCE:mutant phenotype:GO:0019346 transsulfuration [PMID:8366024];gbkey=CDS;gene=CYS3;locus_tag=YAL012W;product=cystathionine gamma-lyase CYS3;protein_id=NP_009390.1
Chr01 RefSeq gene 132199 134076 . + . ID=gene-YAL011W;Dbxref=GeneID:851222;Name=SWC3;end_range=134076,.;gbkey=Gene;gene=SWC3;gene_biotype=protein_coding;gene_synonym=SWC1;locus_tag=YAL011W;partial=true;start_range=.,132199
Chr01 RefSeq mRNA 132199 134076 . + . ID=rna-NM_001178156.1;Parent=gene-YAL011W;Dbxref=GeneID:851222,Genbank:NM_001178156.1;Name=NM_001178156.1;end_range=134076,.;gbkey=mRNA;gene=SWC3;locus_tag=YAL011W;partial=true;product=Swc3p;start_range=.,132199;transcript_id=NM_001178156.1
Chr01 RefSeq exon 132199 134076 . + . ID=exon-NM_001178156.1-1;Parent=rna-NM_001178156.1;Dbxref=GeneID:851222,Genbank:NM_001178156.1;end_range=134076,.;gbkey=mRNA;gene=SWC3;locus_tag=YAL011W;partial=true;product=Swc3p;start_range=.,132199;transcript_id=NM_001178156.1
Chr01 RefSeq CDS 132199 134076 . + 0 ID=cds-NP_009391.2;Parent=rna-NM_001178156.1;Dbxref=SGD:S000000009,GeneID:851222,Genbank:NP_009391.2;Name=NP_009391.2;Note=hypothetical protein%3B component of the SWR1 complex%2C which exchanges histone variant H2AZ (Htz1p) for chromatin-bound histone H2A%3B required for formation of nuclear-associated array of smooth endoplasmic reticulum known as karmellae;experiment=EXISTENCE:direct assay:GO:0000812 Swr1 complex [PMID:14645854|PMID:14690608],EXISTENCE:direct assay:GO:0005634 nucleus [PMID:14562095],EXISTENCE:direct assay:GO:0005739 mitochondrion [PMID:14576278|PMID:16823961],EXISTENCE:direct assay:GO:0006338 chromatin remodeling [PMID:14645854],EXISTENCE:mutant phenotype:GO:0006338 chromatin remodeling [PMID:14690608],EXISTENCE:mutant phenotype:GO:0007029 endoplasmic reticulum organization [PMID:12868057],EXISTENCE:physical interaction:GO:0043486 histone exchange [PMID:16299513];gbkey=CDS;gene=SWC3;locus_tag=YAL011W;product=Swc3p;protein_id=NP_009391.2
Chr01 RefSeq gene 134184 135665 . - . ID=gene-YAL010C;Dbxref=GeneID:851223;Name=MDM10;end_range=135665,.;gbkey=Gene;gene=MDM10;gene_biotype=protein_coding;gene_synonym=FUN37;locus_tag=YAL010C;partial=true;start_range=.,134184
Chr01 RefSeq mRNA 134184 135665 . - . ID=rna-NM_001178155.2;Parent=gene-YAL010C;Dbxref=GeneID:851223,Genbank:NM_001178155.2;Name=NM_001178155.2;end_range=135665,.;gbkey=mRNA;gene=MDM10;locus_tag=YAL010C;partial=true;product=Mdm10p;start_range=.,134184;transcript_id=NM_001178155.2
Chr01 RefSeq exon 134184 135665 . - . ID=exon-NM_001178155.2-1;Parent=rna-NM_001178155.2;Dbxref=GeneID:851223,Genbank:NM_001178155.2;end_range=135665,.;gbkey=mRNA;gene=MDM10;locus_tag=YAL010C;partial=true;product=Mdm10p;start_range=.,134184;transcript_id=NM_001178155.2
Chr01 RefSeq CDS 134184 135665 . - 0 ID=cds-NP_009392.2;Parent=rna-NM_001178155.2;Dbxref=SGD:S000000008,GeneID:851223,Genbank:NP_009392.2;Name=NP_009392.2;Note=Subunit of both the ERMES and the SAM complex%3B component of ERMES complex which acts as a molecular tether between the mitochondria and the ER%2C necessary for efficient phospholipid exchange between organelles and for mitophagy%3B SAM/TOB complex component that functions in the assembly of outer membrane beta-barrel proteins%3B involved in mitochondrial inheritance and morphology%3B ERMES complex is often co-localized with peroxisomes and concentrated areas of pyruvate dehydrogenase;experiment=EXISTENCE:direct assay:GO:0005741 mitochondrial outer membrane [PMID:16407407],EXISTENCE:genetic interaction:GO:0015914 phospholipid transport [PMID:19556461],EXISTENCE:mutant phenotype:GO:0007005 mitochondrion organization [PMID:19556461],EXISTENCE:mutant phenotype:GO:0045040 protein insertion into mitochondrial outer membrane [PMID:17410204],EXISTENCE:mutant phenotype:GO:0051654 establishment of mitochondrion localization [PMID:13679517],EXISTENCE:mutant phenotype:GO:0070096 mitochondrial outer membrane translocase complex assembly [PMID:15239954|PMID:20026336],EXISTENCE:mutant phenotype:GO:1990456 mitochondrion-endoplasmic reticulum membrane tethering [PMID:19556461],EXISTENCE:physical interaction:GO:0001401 SAM complex [PMID:17410204],EXISTENCE:physical interaction:GO:0032865 ERMES complex [PMID:13679517|PMID:17410204],EXISTENCE:physical interaction:GO:0070096 mitochondrial outer membrane translocase complex assembly [PMID:20026336];gbkey=CDS;gene=MDM10;locus_tag=YAL010C;product=Mdm10p;protein_id=NP_009392.2
Chr01 RefSeq gene 135854 136633 . + . ID=gene-YAL009W;Dbxref=GeneID:851224;Name=SPO7;end_range=136633,.;gbkey=Gene;gene=SPO7;gene_biotype=protein_coding;locus_tag=YAL009W;partial=true;start_range=.,135854
Chr01 RefSeq mRNA 135854 136633 . + . ID=rna-NM_001178154.1;Parent=gene-YAL009W;Dbxref=GeneID:851224,Genbank:NM_001178154.1;Name=NM_001178154.1;end_range=136633,.;gbkey=mRNA;gene=SPO7;locus_tag=YAL009W;partial=true;product=Nem1-Spo7 phosphatase regulatory subunit SPO7;start_range=.,135854;transcript_id=NM_001178154.1
Chr01 RefSeq exon 135854 136633 . + . ID=exon-NM_001178154.1-1;Parent=rna-NM_001178154.1;Dbxref=GeneID:851224,Genbank:NM_001178154.1;end_range=136633,.;gbkey=mRNA;gene=SPO7;locus_tag=YAL009W;partial=true;product=Nem1-Spo7 phosphatase regulatory subunit SPO7;start_range=.,135854;transcript_id=NM_001178154.1
Chr01 RefSeq CDS 135854 136633 . + 0 ID=cds-NP_009393.1;Parent=rna-NM_001178154.1;Dbxref=SGD:S000000007,GeneID:851224,Genbank:NP_009393.1;Name=NP_009393.1;Note=Putative regulatory subunit of Nem1p-Spo7p phosphatase holoenzyme%3B regulates nuclear growth by controlling phospholipid biosynthesis%2C required for normal nuclear envelope morphology%2C premeiotic replication%2C and sporulation;experiment=EXISTENCE:direct assay:GO:0004721 phosphoprotein phosphatase activity [PMID:15889145|PMID:25359770],EXISTENCE:direct assay:GO:0005783 endoplasmic reticulum [PMID:26928762],EXISTENCE:direct assay:GO:0006470 protein dephosphorylation [PMID:25359770],EXISTENCE:direct assay:GO:0016021 integral component of membrane [PMID:9822591],EXISTENCE:direct assay:GO:0061709 reticulophagy [PMID:31802527],EXISTENCE:direct assay:GO:1903740 positive regulation of phosphatidate phosphatase activity [PMID:25359770],EXISTENCE:genetic interaction:GO:0071072 negative regulation of phospholipid biosynthetic process [PMID:15889145],EXISTENCE:mutant phenotype:GO:0006998 nuclear envelope organization [PMID:9822591],EXISTENCE:mutant phenotype:GO:0071071 regulation of phospholipid biosynthetic process [PMID:30201607],EXISTENCE:physical interaction:GO:0071595 Nem1-Spo7 phosphatase complex [PMID:9822591];gbkey=CDS;gene=SPO7;locus_tag=YAL009W;product=Nem1-Spo7 phosphatase regulatory subunit SPO7;protein_id=NP_009393.1
Chr01 RefSeq gene 136914 137510 . + . ID=gene-YAL008W;Dbxref=GeneID:851225;Name=FUN14;end_range=137510,.;gbkey=Gene;gene=FUN14;gene_biotype=protein_coding;gene_synonym=MCP3;locus_tag=YAL008W;partial=true;start_range=.,136914
Chr01 RefSeq mRNA 136914 137510 . + . ID=rna-NM_001178153.1;Parent=gene-YAL008W;Dbxref=GeneID:851225,Genbank:NM_001178153.1;Name=NM_001178153.1;end_range=137510,.;gbkey=mRNA;gene=FUN14;locus_tag=YAL008W;partial=true;product=Fun14p;start_range=.,136914;transcript_id=NM_001178153.1
Chr01 RefSeq exon 136914 137510 . + . ID=exon-NM_001178153.1-1;Parent=rna-NM_001178153.1;Dbxref=GeneID:851225,Genbank:NM_001178153.1;end_range=137510,.;gbkey=mRNA;gene=FUN14;locus_tag=YAL008W;partial=true;product=Fun14p;start_range=.,136914;transcript_id=NM_001178153.1
Chr01 RefSeq CDS 136914 137510 . + 0 ID=cds-NP_009394.1;Parent=rna-NM_001178153.1;Dbxref=SGD:S000000006,GeneID:851225,Genbank:NP_009394.1;Name=NP_009394.1;Note=Integral mitochondrial outer membrane (MOM) protein%3B dosage suppressor of an MDM10 null that reduces ERMES-related phenotypes%2C such as alterations in mitochondrial morphology%2C protein complex assembly%2C and lipid profile%3B dosage suppressor of MDM12%2C MDM34%2C and MMM1 null mutant growth defects%3B novel mechanism of MOM import involving Tom70p%2C the TOM complex%2C and the TIM23 complex%2C requiring mitochondrial membrane potential and processing by the IMP complex for correct biogenesis;experiment=EXISTENCE:direct assay:GO:0005739 mitochondrion [PMID:14562095|PMID:14576278|PMID:16823961|PMID:24769239],EXISTENCE:direct assay:GO:0005741 mitochondrial outer membrane [PMID:16407407],EXISTENCE:direct assay:GO:0031307 integral component of mitochondrial outer membrane [PMID:27226123],EXISTENCE:genetic interaction:GO:0007005 mitochondrion organization [PMID:27226123],EXISTENCE:genetic interaction:GO:0055091 phospholipid homeostasis [PMID:27226123];gbkey=CDS;gene=FUN14;locus_tag=YAL008W;product=Fun14p;protein_id=NP_009394.1
Chr01 RefSeq gene 137698 138345 . - . ID=gene-YAL007C;Dbxref=GeneID:851226;Name=ERP2;end_range=138345,.;gbkey=Gene;gene=ERP2;gene_biotype=protein_coding;locus_tag=YAL007C;partial=true;start_range=.,137698
Chr01 RefSeq mRNA 137698 138345 . - . ID=rna-NM_001178152.1;Parent=gene-YAL007C;Dbxref=GeneID:851226,Genbank:NM_001178152.1;Name=NM_001178152.1;end_range=138345,.;gbkey=mRNA;gene=ERP2;locus_tag=YAL007C;partial=true;product=Erp2p;start_range=.,137698;transcript_id=NM_001178152.1
Chr01 RefSeq exon 137698 138345 . - . ID=exon-NM_001178152.1-1;Parent=rna-NM_001178152.1;Dbxref=GeneID:851226,Genbank:NM_001178152.1;end_range=138345,.;gbkey=mRNA;gene=ERP2;locus_tag=YAL007C;partial=true;product=Erp2p;start_range=.,137698;transcript_id=NM_001178152.1
Chr01 RefSeq CDS 137698 138345 . - 0 ID=cds-NP_009395.1;Parent=rna-NM_001178152.1;Dbxref=SGD:S000000005,GeneID:851226,Genbank:NP_009395.1;Name=NP_009395.1;Note=Member of the p24 family involved in ER to Golgi transport%3B similar to Emp24p and Erv25p%3B role in misfolded protein quality control%3B forms a heterotrimeric complex with Erp1p%2C Emp24p%2C and Erv25p%3B localized to COPII-coated vesicles%3B ERP2 has a paralog%2C ERP4%2C that arose from the whole genome duplication;experiment=EXISTENCE:direct assay:GO:0005783 endoplasmic reticulum [PMID:26928762],EXISTENCE:direct assay:GO:0030134 COPII-coated ER to Golgi transport vesicle [PMID:11157978],EXISTENCE:mutant phenotype:GO:0006621 protein retention in ER lumen [PMID:10359606],EXISTENCE:mutant phenotype:GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport [PMID:10359606];gbkey=CDS;gene=ERP2;locus_tag=YAL007C;product=Erp2p;protein_id=NP_009395.1
Chr01 RefSeq long_terminal_repeat 138831 138992 . - . ID=id-Chr01:138831..138992;Dbxref=SGD:S000006786;Note=Ty1 LTR;gbkey=repeat_region;rpt_type=long_terminal_repeat
Chr01 RefSeq gene 139152 139254 . + . ID=gene-YNCA0002W;Dbxref=GeneID:851227;Name=TRN1;gbkey=Gene;gene=TRN1;gene_biotype=tRNA;locus_tag=YNCA0002W
Chr01 RefSeq tRNA 139152 139254 . + . ID=rna-YNCA0002W;Parent=gene-YNCA0002W;Dbxref=SGD:S000006680,GeneID:851227;Note=Proline tRNA (tRNA-Pro)%2C predicted by tRNAscan-SE analysis%3B target of K. lactis zymocin%3B can mutate to suppress +1 frameshift mutations in proline codons;experiment=EXISTENCE:curator inference:GO:0005829 cytosol [PMID:9023104],EXISTENCE:curator inference:GO:0006414 translational elongation [PMID:9023104];gbkey=tRNA;gene=TRN1;locus_tag=YNCA0002W;product=tRNA-Pro
Chr01 RefSeq exon 139152 139187 . + . ID=exon-YNCA0002W-1;Parent=rna-YNCA0002W;Dbxref=SGD:S000006680,GeneID:851227;Note=Proline tRNA (tRNA-Pro)%2C predicted by tRNAscan-SE analysis%3B target of K. lactis zymocin%3B can mutate to suppress +1 frameshift mutations in proline codons;experiment=EXISTENCE:curator inference:GO:0005829 cytosol [PMID:9023104],EXISTENCE:curator inference:GO:0006414 translational elongation [PMID:9023104];gbkey=tRNA;gene=TRN1;locus_tag=YNCA0002W;product=tRNA-Pro
Chr01 RefSeq exon 139219 139254 . + . ID=exon-YNCA0002W-2;Parent=rna-YNCA0002W;Dbxref=SGD:S000006680,GeneID:851227;Note=Proline tRNA (tRNA-Pro)%2C predicted by tRNAscan-SE analysis%3B target of K. lactis zymocin%3B can mutate to suppress +1 frameshift mutations in proline codons;experiment=EXISTENCE:curator inference:GO:0005829 cytosol [PMID:9023104],EXISTENCE:curator inference:GO:0006414 translational elongation [PMID:9023104];gbkey=tRNA;gene=TRN1;locus_tag=YNCA0002W;product=tRNA-Pro
Chr01 RefSeq gene 139503 141431 . - . ID=gene-YAL005C;Dbxref=GeneID:851259;Name=SSA1;end_range=141431,.;gbkey=Gene;gene=SSA1;gene_biotype=protein_coding;gene_synonym=YG100;locus_tag=YAL005C;partial=true;start_range=.,139503
Chr01 RefSeq mRNA 139503 141431 . - . ID=rna-NM_001178151.1;Parent=gene-YAL005C;Dbxref=GeneID:851259,Genbank:NM_001178151.1;Name=NM_001178151.1;end_range=141431,.;gbkey=mRNA;gene=SSA1;locus_tag=YAL005C;partial=true;product=Hsp70 family ATPase SSA1;start_range=.,139503;transcript_id=NM_001178151.1
Chr01 RefSeq exon 139503 141431 . - . ID=exon-NM_001178151.1-1;Parent=rna-NM_001178151.1;Dbxref=GeneID:851259,Genbank:NM_001178151.1;end_range=141431,.;gbkey=mRNA;gene=SSA1;locus_tag=YAL005C;partial=true;product=Hsp70 family ATPase SSA1;start_range=.,139503;transcript_id=NM_001178151.1
Chr01 RefSeq CDS 139503 141431 . - 0 ID=cds-NP_009396.2;Parent=rna-NM_001178151.1;Dbxref=SGD:S000000004,GeneID:851259,Genbank:NP_009396.2;Name=NP_009396.2;Note=ATPase involved in protein folding and NLS-directed nuclear transport%3B member of HSP70 family%3B required for ubiquitin-dependent degradation of short-lived proteins%3B forms chaperone complex with Ydj1p%3B localized to nucleus%2C cytoplasm%2C cell wall%3B 98%25 identical to paralog Ssa2p with different functional specificity in propagation of yeast [URE3] prions%2C vacuolar-mediated degradations of gluconeogenesis enzymes%3B general targeting factor of Hsp104p to prion fibrils;experiment=EXISTENCE:direct assay:GO:0000049 tRNA binding [PMID:25853343],EXISTENCE:direct assay:GO:0000209 protein polyubiquitination [PMID:20462952],EXISTENCE:direct assay:GO:0000329 fungal-type vacuole membrane [PMID:10745074],EXISTENCE:direct assay:GO:0005634 nucleus [PMID:10347213|PMID:11914276],EXISTENCE:direct assay:GO:0005737 cytoplasm [PMID:8755907|PMID:11914276],EXISTENCE:direct assay:GO:0005829 cytosol [PMID:26928762],EXISTENCE:direct assay:GO:0005844 polysome [PMID:16413483],EXISTENCE:direct assay:GO:0005886 plasma membrane [PMID:16622836],EXISTENCE:direct assay:GO:0006457 protein folding [PMID:8947547],EXISTENCE:direct assay:GO:0006606 protein import into nucleus [PMID:10347213],EXISTENCE:direct assay:GO:0006616 SRP-dependent cotranslational protein targeting to membrane%2C translocation [PMID:8754838],EXISTENCE:direct assay:GO:0009277 fungal-type cell wall [PMID:8755907],EXISTENCE:direct assay:GO:0016887 ATPase [PMID:18706386|PMID:7737974],EXISTENCE:direct assay:GO:0035617 stress granule disassembly [PMID:24291094],EXISTENCE:direct assay:GO:0042026 protein refolding [PMID:18706386|PMID:9674429],EXISTENCE:direct assay:GO:0051082 unfolded protein binding [PMID:9789005],EXISTENCE:direct assay:GO:0072318 clathrin coat disassembly [PMID:23913685],EXISTENCE:genetic interaction:GO:0006606 protein import into nucleus [PMID:10347213],EXISTENCE:genetic interaction:GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process [PMID:27178214],EXISTENCE:mutant phenotype:GO:0002181 cytoplasmic translation [PMID:11279042],EXISTENCE:mutant phenotype:GO:0006626 protein targeting to mitochondrion [PMID:8754838],EXISTENCE:mutant phenotype:GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process [PMID:27178214],EXISTENCE:mutant phenotype:GO:0072671 mitochondria-associated ubiquitin-dependent protein catabolic process [PMID:32118579],EXISTENCE:mutant phenotype:GO:0090344 negative regulation of cell aging [PMID:27264606];gbkey=CDS;gene=SSA1;locus_tag=YAL005C;product=Hsp70 family ATPase SSA1;protein_id=NP_009396.2
Chr01 RefSeq gene 142174 143160 . + . ID=gene-YAL003W;Dbxref=GeneID:851260;Name=EFB1;end_range=143160,.;gbkey=Gene;gene=EFB1;gene_biotype=protein_coding;gene_synonym=TEF5;locus_tag=YAL003W;partial=true;start_range=.,142174
Chr01 RefSeq mRNA 142174 143160 . + . ID=rna-NM_001178150.1;Parent=gene-YAL003W;Dbxref=GeneID:851260,Genbank:NM_001178150.1;Name=NM_001178150.1;end_range=143160,.;gbkey=mRNA;gene=EFB1;locus_tag=YAL003W;partial=true;product=translation elongation factor 1 subunit beta;start_range=.,142174;transcript_id=NM_001178150.1
Chr01 RefSeq exon 142174 142253 . + . ID=exon-NM_001178150.1-1;Parent=rna-NM_001178150.1;Dbxref=GeneID:851260,Genbank:NM_001178150.1;gbkey=mRNA;gene=EFB1;locus_tag=YAL003W;partial=true;product=translation elongation factor 1 subunit beta;start_range=.,142174;transcript_id=NM_001178150.1
Chr01 RefSeq exon 142620 143160 . + . ID=exon-NM_001178150.1-2;Parent=rna-NM_001178150.1;Dbxref=GeneID:851260,Genbank:NM_001178150.1;end_range=143160,.;gbkey=mRNA;gene=EFB1;locus_tag=YAL003W;partial=true;product=translation elongation factor 1 subunit beta;transcript_id=NM_001178150.1
Chr01 RefSeq CDS 142174 142253 . + 0 ID=cds-NP_009398.1;Parent=rna-NM_001178150.1;Dbxref=SGD:S000000003,GeneID:851260,Genbank:NP_009398.1;Name=NP_009398.1;Note=Translation elongation factor 1 beta%3B stimulates nucleotide exchange to regenerate EF-1 alpha-GTP for the next elongation cycle%3B part of the EF-1 complex%2C which facilitates binding of aminoacyl-tRNA to the ribosomal A site%3B human homolog EEF1B2 can complement yeast efb1 mutants;experiment=EXISTENCE:direct assay:GO:0005085 guanyl-nucleotide exchange factor activity [PMID:17925388],EXISTENCE:direct assay:GO:0032232 negative regulation of actin filament bundle assembly [PMID:19095653],EXISTENCE:genetic interaction:GO:0006449 regulation of translational termination [PMID:19545407],EXISTENCE:mutant phenotype:GO:0005853 eukaryotic translation elongation factor 1 complex [PMID:8420802],EXISTENCE:mutant phenotype:GO:0006414 translational elongation [PMID:10409717],EXISTENCE:mutant phenotype:GO:1990145 maintenance of translational fidelity [PMID:10409717];gbkey=CDS;gene=EFB1;locus_tag=YAL003W;product=translation elongation factor 1 subunit beta;protein_id=NP_009398.1
Chr01 RefSeq CDS 142620 143160 . + 1 ID=cds-NP_009398.1;Parent=rna-NM_001178150.1;Dbxref=SGD:S000000003,GeneID:851260,Genbank:NP_009398.1;Name=NP_009398.1;Note=Translation elongation factor 1 beta%3B stimulates nucleotide exchange to regenerate EF-1 alpha-GTP for the next elongation cycle%3B part of the EF-1 complex%2C which facilitates binding of aminoacyl-tRNA to the ribosomal A site%3B human homolog EEF1B2 can complement yeast efb1 mutants;experiment=EXISTENCE:direct assay:GO:0005085 guanyl-nucleotide exchange factor activity [PMID:17925388],EXISTENCE:direct assay:GO:0032232 negative regulation of actin filament bundle assembly [PMID:19095653],EXISTENCE:genetic interaction:GO:0006449 regulation of translational termination [PMID:19545407],EXISTENCE:mutant phenotype:GO:0005853 eukaryotic translation elongation factor 1 complex [PMID:8420802],EXISTENCE:mutant phenotype:GO:0006414 translational elongation [PMID:10409717],EXISTENCE:mutant phenotype:GO:1990145 maintenance of translational fidelity [PMID:10409717];gbkey=CDS;gene=EFB1;locus_tag=YAL003W;product=translation elongation factor 1 subunit beta;protein_id=NP_009398.1
Chr01 RefSeq gene 142367 142468 . + . ID=gene-YNCA0003W;Dbxref=GeneID:9164867;Name=SNR18;gbkey=Gene;gene=SNR18;gene_biotype=snoRNA;locus_tag=YNCA0003W
Chr01 RefSeq snoRNA 142367 142468 . + . ID=rna-NR_132150.1;Parent=gene-YNCA0003W;Dbxref=SGD:S000007500,GeneID:9164867,Genbank:NR_132150.1;Name=NR_132150.1;Note=C/D box small nucleolar RNA (snoRNA)%3B commonly referred to as U18%3B guides 2'-O-methylation of large subunit (LSU) rRNA at positions A649 and C650;experiment=EXISTENCE:curator inference:GO:0005730 nucleolus [PMID:8674114],EXISTENCE:direct assay:GO:0031428 box C/D RNP complex [PMID:10094313],EXISTENCE:physical interaction:GO:0031428 box C/D RNP complex [PMID:10733567];gbkey=ncRNA;gene=SNR18;locus_tag=YNCA0003W;orig_transcript_id=gnl|WGS:|mrna.YNCA0003W-RA;product=SNR18;transcript_id=NR_132150.1
Chr01 RefSeq exon 142367 142468 . + . ID=exon-NR_132150.1-1;Parent=rna-NR_132150.1;Dbxref=SGD:S000007500,GeneID:9164867,Genbank:NR_132150.1;Note=C/D box small nucleolar RNA (snoRNA)%3B commonly referred to as U18%3B guides 2'-O-methylation of large subunit (LSU) rRNA at positions A649 and C650;experiment=EXISTENCE:curator inference:GO:0005730 nucleolus [PMID:8674114],EXISTENCE:direct assay:GO:0031428 box C/D RNP complex [PMID:10094313],EXISTENCE:physical interaction:GO:0031428 box C/D RNP complex [PMID:10733567];gbkey=ncRNA;gene=SNR18;locus_tag=YNCA0003W;orig_transcript_id=gnl|WGS:|mrna.YNCA0003W-RA;product=SNR18;transcript_id=NR_132150.1
Chr01 RefSeq gene 143707 147531 . + . ID=gene-YAL002W;Dbxref=GeneID:851261;Name=VPS8;end_range=147531,.;gbkey=Gene;gene=VPS8;gene_biotype=protein_coding;gene_synonym=FUN15,VPL8,VPT8;locus_tag=YAL002W;partial=true;start_range=.,143707
Chr01 RefSeq mRNA 143707 147531 . + . ID=rna-NM_001178149.1;Parent=gene-YAL002W;Dbxref=GeneID:851261,Genbank:NM_001178149.1;Name=NM_001178149.1;end_range=147531,.;gbkey=mRNA;gene=VPS8;locus_tag=YAL002W;partial=true;product=CORVET complex membrane-binding subunit VPS8;start_range=.,143707;transcript_id=NM_001178149.1
Chr01 RefSeq exon 143707 147531 . + . ID=exon-NM_001178149.1-1;Parent=rna-NM_001178149.1;Dbxref=GeneID:851261,Genbank:NM_001178149.1;end_range=147531,.;gbkey=mRNA;gene=VPS8;locus_tag=YAL002W;partial=true;product=CORVET complex membrane-binding subunit VPS8;start_range=.,143707;transcript_id=NM_001178149.1
Chr01 RefSeq CDS 143707 147531 . + 0 ID=cds-NP_009399.2;Parent=rna-NM_001178149.1;Dbxref=SGD:S000000002,GeneID:851261,Genbank:NP_009399.2;Name=NP_009399.2;Note=Membrane-binding component of the CORVET complex%3B involved in endosomal vesicle tethering and fusion in the endosome to vacuole protein targeting pathway%3B interacts with Vps21p%3B contains RING finger motif;experiment=EXISTENCE:direct assay:GO:0005770 late endosome [PMID:19828734],EXISTENCE:direct assay:GO:0016020 membrane [PMID:8969229],EXISTENCE:direct assay:GO:0033263 CORVET complex [PMID:17488625],EXISTENCE:direct assay:GO:0051020 GTPase binding [PMID:19828734],EXISTENCE:mutant phenotype:GO:0006623 protein targeting to vacuole [PMID:20173035],EXISTENCE:mutant phenotype:GO:0032511 late endosome to vacuole transport via multivesicular body sorting pathway [PMID:19828734],EXISTENCE:mutant phenotype:GO:0043495 protein-membrane adaptor activity [PMID:19828734],EXISTENCE:physical interaction:GO:0051020 GTPase binding [PMID:19828734];gbkey=CDS;gene=VPS8;locus_tag=YAL002W;product=CORVET complex membrane-binding subunit VPS8;protein_id=NP_009399.2
Chr01 RefSeq origin_of_replication 147398 147717 . + . ID=id-Chr01:147398..147717;Dbxref=SGD:S000121255;Note=ARS108%3B Autonomously Replicating Sequence;gbkey=rep_origin
Chr01 RefSeq gene 147594 151166 . - . ID=gene-YAL001C;Dbxref=GeneID:851262;Name=TFC3;end_range=151166,.;gbkey=Gene;gene=TFC3;gene_biotype=protein_coding;gene_synonym=FUN24,TSV115;locus_tag=YAL001C;partial=true;start_range=.,147594
Chr01 RefSeq mRNA 147594 151166 . - . ID=rna-NM_001178148.1;Parent=gene-YAL001C;Dbxref=GeneID:851262,Genbank:NM_001178148.1;Name=NM_001178148.1;end_range=151166,.;gbkey=mRNA;gene=TFC3;locus_tag=YAL001C;partial=true;product=transcription factor TFIIIC subunit TFC3;start_range=.,147594;transcript_id=NM_001178148.1
Chr01 RefSeq exon 151097 151166 . - . ID=exon-NM_001178148.1-1;Parent=rna-NM_001178148.1;Dbxref=GeneID:851262,Genbank:NM_001178148.1;end_range=151166,.;gbkey=mRNA;gene=TFC3;locus_tag=YAL001C;partial=true;product=transcription factor TFIIIC subunit TFC3;transcript_id=NM_001178148.1
Chr01 RefSeq exon 147594 151006 . - . ID=exon-NM_001178148.1-2;Parent=rna-NM_001178148.1;Dbxref=GeneID:851262,Genbank:NM_001178148.1;gbkey=mRNA;gene=TFC3;locus_tag=YAL001C;partial=true;product=transcription factor TFIIIC subunit TFC3;start_range=.,147594;transcript_id=NM_001178148.1
Chr01 RefSeq CDS 151097 151166 . - 0 ID=cds-NP_009400.1;Parent=rna-NM_001178148.1;Dbxref=SGD:S000000001,GeneID:851262,Genbank:NP_009400.1;Name=NP_009400.1;Note=Subunit of RNA polymerase III transcription initiation factor complex%3B part of TauB domain of TFIIIC that binds DNA at BoxB promoter sites of tRNA and similar genes%3B cooperates with Tfc6p in DNA binding%3B largest of six subunits of RNA polymerase III transcription initiation factor complex (TFIIIC)%3B colocalizes with condensin at pol III genes and several ETC ('extra TFIIIC)' sites%3B may have a role in recruiting or stabilizing Scc2/4 and condensin on chromosomes;experiment=EXISTENCE:direct assay:GO:0000127 transcription factor TFIIIC complex [PMID:1279682|PMID:1474578|PMID:2002052|PMID:2180956],EXISTENCE:direct assay:GO:0001002 RNA polymerase III type 1 promoter sequence-specific DNA binding [PMID:2404611|PMID:2649882],EXISTENCE:direct assay:GO:0001003 RNA polymerase III type 2 promoter sequence-specific DNA binding [PMID:2404611],EXISTENCE:direct assay:GO:0005739 mitochondrion [PMID:14576278|PMID:16823961],EXISTENCE:direct assay:GO:0006383 transcription by RNA polymerase III [PMID:2183033|PMID:3633923|PMID:8464480],EXISTENCE:direct assay:GO:0008301 DNA binding%2C bending [PMID:2002052],EXISTENCE:direct assay:GO:0042791 5S class rRNA transcription by RNA polymerase III [PMID:2183033],EXISTENCE:mutant phenotype:GO:0042791 5S class rRNA transcription by RNA polymerase III [PMID:8083243],EXISTENCE:mutant phenotype:GO:0071168 protein localization to chromatin [PMID:18708580];gbkey=CDS;gene=TFC3;locus_tag=YAL001C;product=transcription factor TFIIIC subunit TFC3;protein_id=NP_009400.1
Chr01 RefSeq CDS 147594 151006 . - 2 ID=cds-NP_009400.1;Parent=rna-NM_001178148.1;Dbxref=SGD:S000000001,GeneID:851262,Genbank:NP_009400.1;Name=NP_009400.1;Note=Subunit of RNA polymerase III transcription initiation factor complex%3B part of TauB domain of TFIIIC that binds DNA at BoxB promoter sites of tRNA and similar genes%3B cooperates with Tfc6p in DNA binding%3B largest of six subunits of RNA polymerase III transcription initiation factor complex (TFIIIC)%3B colocalizes with condensin at pol III genes and several ETC ('extra TFIIIC)' sites%3B may have a role in recruiting or stabilizing Scc2/4 and condensin on chromosomes;experiment=EXISTENCE:direct assay:GO:0000127 transcription factor TFIIIC complex [PMID:1279682|PMID:1474578|PMID:2002052|PMID:2180956],EXISTENCE:direct assay:GO:0001002 RNA polymerase III type 1 promoter sequence-specific DNA binding [PMID:2404611|PMID:2649882],EXISTENCE:direct assay:GO:0001003 RNA polymerase III type 2 promoter sequence-specific DNA binding [PMID:2404611],EXISTENCE:direct assay:GO:0005739 mitochondrion [PMID:14576278|PMID:16823961],EXISTENCE:direct assay:GO:0006383 transcription by RNA polymerase III [PMID:2183033|PMID:3633923|PMID:8464480],EXISTENCE:direct assay:GO:0008301 DNA binding%2C bending [PMID:2002052],EXISTENCE:direct assay:GO:0042791 5S class rRNA transcription by RNA polymerase III [PMID:2183033],EXISTENCE:mutant phenotype:GO:0042791 5S class rRNA transcription by RNA polymerase III [PMID:8083243],EXISTENCE:mutant phenotype:GO:0071168 protein localization to chromatin [PMID:18708580];gbkey=CDS;gene=TFC3;locus_tag=YAL001C;product=transcription factor TFIIIC subunit TFC3;protein_id=NP_009400.1
Chr01 RefSeq centromere 151465 151582 . + . ID=id-Chr01:151465..151582;Dbxref=SGD:S000006463;Note=CEN1%3B Chromosome I centromere;gbkey=centromere
Chr01 RefSeq centromere 151465 151474 . + . ID=id-Chr01:151465..151474;Note=CEN1_CDEI of CEN1;gbkey=centromere
Chr01 RefSeq centromere 151475 151557 . + . ID=id-Chr01:151475..151557;Note=CEN1_CDEII of CEN1;gbkey=centromere
Chr01 RefSeq centromere 151558 151582 . + . ID=id-Chr01:151558..151582;Note=CEN1_CDEIII of CEN1;gbkey=centromere
Chr01 RefSeq gene 152257 153876 . + . ID=gene-YAR002W;Dbxref=GeneID:851263;Name=NUP60;end_range=153876,.;gbkey=Gene;gene=NUP60;gene_biotype=protein_coding;locus_tag=YAR002W;partial=true;start_range=.,152257
Chr01 RefSeq mRNA 152257 153876 . + . ID=rna-NM_001178209.1;Parent=gene-YAR002W;Dbxref=GeneID:851263,Genbank:NM_001178209.1;Name=NM_001178209.1;end_range=153876,.;gbkey=mRNA;gene=NUP60;locus_tag=YAR002W;partial=true;product=FG-nucleoporin NUP60;start_range=.,152257;transcript_id=NM_001178209.1
Chr01 RefSeq exon 152257 153876 . + . ID=exon-NM_001178209.1-1;Parent=rna-NM_001178209.1;Dbxref=GeneID:851263,Genbank:NM_001178209.1;end_range=153876,.;gbkey=mRNA;gene=NUP60;locus_tag=YAR002W;partial=true;product=FG-nucleoporin NUP60;start_range=.,152257;transcript_id=NM_001178209.1
Chr01 RefSeq CDS 152257 153876 . + 0 ID=cds-NP_009401.1;Parent=rna-NM_001178209.1;Dbxref=SGD:S000000063,GeneID:851263,Genbank:NP_009401.1;Name=NP_009401.1;Note=FG-nucleoporin component of central core of the nuclear pore complex%3B contributes directly to nucleocytoplasmic transport and maintenance of the nuclear pore complex (NPC) permeability barrier and is involved in gene tethering at the nuclear periphery%3B relocalizes to the cytosol in response to hypoxia%3B both NUP1 and NUP60 are homologous to human NUP153;experiment=EXISTENCE:direct assay:GO:0005543 phospholipid binding [PMID:17897934],EXISTENCE:direct assay:GO:0005634 nucleus [PMID:22932476],EXISTENCE:direct assay:GO:0005643 nuclear pore [PMID:10684247],EXISTENCE:direct assay:GO:0005829 cytosol [PMID:22932476],EXISTENCE:direct assay:GO:0044613 nuclear pore central transport channel [PMID:18046406],EXISTENCE:direct assay:GO:0044615 nuclear pore nuclear basket [PMID:10684247],EXISTENCE:genetic interaction:GO:0006607 NLS-bearing protein import into nucleus [PMID:15039779],EXISTENCE:genetic interaction:GO:0017056 structural constituent of nuclear pore [PMID:11387327],EXISTENCE:genetic interaction:GO:0060188 regulation of protein desumoylation [PMID:17403926],EXISTENCE:mutant phenotype:GO:0000972 transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery [PMID:20098417|PMID:20932479|PMID:21036941],EXISTENCE:mutant phenotype:GO:0000973 posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery [PMID:20932479],EXISTENCE:mutant phenotype:GO:0006302 double-strand break repair [PMID:17538013],EXISTENCE:mutant phenotype:GO:0006607 NLS-bearing protein import into nucleus [PMID:11535617],EXISTENCE:mutant phenotype:GO:0006611 protein export from nucleus [PMID:11535617],EXISTENCE:mutant phenotype:GO:0006913 nucleocytoplasmic transport [PMID:11535617],EXISTENCE:mutant phenotype:GO:0008298 intracellular mRNA localization [PMID:21036941],EXISTENCE:mutant phenotype:GO:0016973 poly(A)+ mRNA export from nucleus [PMID:12411502|PMID:21036941],EXISTENCE:mutant phenotype:GO:0017056 structural constituent of nuclear pore [PMID:17418788],EXISTENCE:mutant phenotype:GO:0030466 silent mating-type cassette heterochromatin assembly [PMID:21818277],EXISTENCE:mutant phenotype:GO:0031990 mRNA export from nucleus in response to heat stress [PMID:18258809],EXISTENCE:mutant phenotype:GO:0034398 telomere tethering at nuclear periphery [PMID:11862215|PMID:21818277],EXISTENCE:mutant phenotype:GO:0051276 chromosome organization [PMID:21818277],EXISTENCE:physical interaction:GO:0017056 structural constituent of nuclear pore [PMID:17418788];gbkey=CDS;gene=NUP60;locus_tag=YAR002W;product=FG-nucleoporin NUP60;protein_id=NP_009401.1
Chr01 RefSeq gene 154065 154724 . - . ID=gene-YAR002C-A;Dbxref=GeneID:851264;Name=ERP1;end_range=154724,.;gbkey=Gene;gene=ERP1;gene_biotype=protein_coding;locus_tag=YAR002C-A;partial=true;start_range=.,154065
Chr01 RefSeq mRNA 154065 154724 . - . ID=rna-NM_001180033.1;Parent=gene-YAR002C-A;Dbxref=GeneID:851264,Genbank:NM_001180033.1;Name=NM_001180033.1;end_range=154724,.;gbkey=mRNA;gene=ERP1;locus_tag=YAR002C-A;partial=true;product=Erp1p;start_range=.,154065;transcript_id=NM_001180033.1
Chr01 RefSeq exon 154065 154724 . - . ID=exon-NM_001180033.1-1;Parent=rna-NM_001180033.1;Dbxref=GeneID:851264,Genbank:NM_001180033.1;end_range=154724,.;gbkey=mRNA;gene=ERP1;locus_tag=YAR002C-A;partial=true;product=Erp1p;start_range=.,154065;transcript_id=NM_001180033.1
Chr01 RefSeq CDS 154065 154724 . - 0 ID=cds-NP_009402.1;Parent=rna-NM_001180033.1;Dbxref=SGD:S000002129,GeneID:851264,Genbank:NP_009402.1;Name=NP_009402.1;Note=Member of the p24 family involved in ER to Golgi transport%3B role in misfolded protein quality control%3B forms heterotrimeric complex with Erp2p%2C Emp24p%2C and Erv25p%3B localized to COPII-coated vesicles%3B ERP1 has a paralog%2C ERP6%2C that arose from the whole genome duplication;experiment=EXISTENCE:direct assay:GO:0005739 mitochondrion [PMID:14576278|PMID:16823961],EXISTENCE:direct assay:GO:0030134 COPII-coated ER to Golgi transport vesicle [PMID:11157978],EXISTENCE:mutant phenotype:GO:0006621 protein retention in ER lumen [PMID:10359606],EXISTENCE:mutant phenotype:GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport [PMID:10359606],EXISTENCE:physical interaction:GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport [PMID:11157978];gbkey=CDS;gene=ERP1;locus_tag=YAR002C-A;product=Erp1p;protein_id=NP_009402.1
Chr01 RefSeq gene 155005 156285 . + . ID=gene-YAR003W;Dbxref=GeneID:851265;Name=SWD1;end_range=156285,.;gbkey=Gene;gene=SWD1;gene_biotype=protein_coding;gene_synonym=CPS50,FUN16,SAF49;locus_tag=YAR003W;partial=true;start_range=.,155005
Chr01 RefSeq mRNA 155005 156285 . + . ID=rna-NM_001178210.1;Parent=gene-YAR003W;Dbxref=GeneID:851265,Genbank:NM_001178210.1;Name=NM_001178210.1;end_range=156285,.;gbkey=mRNA;gene=SWD1;locus_tag=YAR003W;partial=true;product=COMPASS subunit protein SWD1;start_range=.,155005;transcript_id=NM_001178210.1
Chr01 RefSeq exon 155005 156285 . + . ID=exon-NM_001178210.1-1;Parent=rna-NM_001178210.1;Dbxref=GeneID:851265,Genbank:NM_001178210.1;end_range=156285,.;gbkey=mRNA;gene=SWD1;locus_tag=YAR003W;partial=true;product=COMPASS subunit protein SWD1;start_range=.,155005;transcript_id=NM_001178210.1
Chr01 RefSeq CDS 155005 156285 . + 0 ID=cds-NP_009403.1;Parent=rna-NM_001178210.1;Dbxref=SGD:S000000064,GeneID:851265,Genbank:NP_009403.1;Name=NP_009403.1;Note=Subunit of the COMPASS (Set1C) complex%3B COMPASS methylates histone H3 on lysine 4 and is required in transcriptional silencing near telomeres%3B WD40 beta propeller superfamily member with similarity to mammalian Rbbp7;experiment=EXISTENCE:direct assay:GO:0042800 histone methyltransferase activity (H3-K4 specific) [PMID:11742990|PMID:11805083],EXISTENCE:direct assay:GO:0051568 histone H3-K4 methylation [PMID:11742990|PMID:11752412|PMID:11805083],EXISTENCE:mutant phenotype:GO:0000723 telomere maintenance [PMID:11742990],EXISTENCE:mutant phenotype:GO:0006348 chromatin silencing at telomere [PMID:11687631|PMID:11752412|PMID:11805083],EXISTENCE:mutant phenotype:GO:0006355 regulation of transcription%2C DNA-templated [PMID:11687631],EXISTENCE:mutant phenotype:GO:0042800 histone methyltransferase activity (H3-K4 specific) [PMID:11752412|PMID:11805083],EXISTENCE:mutant phenotype:GO:0051568 histone H3-K4 methylation [PMID:11752412|PMID:11805083],EXISTENCE:physical interaction:GO:0048188 Set1C/COMPASS complex [PMID:11687631|PMID:11742990|PMID:11752412];gbkey=CDS;gene=SWD1;locus_tag=YAR003W;product=COMPASS subunit protein SWD1;protein_id=NP_009403.1
Chr01 RefSeq gene 156754 158619 . - . ID=gene-YAR007C;Dbxref=GeneID:851266;Name=RFA1;end_range=158619,.;gbkey=Gene;gene=RFA1;gene_biotype=protein_coding;gene_synonym=BUF2,FUN3,RPA1,RPA70;locus_tag=YAR007C;partial=true;start_range=.,156754
Chr01 RefSeq mRNA 156754 158619 . - . ID=rna-NM_001178211.1;Parent=gene-YAR007C;Dbxref=GeneID:851266,Genbank:NM_001178211.1;Name=NM_001178211.1;end_range=158619,.;gbkey=mRNA;gene=RFA1;locus_tag=YAR007C;partial=true;product=replication factor A subunit protein RFA1;start_range=.,156754;transcript_id=NM_001178211.1
Chr01 RefSeq exon 156754 158619 . - . ID=exon-NM_001178211.1-1;Parent=rna-NM_001178211.1;Dbxref=GeneID:851266,Genbank:NM_001178211.1;end_range=158619,.;gbkey=mRNA;gene=RFA1;locus_tag=YAR007C;partial=true;product=replication factor A subunit protein RFA1;start_range=.,156754;transcript_id=NM_001178211.1
Chr01 RefSeq CDS 156754 158619 . - 0 ID=cds-NP_009404.1;Parent=rna-NM_001178211.1;Dbxref=SGD:S000000065,GeneID:851266,Genbank:NP_009404.1;Name=NP_009404.1;Note=Subunit of heterotrimeric Replication Protein A (RPA)%3B RPA is a highly conserved single-stranded DNA binding protein involved in DNA replication%2C repair%2C and recombination%3B RPA protects against inappropriate telomere recombination%2C and upon telomere uncapping%2C prevents cell proliferation by a checkpoint-independent pathway%3B role in DNA catenation/decatenation pathway of chromosome disentangling%3B relocalizes to the cytosol in response to hypoxia;experiment=EXISTENCE:direct assay:GO:0000794 condensed nuclear chromosome [PMID:9679065],EXISTENCE:direct assay:GO:0003690 double-stranded DNA binding [PMID:7761422],EXISTENCE:direct assay:GO:0003697 single-stranded DNA binding [PMID:8804316],EXISTENCE:direct assay:GO:0003729 mRNA binding [PMID:23222640],EXISTENCE:direct assay:GO:0005634 nucleus [PMID:22932476],EXISTENCE:direct assay:GO:0005662 DNA replication factor A complex [PMID:2554144],EXISTENCE:direct assay:GO:0005737 cytoplasm [PMID:15282802],EXISTENCE:direct assay:GO:0005829 cytosol [PMID:22932476],EXISTENCE:direct assay:GO:0006265 DNA topological change [PMID:22885009],EXISTENCE:direct assay:GO:0006268 DNA unwinding involved in DNA replication [PMID:2554144],EXISTENCE:direct assay:GO:0006289 nucleotide-excision repair [PMID:8910442],EXISTENCE:direct assay:GO:0030491 heteroduplex formation [PMID:12226081],EXISTENCE:direct assay:GO:0043565 sequence-specific DNA binding [PMID:7761422],EXISTENCE:genetic interaction:GO:0000722 telomere maintenance via recombination [PMID:17202155],EXISTENCE:genetic interaction:GO:0000724 double-strand break repair via homologous recombination [PMID:9679065],EXISTENCE:mutant phenotype:GO:0000781 chromosome%2C telomeric region [PMID:14702040],EXISTENCE:mutant phenotype:GO:0006260 DNA replication [PMID:7969128],EXISTENCE:mutant phenotype:GO:0006281 DNA repair [PMID:7969128],EXISTENCE:mutant phenotype:GO:0006312 mitotic recombination [PMID:7969128],EXISTENCE:mutant phenotype:GO:0007131 reciprocal meiotic recombination [PMID:12072452],EXISTENCE:mutant phenotype:GO:0010833 telomere maintenance via telomere lengthening [PMID:22354040],EXISTENCE:mutant phenotype:GO:0016567 protein ubiquitination [PMID:18342608],EXISTENCE:physical interaction:GO:0007004 telomere maintenance via telomerase [PMID:2554144],EXISTENCE:physical interaction:GO:0016567 protein ubiquitination [PMID:18342608],EXISTENCE:physical interaction:GO:0045184 establishment of protein localization [PMID:2554144];gbkey=CDS;gene=RFA1;locus_tag=YAR007C;product=replication factor A subunit protein RFA1;protein_id=NP_009404.1
Chr01 RefSeq gene 158966 159793 . + . ID=gene-YAR008W;Dbxref=GeneID:851267;Name=SEN34;end_range=159793,.;gbkey=Gene;gene=SEN34;gene_biotype=protein_coding;gene_synonym=FUN4;locus_tag=YAR008W;partial=true;start_range=.,158966
Chr01 RefSeq mRNA 158966 159793 . + . ID=rna-NM_001178212.1;Parent=gene-YAR008W;Dbxref=GeneID:851267,Genbank:NM_001178212.1;Name=NM_001178212.1;end_range=159793,.;gbkey=mRNA;gene=SEN34;locus_tag=YAR008W;partial=true;product=tRNA splicing endonuclease subunit SEN34;start_range=.,158966;transcript_id=NM_001178212.1
Chr01 RefSeq exon 158966 159793 . + . ID=exon-NM_001178212.1-1;Parent=rna-NM_001178212.1;Dbxref=GeneID:851267,Genbank:NM_001178212.1;end_range=159793,.;gbkey=mRNA;gene=SEN34;locus_tag=YAR008W;partial=true;product=tRNA splicing endonuclease subunit SEN34;start_range=.,158966;transcript_id=NM_001178212.1
Chr01 RefSeq CDS 158966 159793 . + 0 ID=cds-NP_009405.1;Parent=rna-NM_001178212.1;Dbxref=SGD:S000000066,GeneID:851267,Genbank:NP_009405.1;Name=NP_009405.1;Note=Subunit of the tRNA splicing endonuclease%3B tRNA splicing endonuclease (Sen complex) is composed of Sen2p%2C Sen15p%2C Sen34p%2C and Sen54p%3B Sen complex also cleaves the CBP1 mRNA at the mitochondrial surface%3B Sen34p contains the active site for tRNA 3' splice site cleavage and has similarity to Sen2p and to Archaeal tRNA splicing endonuclease;experiment=EXISTENCE:direct assay:GO:0000213 tRNA-intron endonuclease activity [PMID:9200603],EXISTENCE:direct assay:GO:0000214 tRNA-intron endonuclease complex [PMID:9200603],EXISTENCE:direct assay:GO:0000379 tRNA-type intron splice site recognition and cleavage [PMID:9200603],EXISTENCE:direct assay:GO:0005739 mitochondrion [PMID:16823961],EXISTENCE:direct assay:GO:0005741 mitochondrial outer membrane [PMID:16407407],EXISTENCE:mutant phenotype:GO:0000213 tRNA-intron endonuclease activity [PMID:9200603],EXISTENCE:mutant phenotype:GO:0000379 tRNA-type intron splice site recognition and cleavage [PMID:9200603];gbkey=CDS;gene=SEN34;locus_tag=YAR008W;product=tRNA splicing endonuclease subunit SEN34;protein_id=NP_009405.1
Chr01 RefSeq origin_of_replication 159907 160127 . + . ID=id-Chr01:159907..160127;Dbxref=SGD:S000077372;Note=ARS101%3B ARS containing multiple redundant ORC binding sites%3B ORC is the acronym for origin recognition complex;gbkey=rep_origin
Chr01 RefSeq long_terminal_repeat 160105 160237 . - . ID=id-Chr01:160105..160237;Dbxref=SGD:S000006788;Note=Ty1 LTR;gbkey=repeat_region;rpt_type=long_terminal_repeat
Chr01 RefSeq mobile_genetic_element 160238 166162 . - . ID=id-Chr01:160238..166162;Dbxref=SGD:S000006792;Note=YARCTy1-1%3B Ty1 element%2C LTR retrotransposon of the Copia (Pseudoviridae) group%3B contains genes TYA Gag and TYB Pol%2C encoding proteins involved in structure and function of virus-like particles%2C flanked by two direct repeats%3B mutated in S288C;gbkey=mobile_element;mobile_element_type=retrotransposon:YARCTy1-1
Chr01 RefSeq long_terminal_repeat 160238 160574 . - . ID=id-Chr01:160238..160574;Dbxref=SGD:S000006789;Note=Ty1 LTR;gbkey=repeat_region;rpt_type=long_terminal_repeat
Chr01 RefSeq gene 160597 164187 . - . ID=gene-YAR009C;Dbxref=GeneID:851268;Name=YAR009C;end_range=164187,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YAR009C;partial=true;start_range=.,160597
Chr01 RefSeq mRNA 160597 164187 . - . ID=rna-NM_001178213.1;Parent=gene-YAR009C;Dbxref=GeneID:851268,Genbank:NM_001178213.1;Name=NM_001178213.1;end_range=164187,.;gbkey=mRNA;locus_tag=YAR009C;partial=true;product=truncated gag-pol fusion protein;start_range=.,160597;transcript_id=NM_001178213.1
Chr01 RefSeq exon 160597 164187 . - . ID=exon-NM_001178213.1-1;Parent=rna-NM_001178213.1;Dbxref=GeneID:851268,Genbank:NM_001178213.1;end_range=164187,.;gbkey=mRNA;locus_tag=YAR009C;partial=true;product=truncated gag-pol fusion protein;start_range=.,160597;transcript_id=NM_001178213.1
Chr01 RefSeq CDS 160597 164187 . - 0 ID=cds-NP_009406.1;Parent=rna-NM_001178213.1;Dbxref=SGD:S000000067,GeneID:851268,Genbank:NP_009406.1;Name=NP_009406.1;Note=Retrotransposon TYA Gag and TYB Pol genes%3B Gag processing produces capsid proteins%2C Pol is cleaved to produce protease%2C reverse transcriptase and integrase activities%3B in YARCTy1-1 TYB is mutant and probably non-functional%3B protein product forms cytoplasmic foci upon DNA replication stress;experiment=EXISTENCE:direct assay:GO:0005634 nucleus [PMID:9448009],EXISTENCE:direct assay:GO:0005737 cytoplasm [PMID:22842922];gbkey=CDS;locus_tag=YAR009C;product=truncated gag-pol fusion protein;protein_id=NP_009406.1
Chr01 RefSeq gene 164544 165866 . - . ID=gene-YAR010C;Dbxref=GeneID:851269;Name=YAR010C;end_range=165866,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YAR010C;partial=true;start_range=.,164544
Chr01 RefSeq mRNA 164544 165866 . - . ID=rna-NM_001178214.1;Parent=gene-YAR010C;Dbxref=GeneID:851269,Genbank:NM_001178214.1;Name=NM_001178214.1;end_range=165866,.;gbkey=mRNA;locus_tag=YAR010C;partial=true;product=gag protein;start_range=.,164544;transcript_id=NM_001178214.1
Chr01 RefSeq exon 164544 165866 . - . ID=exon-NM_001178214.1-1;Parent=rna-NM_001178214.1;Dbxref=GeneID:851269,Genbank:NM_001178214.1;end_range=165866,.;gbkey=mRNA;locus_tag=YAR010C;partial=true;product=gag protein;start_range=.,164544;transcript_id=NM_001178214.1
Chr01 RefSeq CDS 164544 165866 . - 0 ID=cds-NP_009407.1;Parent=rna-NM_001178214.1;Dbxref=SGD:S000000068,GeneID:851269,Genbank:NP_009407.1;Name=NP_009407.1;Note=Retrotransposon TYA Gag gene co-transcribed with TYB Pol%3B Gag processing produces capsid proteins%3B in YARCTy1-1 TYB is mutant and probably non-functional;gbkey=CDS;locus_tag=YAR010C;product=gag protein;protein_id=NP_009407.1
Chr01 RefSeq long_terminal_repeat 165826 166162 . - . ID=id-Chr01:165826..166162;Dbxref=SGD:S000006790;Note=Ty1 LTR;gbkey=repeat_region;rpt_type=long_terminal_repeat
Chr01 RefSeq gene 166267 166339 . + . ID=gene-YNCA0004W;Dbxref=GeneID:851270;Name=TGA1;gbkey=Gene;gene=TGA1;gene_biotype=tRNA;locus_tag=YNCA0004W
Chr01 RefSeq tRNA 166267 166339 . + . ID=rna-YNCA0004W;Parent=gene-YNCA0004W;Dbxref=SGD:S000006521,GeneID:851270;Note=Alanine tRNA (tRNA-Ala)%2C predicted by tRNAscan-SE analysis%3B one of 5 nuclear tRNA genes containing the tDNA-anticodon TGC (mature tRNA may be UGC or may contain modified bases)%2C decodes GCA and probably GCG codons into alanine%2C one of 16 nuclear tRNAs for alanine;experiment=EXISTENCE:curator inference:GO:0005829 cytosol [PMID:9023104],EXISTENCE:curator inference:GO:0006414 translational elongation [PMID:9023104];gbkey=tRNA;gene=TGA1;locus_tag=YNCA0004W;product=tRNA-Ala
Chr01 RefSeq exon 166267 166339 . + . ID=exon-YNCA0004W-1;Parent=rna-YNCA0004W;Dbxref=SGD:S000006521,GeneID:851270;Note=Alanine tRNA (tRNA-Ala)%2C predicted by tRNAscan-SE analysis%3B one of 5 nuclear tRNA genes containing the tDNA-anticodon TGC (mature tRNA may be UGC or may contain modified bases)%2C decodes GCA and probably GCG codons into alanine%2C one of 16 nuclear tRNAs for alanine;experiment=EXISTENCE:curator inference:GO:0005829 cytosol [PMID:9023104],EXISTENCE:curator inference:GO:0006414 translational elongation [PMID:9023104];gbkey=tRNA;gene=TGA1;locus_tag=YNCA0004W;product=tRNA-Ala
Chr01 RefSeq gene 166742 168871 . - . ID=gene-YAR014C;Dbxref=GeneID:851271;Name=BUD14;end_range=168871,.;gbkey=Gene;gene=BUD14;gene_biotype=protein_coding;locus_tag=YAR014C;partial=true;start_range=.,166742
Chr01 RefSeq mRNA 166742 168871 . - . ID=rna-NM_001178215.2;Parent=gene-YAR014C;Dbxref=GeneID:851271,Genbank:NM_001178215.2;Name=NM_001178215.2;end_range=168871,.;gbkey=mRNA;gene=BUD14;locus_tag=YAR014C;partial=true;product=protein phosphatase regulator BUD14;start_range=.,166742;transcript_id=NM_001178215.2
Chr01 RefSeq exon 166742 168871 . - . ID=exon-NM_001178215.2-1;Parent=rna-NM_001178215.2;Dbxref=GeneID:851271,Genbank:NM_001178215.2;end_range=168871,.;gbkey=mRNA;gene=BUD14;locus_tag=YAR014C;partial=true;product=protein phosphatase regulator BUD14;start_range=.,166742;transcript_id=NM_001178215.2
Chr01 RefSeq CDS 166742 168871 . - 0 ID=cds-NP_009408.3;Parent=rna-NM_001178215.2;Dbxref=SGD:S000000069,GeneID:851271,Genbank:NP_009408.3;Name=NP_009408.3;Note=Protein involved in bud-site selection%3B Bud14p-Glc7p complex is a cortical regulator of dynein%3B forms a complex with Kel1p and Kel2p that regulates Bnr1p (formin) to affect actin cable assembly%2C cytokinesis%2C and polarized growth%3B diploid mutants display a random budding pattern instead of the wild-type bipolar pattern%3B relative distribution to the nucleus increases upon DNA replication stress;experiment=EXISTENCE:direct assay:GO:0000131 incipient cellular bud site [PMID:11452010],EXISTENCE:direct assay:GO:0005634 nucleus [PMID:22842922],EXISTENCE:direct assay:GO:0005737 cytoplasm [PMID:22842922],EXISTENCE:direct assay:GO:0005934 cellular bud tip [PMID:11452010],EXISTENCE:direct assay:GO:0005935 cellular bud neck [PMID:11452010],EXISTENCE:direct assay:GO:0006355 regulation of transcription%2C DNA-templated [PMID:15601868],EXISTENCE:direct assay:GO:0019888 protein phosphatase regulator activity [PMID:16107882],EXISTENCE:direct assay:GO:0030837 negative regulation of actin filament polymerization [PMID:19217430],EXISTENCE:direct assay:GO:0032880 regulation of protein localization [PMID:19217430],EXISTENCE:direct assay:GO:1990615 Kelch-containing formin regulatory complex [PMID:24828508],EXISTENCE:genetic interaction:GO:0008360 regulation of cell shape [PMID:12477789],EXISTENCE:genetic interaction:GO:0030837 negative regulation of actin filament polymerization [PMID:19217430],EXISTENCE:genetic interaction:GO:0032465 regulation of cytokinesis [PMID:24828508],EXISTENCE:genetic interaction:GO:0090337 regulation of formin-nucleated actin cable assembly [PMID:24828508],EXISTENCE:mutant phenotype:GO:0006355 regulation of transcription%2C DNA-templated [PMID:15601868],EXISTENCE:mutant phenotype:GO:0007010 cytoskeleton organization [PMID:16107882],EXISTENCE:mutant phenotype:GO:0019888 protein phosphatase regulator activity [PMID:16107882],EXISTENCE:mutant phenotype:GO:0030837 negative regulation of actin filament polymerization [PMID:19217430],EXISTENCE:mutant phenotype:GO:0060627 regulation of vesicle-mediated transport [PMID:24828508];gbkey=CDS;gene=BUD14;locus_tag=YAR014C;product=protein phosphatase regulator BUD14;protein_id=NP_009408.3
Chr01 RefSeq gene 169375 170295 . + . ID=gene-YAR015W;Dbxref=GeneID:851272;Name=ADE1;end_range=170295,.;gbkey=Gene;gene=ADE1;gene_biotype=protein_coding;locus_tag=YAR015W;partial=true;start_range=.,169375
Chr01 RefSeq mRNA 169375 170295 . + . ID=rna-NM_001178216.1;Parent=gene-YAR015W;Dbxref=GeneID:851272,Genbank:NM_001178216.1;Name=NM_001178216.1;end_range=170295,.;gbkey=mRNA;gene=ADE1;locus_tag=YAR015W;partial=true;product=phosphoribosylaminoimidazolesuccinocarboxamide synthase;start_range=.,169375;transcript_id=NM_001178216.1
Chr01 RefSeq exon 169375 170295 . + . ID=exon-NM_001178216.1-1;Parent=rna-NM_001178216.1;Dbxref=GeneID:851272,Genbank:NM_001178216.1;end_range=170295,.;gbkey=mRNA;gene=ADE1;locus_tag=YAR015W;partial=true;product=phosphoribosylaminoimidazolesuccinocarboxamide synthase;start_range=.,169375;transcript_id=NM_001178216.1
Chr01 RefSeq CDS 169375 170295 . + 0 ID=cds-NP_009409.1;Parent=rna-NM_001178216.1;Dbxref=SGD:S000000070,GeneID:851272,Genbank:NP_009409.1;Name=NP_009409.1;Note=N-succinyl-5-aminoimidazole-4-carboxamide ribotide synthetase%3B required for 'de novo' purine nucleotide biosynthesis%3B red pigment accumulates in mutant cells deprived of adenine%3B protein abundance increases in response to DNA replication stress;experiment=EXISTENCE:direct assay:GO:0004639 phosphoribosylaminoimidazolesuccinocarboxamide synthase activity [PMID:1756975],EXISTENCE:direct assay:GO:0005634 nucleus [PMID:14562095],EXISTENCE:direct assay:GO:0005737 cytoplasm [PMID:14562095],EXISTENCE:direct assay:GO:0006164 purine nucleotide biosynthetic process [PMID:1756975],EXISTENCE:direct assay:GO:0006189 'de novo' IMP biosynthetic process [PMID:1756975],EXISTENCE:mutant phenotype:GO:0004639 phosphoribosylaminoimidazolesuccinocarboxamide synthase activity [PMID:5767024|PMID:5767025],EXISTENCE:mutant phenotype:GO:0006164 purine nucleotide biosynthetic process [PMID:5767024|PMID:5767025],EXISTENCE:mutant phenotype:GO:0006189 'de novo' IMP biosynthetic process [PMID:5767024|PMID:5767025];gbkey=CDS;gene=ADE1;locus_tag=YAR015W;product=phosphoribosylaminoimidazolesuccinocarboxamide synthase;protein_id=NP_009409.1
Chr01 RefSeq gene 170396 171703 . - . ID=gene-YAR018C;Dbxref=GeneID:851273;Name=KIN3;end_range=171703,.;gbkey=Gene;gene=KIN3;gene_biotype=protein_coding;gene_synonym=FUN52,NPK1;locus_tag=YAR018C;partial=true;start_range=.,170396
Chr01 RefSeq mRNA 170396 171703 . - . ID=rna-NM_001178217.1;Parent=gene-YAR018C;Dbxref=GeneID:851273,Genbank:NM_001178217.1;Name=NM_001178217.1;end_range=171703,.;gbkey=mRNA;gene=KIN3;locus_tag=YAR018C;partial=true;product=serine/threonine protein kinase KIN3;start_range=.,170396;transcript_id=NM_001178217.1
Chr01 RefSeq exon 170396 171703 . - . ID=exon-NM_001178217.1-1;Parent=rna-NM_001178217.1;Dbxref=GeneID:851273,Genbank:NM_001178217.1;end_range=171703,.;gbkey=mRNA;gene=KIN3;locus_tag=YAR018C;partial=true;product=serine/threonine protein kinase KIN3;start_range=.,170396;transcript_id=NM_001178217.1
Chr01 RefSeq CDS 170396 171703 . - 0 ID=cds-NP_009410.1;Parent=rna-NM_001178217.1;Dbxref=SGD:S000000071,GeneID:851273,Genbank:NP_009410.1;Name=NP_009410.1;Note=Nonessential serine/threonine protein kinase%3B possible role in DNA damage response%3B influences tolerance to high levels of ethanol;experiment=EXISTENCE:direct assay:GO:0004672 protein kinase activity [PMID:16319894],EXISTENCE:direct assay:GO:0006468 protein phosphorylation [PMID:16319894],EXISTENCE:mutant phenotype:GO:0007059 chromosome segregation [PMID:12386167];gbkey=CDS;gene=KIN3;locus_tag=YAR018C;product=serine/threonine protein kinase KIN3;protein_id=NP_009410.1
Chr01 RefSeq gene 172211 175135 . - . ID=gene-YAR019C;Dbxref=GeneID:851274;Name=CDC15;end_range=175135,.;gbkey=Gene;gene=CDC15;gene_biotype=protein_coding;gene_synonym=LYT1,RLT1;locus_tag=YAR019C;partial=true;start_range=.,172211
Chr01 RefSeq mRNA 172211 175135 . - . ID=rna-NM_001178218.2;Parent=gene-YAR019C;Dbxref=GeneID:851274,Genbank:NM_001178218.2;Name=NM_001178218.2;end_range=175135,.;gbkey=mRNA;gene=CDC15;locus_tag=YAR019C;partial=true;product=serine/threonine protein kinase CDC15;start_range=.,172211;transcript_id=NM_001178218.2
Chr01 RefSeq exon 172211 175135 . - . ID=exon-NM_001178218.2-1;Parent=rna-NM_001178218.2;Dbxref=GeneID:851274,Genbank:NM_001178218.2;end_range=175135,.;gbkey=mRNA;gene=CDC15;locus_tag=YAR019C;partial=true;product=serine/threonine protein kinase CDC15;start_range=.,172211;transcript_id=NM_001178218.2
Chr01 RefSeq CDS 172211 175135 . - 0 ID=cds-NP_009411.2;Parent=rna-NM_001178218.2;Dbxref=SGD:S000000072,GeneID:851274,Genbank:NP_009411.2;Name=NP_009411.2;Note=Hippo-like kinase of the Mitotic Exit Network%3B promotes exit by activating the Dbf2p kinase%3B component of a non-canonical Hippo pathway with Sps1p required for prospore membrane closure%2C spindle disassembly and sustained release of Cdc14p during meiotic anaphase II%3B complexes with Sps1p and contributes to its phosphorylation%3B phosphorylates the RNAPII CTD during mitosis%3B localizes to the bud neck and SPB during anaphase and telophase%3B relocalizes to the cytoplasm upon DNA replication stress;experiment=EXISTENCE:direct assay:GO:0004672 protein kinase activity [PMID:16319894],EXISTENCE:direct assay:GO:0004674 protein serine/threonine kinase activity [PMID:11404483|PMID:23579499],EXISTENCE:direct assay:GO:0005737 cytoplasm [PMID:22842922],EXISTENCE:direct assay:GO:0005816 spindle pole body [PMID:10662594|PMID:12832486],EXISTENCE:direct assay:GO:0005935 cellular bud neck [PMID:12832486],EXISTENCE:direct assay:GO:0006468 protein phosphorylation [PMID:16319894],EXISTENCE:direct assay:GO:0018105 peptidyl-serine phosphorylation [PMID:11404483],EXISTENCE:direct assay:GO:0018107 peptidyl-threonine phosphorylation [PMID:11404483],EXISTENCE:genetic interaction:GO:1903024 positive regulation of ascospore-type prospore membrane formation [PMID:32788308],EXISTENCE:mutant phenotype:GO:0000281 mitotic cytokinesis [PMID:11267871],EXISTENCE:mutant phenotype:GO:0004674 protein serine/threonine kinase activity [PMID:23579499],EXISTENCE:mutant phenotype:GO:0006468 protein phosphorylation [PMID:32788308],EXISTENCE:mutant phenotype:GO:0007096 regulation of exit from mitosis [PMID:11267871],EXISTENCE:mutant phenotype:GO:0018105 peptidyl-serine phosphorylation [PMID:23579499],EXISTENCE:mutant phenotype:GO:0018107 peptidyl-threonine phosphorylation [PMID:23579499],EXISTENCE:mutant phenotype:GO:0051229 meiotic spindle disassembly [PMID:17660551|PMID:32788308],EXISTENCE:mutant phenotype:GO:1903024 positive regulation of ascospore-type prospore membrane formation [PMID:32788308],EXISTENCE:mutant phenotype:GO:1904750 negative regulation of protein localization to nucleolus [PMID:32788308];gbkey=CDS;gene=CDC15;locus_tag=YAR019C;product=serine/threonine protein kinase CDC15;protein_id=NP_009411.2
Chr01 RefSeq origin_of_replication 176157 176404 . + . ID=id-Chr01:176157..176404;Dbxref=SGD:S000114488;Note=ARS110%3B Autonomously Replicating Sequence%3B originally referred to as ADE1 ARS;gbkey=rep_origin
Chr01 RefSeq gene 176856 177023 . - . ID=gene-YAR020C;Dbxref=GeneID:851275;Name=PAU7;end_range=177023,.;gbkey=Gene;gene=PAU7;gene_biotype=protein_coding;locus_tag=YAR020C;partial=true;start_range=.,176856
Chr01 RefSeq mRNA 176856 177023 . - . ID=rna-NM_001178219.1;Parent=gene-YAR020C;Dbxref=GeneID:851275,Genbank:NM_001178219.1;Name=NM_001178219.1;end_range=177023,.;gbkey=mRNA;gene=PAU7;locus_tag=YAR020C;partial=true;product=seripauperin PAU7;start_range=.,176856;transcript_id=NM_001178219.1
Chr01 RefSeq exon 176856 177023 . - . ID=exon-NM_001178219.1-1;Parent=rna-NM_001178219.1;Dbxref=GeneID:851275,Genbank:NM_001178219.1;end_range=177023,.;gbkey=mRNA;gene=PAU7;locus_tag=YAR020C;partial=true;product=seripauperin PAU7;start_range=.,176856;transcript_id=NM_001178219.1
Chr01 RefSeq CDS 176856 177023 . - 0 ID=cds-NP_009412.1;Parent=rna-NM_001178219.1;Dbxref=SGD:S000000073,GeneID:851275,Genbank:NP_009412.1;Name=NP_009412.1;Note=Member of the seripauperin multigene family%3B active during alcoholic fermentation%2C regulated by anaerobiosis%2C inhibited by oxygen%2C repressed by heme;gbkey=CDS;gene=PAU7;locus_tag=YAR020C;product=seripauperin PAU7;protein_id=NP_009412.1
Chr01 RefSeq gene 179281 179820 . - . ID=gene-YAR023C;Dbxref=GeneID:851276;Name=YAR023C;end_range=179820,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YAR023C;partial=true;start_range=.,179281
Chr01 RefSeq mRNA 179281 179820 . - . ID=rna-NM_001178220.2;Parent=gene-YAR023C;Dbxref=GeneID:851276,Genbank:NM_001178220.2;Name=NM_001178220.2;end_range=179820,.;gbkey=mRNA;locus_tag=YAR023C;partial=true;product=DUP240 family protein;start_range=.,179281;transcript_id=NM_001178220.2
Chr01 RefSeq exon 179281 179820 . - . ID=exon-NM_001178220.2-1;Parent=rna-NM_001178220.2;Dbxref=GeneID:851276,Genbank:NM_001178220.2;end_range=179820,.;gbkey=mRNA;locus_tag=YAR023C;partial=true;product=DUP240 family protein;start_range=.,179281;transcript_id=NM_001178220.2
Chr01 RefSeq CDS 179281 179820 . - 0 ID=cds-NP_009413.2;Parent=rna-NM_001178220.2;Dbxref=SGD:S000000074,GeneID:851276,Genbank:NP_009413.2;Name=NP_009413.2;Note=Putative integral membrane protein%3B member of DUP240 gene family;gbkey=CDS;locus_tag=YAR023C;product=DUP240 family protein;protein_id=NP_009413.2
Chr01 RefSeq gene 181141 181254 . + . ID=gene-YNCA0005W;Dbxref=GeneID:851277;Name=SUP56;gbkey=Gene;gene=SUP56;gene_biotype=tRNA;locus_tag=YNCA0005W
Chr01 RefSeq tRNA 181141 181254 . + . ID=rna-YNCA0005W;Parent=gene-YNCA0005W;Dbxref=SGD:S000006636,GeneID:851277;Note=Leucine tRNA (tRNA-Leu)%2C predicted by tRNAscan-SE analysis%3B can mutate to suppress amber nonsense mutations;experiment=EXISTENCE:curator inference:GO:0005829 cytosol [PMID:9023104],EXISTENCE:curator inference:GO:0006414 translational elongation [PMID:9023104];gbkey=tRNA;gene=SUP56;locus_tag=YNCA0005W;product=tRNA-Leu
Chr01 RefSeq exon 181141 181178 . + . ID=exon-YNCA0005W-1;Parent=rna-YNCA0005W;Dbxref=SGD:S000006636,GeneID:851277;Note=Leucine tRNA (tRNA-Leu)%2C predicted by tRNAscan-SE analysis%3B can mutate to suppress amber nonsense mutations;experiment=EXISTENCE:curator inference:GO:0005829 cytosol [PMID:9023104],EXISTENCE:curator inference:GO:0006414 translational elongation [PMID:9023104];gbkey=tRNA;gene=SUP56;locus_tag=YNCA0005W;product=tRNA-Leu
Chr01 RefSeq exon 181211 181254 . + . ID=exon-YNCA0005W-2;Parent=rna-YNCA0005W;Dbxref=SGD:S000006636,GeneID:851277;Note=Leucine tRNA (tRNA-Leu)%2C predicted by tRNAscan-SE analysis%3B can mutate to suppress amber nonsense mutations;experiment=EXISTENCE:curator inference:GO:0005829 cytosol [PMID:9023104],EXISTENCE:curator inference:GO:0006414 translational elongation [PMID:9023104];gbkey=tRNA;gene=SUP56;locus_tag=YNCA0005W;product=tRNA-Leu
Chr01 RefSeq gene 182522 182603 . - . ID=gene-YNCA0006C;Dbxref=GeneID:851278;Name=YNCA0006C;gbkey=Gene;gene_biotype=tRNA;locus_tag=YNCA0006C
Chr01 RefSeq tRNA 182522 182603 . - . ID=rna-YNCA0006C;Parent=gene-YNCA0006C;Dbxref=SGD:S000006719,GeneID:851278;Note=Serine tRNA (tRNA-Ser)%2C predicted by tRNAscan-SE analysis;experiment=EXISTENCE:curator inference:GO:0005829 cytosol [PMID:9023104],EXISTENCE:curator inference:GO:0006414 translational elongation [PMID:9023104],EXISTENCE:direct assay:GO:0030371 translation repressor activity [PMID:27609601],EXISTENCE:direct assay:GO:0043022 ribosome binding [PMID:27609601],EXISTENCE:direct assay:GO:0043555 regulation of translation in response to stress [PMID:27609601];gbkey=tRNA;locus_tag=YNCA0006C;product=tRNA-Ser
Chr01 RefSeq exon 182522 182603 . - . ID=exon-YNCA0006C-1;Parent=rna-YNCA0006C;Dbxref=SGD:S000006719,GeneID:851278;Note=Serine tRNA (tRNA-Ser)%2C predicted by tRNAscan-SE analysis;experiment=EXISTENCE:curator inference:GO:0005829 cytosol [PMID:9023104],EXISTENCE:curator inference:GO:0006414 translational elongation [PMID:9023104],EXISTENCE:direct assay:GO:0030371 translation repressor activity [PMID:27609601],EXISTENCE:direct assay:GO:0043022 ribosome binding [PMID:27609601],EXISTENCE:direct assay:GO:0043555 regulation of translation in response to stress [PMID:27609601];gbkey=tRNA;locus_tag=YNCA0006C;product=tRNA-Ser
Chr01 RefSeq long_terminal_repeat 182620 182959 . + . ID=id-Chr01:182620..182959;Dbxref=SGD:S000006795;Note=Ty3 LTR;gbkey=repeat_region;rpt_type=long_terminal_repeat
Chr01 RefSeq long_terminal_repeat 183142 183474 . + . ID=id-Chr01:183142..183474;Dbxref=SGD:S000006793;Note=Ty1 LTR;gbkey=repeat_region;rpt_type=long_terminal_repeat
Chr01 RefSeq gene 183770 184477 . + . ID=gene-YAR027W;Dbxref=GeneID:851279;Name=UIP3;end_range=184477,.;gbkey=Gene;gene=UIP3;gene_biotype=protein_coding;locus_tag=YAR027W;partial=true;start_range=.,183770
Chr01 RefSeq mRNA 183770 184477 . + . ID=rna-NM_001178221.1;Parent=gene-YAR027W;Dbxref=GeneID:851279,Genbank:NM_001178221.1;Name=NM_001178221.1;end_range=184477,.;gbkey=mRNA;gene=UIP3;locus_tag=YAR027W;partial=true;product=DUP240 family protein UIP3;start_range=.,183770;transcript_id=NM_001178221.1
Chr01 RefSeq exon 183770 184477 . + . ID=exon-NM_001178221.1-1;Parent=rna-NM_001178221.1;Dbxref=GeneID:851279,Genbank:NM_001178221.1;end_range=184477,.;gbkey=mRNA;gene=UIP3;locus_tag=YAR027W;partial=true;product=DUP240 family protein UIP3;start_range=.,183770;transcript_id=NM_001178221.1
Chr01 RefSeq CDS 183770 184477 . + 0 ID=cds-NP_009414.1;Parent=rna-NM_001178221.1;Dbxref=SGD:S000000075,GeneID:851279,Genbank:NP_009414.1;Name=NP_009414.1;Note=Putative integral membrane hypothetical protein%3B interacts with Ulp1p at the nuclear periphery%3B member of DUP240 gene family;experiment=EXISTENCE:direct assay:GO:0000329 fungal-type vacuole membrane [PMID:26928762],EXISTENCE:direct assay:GO:0005635 nuclear envelope [PMID:11056382];gbkey=CDS;gene=UIP3;locus_tag=YAR027W;product=DUP240 family protein UIP3;protein_id=NP_009414.1
Chr01 RefSeq gene 184892 185596 . + . ID=gene-YAR028W;Dbxref=GeneID:851280;Name=YAR028W;end_range=185596,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YAR028W;partial=true;start_range=.,184892
Chr01 RefSeq mRNA 184892 185596 . + . ID=rna-NM_001178222.1;Parent=gene-YAR028W;Dbxref=GeneID:851280,Genbank:NM_001178222.1;Name=NM_001178222.1;end_range=185596,.;gbkey=mRNA;locus_tag=YAR028W;partial=true;product=DUP240 family protein;start_range=.,184892;transcript_id=NM_001178222.1
Chr01 RefSeq exon 184892 185596 . + . ID=exon-NM_001178222.1-1;Parent=rna-NM_001178222.1;Dbxref=GeneID:851280,Genbank:NM_001178222.1;end_range=185596,.;gbkey=mRNA;locus_tag=YAR028W;partial=true;product=DUP240 family protein;start_range=.,184892;transcript_id=NM_001178222.1
Chr01 RefSeq CDS 184892 185596 . + 0 ID=cds-NP_009415.1;Parent=rna-NM_001178222.1;Dbxref=SGD:S000000076,GeneID:851280,Genbank:NP_009415.1;Name=NP_009415.1;Note=Putative integral membrane protein%3B member of DUP240 gene family%3B GFP-fusion protein is induced in response to the DNA-damaging agent MMS;experiment=EXISTENCE:direct assay:GO:0000329 fungal-type vacuole membrane [PMID:19001347|PMID:26928762];gbkey=CDS;locus_tag=YAR028W;product=DUP240 family protein;protein_id=NP_009415.1
Chr01 RefSeq gene 186321 186545 . + . ID=gene-YAR029W;Dbxref=GeneID:851281;Name=YAR029W;end_range=186545,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YAR029W;partial=true;start_range=.,186321
Chr01 RefSeq mRNA 186321 186545 . + . ID=rna-NM_001178223.1;Parent=gene-YAR029W;Dbxref=GeneID:851281,Genbank:NM_001178223.1;Name=NM_001178223.1;end_range=186545,.;gbkey=mRNA;locus_tag=YAR029W;partial=true;product=DUP240 family protein;start_range=.,186321;transcript_id=NM_001178223.1
Chr01 RefSeq exon 186321 186545 . + . ID=exon-NM_001178223.1-1;Parent=rna-NM_001178223.1;Dbxref=GeneID:851281,Genbank:NM_001178223.1;end_range=186545,.;gbkey=mRNA;locus_tag=YAR029W;partial=true;product=DUP240 family protein;start_range=.,186321;transcript_id=NM_001178223.1
Chr01 RefSeq CDS 186321 186545 . + 0 ID=cds-NP_009416.1;Parent=rna-NM_001178223.1;Dbxref=SGD:S000000077,GeneID:851281,Genbank:NP_009416.1;Name=NP_009416.1;Note=Member of DUP240 gene family but contains no transmembrane domains%3B green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern;experiment=EXISTENCE:mutant phenotype:GO:0005737 cytoplasm [PMID:12101299];gbkey=CDS;locus_tag=YAR029W;product=DUP240 family protein;protein_id=NP_009416.1
Chr01 RefSeq gene 186836 187732 . + . ID=gene-YAR031W;Dbxref=GeneID:851282;Name=PRM9;end_range=187732,.;gbkey=Gene;gene=PRM9;gene_biotype=protein_coding;locus_tag=YAR031W;partial=true;start_range=.,186836
Chr01 RefSeq mRNA 186836 187732 . + . ID=rna-NM_001178224.1;Parent=gene-YAR031W;Dbxref=GeneID:851282,Genbank:NM_001178224.1;Name=NM_001178224.1;end_range=187732,.;gbkey=mRNA;gene=PRM9;locus_tag=YAR031W;partial=true;product=pheromone-regulated DUP240 family protein PRM9;start_range=.,186836;transcript_id=NM_001178224.1
Chr01 RefSeq exon 186836 187732 . + . ID=exon-NM_001178224.1-1;Parent=rna-NM_001178224.1;Dbxref=GeneID:851282,Genbank:NM_001178224.1;end_range=187732,.;gbkey=mRNA;gene=PRM9;locus_tag=YAR031W;partial=true;product=pheromone-regulated DUP240 family protein PRM9;start_range=.,186836;transcript_id=NM_001178224.1
Chr01 RefSeq CDS 186836 187732 . + 0 ID=cds-NP_009418.1;Parent=rna-NM_001178224.1;Dbxref=SGD:S000000078,GeneID:851282,Genbank:NP_009418.1;Name=NP_009418.1;Note=Pheromone-regulated protein%3B contains 3 predicted transmembrane segments and an FF sequence%2C a motif involved in COPII binding%3B member of DUP240 gene family%3B PRM9 has a paralog%2C PRM8%2C that arose from a segmental duplication;experiment=EXISTENCE:direct assay:GO:0005783 endoplasmic reticulum [PMID:26928762],EXISTENCE:direct assay:GO:0005886 plasma membrane [PMID:12101299],EXISTENCE:physical interaction:GO:0005783 endoplasmic reticulum [PMID:12925749];gbkey=CDS;gene=PRM9;locus_tag=YAR031W;product=pheromone-regulated DUP240 family protein PRM9;protein_id=NP_009418.1
Chr01 RefSeq gene 188107 188811 . + . ID=gene-YAR033W;Dbxref=GeneID:851284;Name=MST28;end_range=188811,.;gbkey=Gene;gene=MST28;gene_biotype=protein_coding;locus_tag=YAR033W;partial=true;start_range=.,188107
Chr01 RefSeq mRNA 188107 188811 . + . ID=rna-NM_001178225.1;Parent=gene-YAR033W;Dbxref=GeneID:851284,Genbank:NM_001178225.1;Name=NM_001178225.1;end_range=188811,.;gbkey=mRNA;gene=MST28;locus_tag=YAR033W;partial=true;product=DUP240 family protein MST28;start_range=.,188107;transcript_id=NM_001178225.1
Chr01 RefSeq exon 188107 188811 . + . ID=exon-NM_001178225.1-1;Parent=rna-NM_001178225.1;Dbxref=GeneID:851284,Genbank:NM_001178225.1;end_range=188811,.;gbkey=mRNA;gene=MST28;locus_tag=YAR033W;partial=true;product=DUP240 family protein MST28;start_range=.,188107;transcript_id=NM_001178225.1
Chr01 RefSeq CDS 188107 188811 . + 0 ID=cds-NP_009419.1;Parent=rna-NM_001178225.1;Dbxref=SGD:S000000079,GeneID:851284,Genbank:NP_009419.1;Name=NP_009419.1;Note=Putative integral membrane protein%2C involved in vesicle formation%3B forms complex with Mst27p%3B member of DUP240 gene family%3B binds COPI and COPII vesicles%3B MST28 has a paralog%2C MST27%2C that arose from a segmental duplication;experiment=EXISTENCE:direct assay:GO:0005783 endoplasmic reticulum [PMID:26928762|PMID:12925749],EXISTENCE:direct assay:GO:0005794 Golgi apparatus [PMID:12925749],EXISTENCE:direct assay:GO:0016021 integral component of membrane [PMID:12925749],EXISTENCE:genetic interaction:GO:0016050 vesicle organization [PMID:12925749],EXISTENCE:mutant phenotype:GO:0005783 endoplasmic reticulum [PMID:12101299],EXISTENCE:mutant phenotype:GO:0005886 plasma membrane [PMID:12101299],EXISTENCE:physical interaction:GO:0016050 vesicle organization [PMID:12925749];gbkey=CDS;gene=MST28;locus_tag=YAR033W;product=DUP240 family protein MST28;protein_id=NP_009419.1
Chr01 RefSeq long_terminal_repeat 189426 189757 . + . ID=id-Chr01:189426..189757;Dbxref=SGD:S000006794;Note=Ty2 LTR;gbkey=repeat_region;rpt_type=long_terminal_repeat
Chr01 RefSeq gene 190193 192256 . + . ID=gene-YAR035W;Dbxref=GeneID:851285;Name=YAT1;end_range=192256,.;gbkey=Gene;gene=YAT1;gene_biotype=protein_coding;locus_tag=YAR035W;partial=true;start_range=.,190193
Chr01 RefSeq mRNA 190193 192256 . + . ID=rna-NM_001178226.1;Parent=gene-YAR035W;Dbxref=GeneID:851285,Genbank:NM_001178226.1;Name=NM_001178226.1;end_range=192256,.;gbkey=mRNA;gene=YAT1;locus_tag=YAR035W;partial=true;product=carnitine O-acetyltransferase YAT1;start_range=.,190193;transcript_id=NM_001178226.1
Chr01 RefSeq exon 190193 192256 . + . ID=exon-NM_001178226.1-1;Parent=rna-NM_001178226.1;Dbxref=GeneID:851285,Genbank:NM_001178226.1;end_range=192256,.;gbkey=mRNA;gene=YAT1;locus_tag=YAR035W;partial=true;product=carnitine O-acetyltransferase YAT1;start_range=.,190193;transcript_id=NM_001178226.1
Chr01 RefSeq CDS 190193 192256 . + 0 ID=cds-NP_009420.1;Parent=rna-NM_001178226.1;Dbxref=SGD:S000000080,GeneID:851285,Genbank:NP_009420.1;Name=NP_009420.1;Note=Outer mitochondrial carnitine acetyltransferase%3B minor ethanol-inducible enzyme involved in transport of activated acyl groups from the cytoplasm into the mitochondrial matrix%3B phosphorylated;experiment=EXISTENCE:direct assay:GO:0005739 mitochondrion [PMID:18427809|PMID:11914276|PMID:14576278|PMID:16823961],EXISTENCE:mutant phenotype:GO:0009437 carnitine metabolic process [PMID:11329169];gbkey=CDS;gene=YAT1;locus_tag=YAR035W;product=carnitine O-acetyltransferase YAT1;protein_id=NP_009420.1
Chr01 RefSeq gene 192337 192417 . - . ID=gene-YAR035C-A;Dbxref=GeneID:1466430;Name=YAR035C-A;end_range=192417,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YAR035C-A;partial=true;start_range=.,192337
Chr01 RefSeq mRNA 192337 192417 . - . ID=rna-NM_001184583.1;Parent=gene-YAR035C-A;Dbxref=GeneID:1466430,Genbank:NM_001184583.1;Name=NM_001184583.1;end_range=192417,.;gbkey=mRNA;locus_tag=YAR035C-A;partial=true;product=uncharacterized protein;start_range=.,192337;transcript_id=NM_001184583.1
Chr01 RefSeq exon 192337 192417 . - . ID=exon-NM_001184583.1-1;Parent=rna-NM_001184583.1;Dbxref=GeneID:1466430,Genbank:NM_001184583.1;end_range=192417,.;gbkey=mRNA;locus_tag=YAR035C-A;partial=true;product=uncharacterized protein;start_range=.,192337;transcript_id=NM_001184583.1
Chr01 RefSeq CDS 192337 192417 . - 0 ID=cds-NP_878042.1;Parent=rna-NM_001184583.1;Dbxref=SGD:S000028595,GeneID:1466430,Genbank:NP_878042.1;Name=NP_878042.1;Note=hypothetical protein%3B emerging ORF that arose de novo from non-genic locus%3B identified by gene-trapping%2C microarray-based expression analysis%2C and genome-wide homology searching%3B localizes to mitochondria;experiment=EXISTENCE:direct assay:GO:0005739 mitochondrion [PMID:32034123];gbkey=CDS;locus_tag=YAR035C-A;product=uncharacterized protein;protein_id=NP_878042.1
Chr01 RefSeq gene 192619 196185 . + . ID=gene-YAR042W;Dbxref=GeneID:851286;Name=SWH1;end_range=196185,.;gbkey=Gene;gene=SWH1;gene_biotype=protein_coding;gene_synonym=OSH1,YAR044W;locus_tag=YAR042W;partial=true;start_range=.,192619
Chr01 RefSeq mRNA 192619 196185 . + . ID=rna-NM_001178227.1;Parent=gene-YAR042W;Dbxref=GeneID:851286,Genbank:NM_001178227.1;Name=NM_001178227.1;end_range=196185,.;gbkey=mRNA;gene=SWH1;locus_tag=YAR042W;partial=true;product=oxysterol-binding protein related protein SWH1;start_range=.,192619;transcript_id=NM_001178227.1
Chr01 RefSeq exon 192619 196185 . + . ID=exon-NM_001178227.1-1;Parent=rna-NM_001178227.1;Dbxref=GeneID:851286,Genbank:NM_001178227.1;end_range=196185,.;gbkey=mRNA;gene=SWH1;locus_tag=YAR042W;partial=true;product=oxysterol-binding protein related protein SWH1;start_range=.,192619;transcript_id=NM_001178227.1
Chr01 RefSeq CDS 192619 196185 . + 0 ID=cds-NP_009421.3;Parent=rna-NM_001178227.1;Dbxref=SGD:S000000081,GeneID:851286,Genbank:NP_009421.3;Name=NP_009421.3;Note=Protein similar to mammalian oxysterol-binding protein%3B contains ankyrin repeats and FFAT motif%3B interacts with ER anchor Scs2p at the nucleus-vacuole junction%3B regulated by sterol binding%3B SWH1 has a paralog%2C OSH2%2C that arose from the whole genome duplication;experiment=EXISTENCE:direct assay:GO:0000138 Golgi trans cisterna [PMID:11408574],EXISTENCE:direct assay:GO:0005635 nuclear envelope [PMID:12727870],EXISTENCE:direct assay:GO:0005769 early endosome [PMID:11408574],EXISTENCE:direct assay:GO:0005783 endoplasmic reticulum [PMID:12727870],EXISTENCE:direct assay:GO:0008289 lipid binding [PMID:20008566],EXISTENCE:direct assay:GO:0015918 sterol transport [PMID:20008566],EXISTENCE:direct assay:GO:0071561 nucleus-vacuole junction [PMID:25420878],EXISTENCE:direct assay:GO:0120015 sterol transfer activity [PMID:20008566],EXISTENCE:genetic interaction:GO:0006887 exocytosis [PMID:17004323],EXISTENCE:genetic interaction:GO:0006897 endocytosis [PMID:15173322],EXISTENCE:genetic interaction:GO:0015918 sterol transport [PMID:16585271],EXISTENCE:genetic interaction:GO:0030011 maintenance of cell polarity [PMID:17004323],EXISTENCE:genetic interaction:GO:0034727 piecemeal microautophagy of the nucleus [PMID:15367582];gbkey=CDS;gene=SWH1;locus_tag=YAR042W;product=oxysterol-binding protein related protein SWH1;protein_id=NP_009421.3
Chr01 RefSeq gene 203403 208016 . + . ID=gene-YAR050W;Dbxref=GeneID:851289;Name=FLO1;end_range=208016,.;gbkey=Gene;gene=FLO1;gene_biotype=protein_coding;gene_synonym=FLO2,FLO4;locus_tag=YAR050W;partial=true;start_range=.,203403
Chr01 RefSeq mRNA 203403 208016 . + . ID=rna-NM_001178230.1;Parent=gene-YAR050W;Dbxref=GeneID:851289,Genbank:NM_001178230.1;Name=NM_001178230.1;end_range=208016,.;gbkey=mRNA;gene=FLO1;locus_tag=YAR050W;partial=true;product=flocculin FLO1;start_range=.,203403;transcript_id=NM_001178230.1
Chr01 RefSeq exon 203403 208016 . + . ID=exon-NM_001178230.1-1;Parent=rna-NM_001178230.1;Dbxref=GeneID:851289,Genbank:NM_001178230.1;end_range=208016,.;gbkey=mRNA;gene=FLO1;locus_tag=YAR050W;partial=true;product=flocculin FLO1;start_range=.,203403;transcript_id=NM_001178230.1
Chr01 RefSeq CDS 203403 208016 . + 0 ID=cds-NP_009424.1;Parent=rna-NM_001178230.1;Dbxref=SGD:S000000084,GeneID:851289,Genbank:NP_009424.1;Name=NP_009424.1;Note=Lectin-like protein involved in flocculation%3B cell wall protein that binds mannose chains on the surface of other cells%2C confers floc-forming ability that is chymotrypsin sensitive and heat resistant%3B important for co-flocculation with other yeasts%2C mediating interaction with specific species%3B FLO1 has a paralog%2C FLO5%2C that arose from a segmental duplication;experiment=EXISTENCE:direct assay:GO:0009277 fungal-type cell wall [PMID:11956747|PMID:9483793],EXISTENCE:direct assay:GO:0071944 cell periphery [PMID:26928762],EXISTENCE:mutant phenotype:GO:0000128 flocculation [PMID:19013280|PMID:19420680|PMID:23383507|PMID:11027318|PMID:7483845],EXISTENCE:mutant phenotype:GO:0005537 mannose binding [PMID:9851992],EXISTENCE:mutant phenotype:GO:0034605 cellular response to heat [PMID:19013280],EXISTENCE:mutant phenotype:GO:0070301 cellular response to hydrogen peroxide [PMID:19013280],EXISTENCE:mutant phenotype:GO:0071361 cellular response to ethanol [PMID:19013280];gbkey=CDS;gene=FLO1;locus_tag=YAR050W;product=flocculin FLO1;protein_id=NP_009424.1
Chr01 RefSeq long_terminal_repeat 209448 209778 . - . ID=id-Chr01:209448..209778;Dbxref=SGD:S000006791;Note=Ty1 LTR;gbkey=repeat_region;rpt_type=long_terminal_repeat
Chr01 RefSeq origin_of_replication 214888 215644 . + . ID=id-Chr01:214888..215644;Dbxref=SGD:S000121256;Note=ARS111%3B Autonomously Replicating Sequence;gbkey=rep_origin
Chr01 RefSeq pseudogene 218140 219145 . + . ID=gene-YAR061W;Dbxref=SGD:S000000087,GeneID:851292;Name=YAR061W;Note=Pseudogenic fragment with similarity to flocculins%3B YAR061W has a paralog%2C YHR212W-A%2C that arose from a segmental duplication;gbkey=Gene;gene_biotype=pseudogene;gene_synonym=YAR062W;locus_tag=YAR061W;pseudo=true
Chr01 RefSeq mRNA 218140 219145 . + . ID=rna-YAR061W;Parent=gene-YAR061W;Dbxref=GeneID:851292,SGD:S000000087;gbkey=mRNA;locus_tag=YAR061W;pseudo=true
Chr01 RefSeq exon 218140 219145 . + . ID=exon-YAR061W-1;Parent=rna-YAR061W;Dbxref=GeneID:851292,SGD:S000000087;gbkey=mRNA;locus_tag=YAR061W;pseudo=true
Chr01 RefSeq gene 220198 220497 . + . ID=gene-YAR064W;Dbxref=GeneID:851294;Name=YAR064W;end_range=220497,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YAR064W;partial=true;start_range=.,220198
Chr01 RefSeq mRNA 220198 220497 . + . ID=rna-NM_001178235.1;Parent=gene-YAR064W;Dbxref=GeneID:851294,Genbank:NM_001178235.1;Name=NM_001178235.1;end_range=220497,.;gbkey=mRNA;locus_tag=YAR064W;partial=true;product=uncharacterized protein;start_range=.,220198;transcript_id=NM_001178235.1
Chr01 RefSeq exon 220198 220497 . + . ID=exon-NM_001178235.1-1;Parent=rna-NM_001178235.1;Dbxref=GeneID:851294,Genbank:NM_001178235.1;end_range=220497,.;gbkey=mRNA;locus_tag=YAR064W;partial=true;product=uncharacterized protein;start_range=.,220198;transcript_id=NM_001178235.1
Chr01 RefSeq CDS 220198 220497 . + 0 ID=cds-NP_009429.1;Parent=rna-NM_001178235.1;Dbxref=SGD:S000000089,GeneID:851294,Genbank:NP_009429.1;Name=NP_009429.1;Note=Pseudogenic fragment with similarity to flocculins%3B YAR064W has a paralog%2C YHR213W-B%2C that arose from a segmental duplication;gbkey=CDS;locus_tag=YAR064W;product=uncharacterized protein;protein_id=NP_009429.1
Chr01 RefSeq gene 221049 221660 . + . ID=gene-YAR066W;Dbxref=GeneID:851295;Name=YAR066W;end_range=221660,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YAR066W;partial=true;start_range=.,221049
Chr01 RefSeq mRNA 221049 221660 . + . ID=rna-NM_001180045.1;Parent=gene-YAR066W;Dbxref=GeneID:851295,Genbank:NM_001180045.1;Name=NM_001180045.1;end_range=221660,.;gbkey=mRNA;locus_tag=YAR066W;partial=true;product=uncharacterized protein;start_range=.,221049;transcript_id=NM_001180045.1
Chr01 RefSeq exon 221049 221660 . + . ID=exon-NM_001180045.1-1;Parent=rna-NM_001180045.1;Dbxref=GeneID:851295,Genbank:NM_001180045.1;end_range=221660,.;gbkey=mRNA;locus_tag=YAR066W;partial=true;product=uncharacterized protein;start_range=.,221049;transcript_id=NM_001180045.1
Chr01 RefSeq CDS 221049 221660 . + 0 ID=cds-NP_009430.1;Parent=rna-NM_001180045.1;Dbxref=SGD:S000002144,GeneID:851295,Genbank:NP_009430.1;Name=NP_009430.1;Note=Putative GPI protein%3B SWAT-GFP and mCherry fusion proteins localize to the endoplasmic reticulum and vacuole respectively%3B YAR066W has a paralog%2C YHR214W%2C that arose from a segmental duplication;gbkey=CDS;locus_tag=YAR066W;product=uncharacterized protein;protein_id=NP_009430.1
Chr01 RefSeq gene 222406 222891 . + . ID=gene-YAR068W;Dbxref=GeneID:851296;Name=YAR068W;end_range=222891,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=YAR068W;partial=true;start_range=.,222406
Chr01 RefSeq mRNA 222406 222891 . + . ID=rna-NM_001178236.1;Parent=gene-YAR068W;Dbxref=GeneID:851296,Genbank:NM_001178236.1;Name=NM_001178236.1;end_range=222891,.;gbkey=mRNA;locus_tag=YAR068W;partial=true;product=uncharacterized protein;start_range=.,222406;transcript_id=NM_001178236.1
Chr01 RefSeq exon 222406 222891 . + . ID=exon-NM_001178236.1-1;Parent=rna-NM_001178236.1;Dbxref=GeneID:851296,Genbank:NM_001178236.1;end_range=222891,.;gbkey=mRNA;locus_tag=YAR068W;partial=true;product=uncharacterized protein;start_range=.,222406;transcript_id=NM_001178236.1
Chr01 RefSeq CDS 222406 222891 . + 0 ID=cds-NP_009431.1;Parent=rna-NM_001178236.1;Dbxref=SGD:S000000091,GeneID:851296,Genbank:NP_009431.1;Name=NP_009431.1;Note=Fungal-specific hypothetical protein%3B induced in respiratory-deficient cells%3B YAR068W has a paralog%2C YHR214W-A%2C that arose from a segmental duplication;gbkey=CDS;locus_tag=YAR068W;product=uncharacterized protein;protein_id=NP_009431.1
Chr01 RefSeq origin_of_replication 222880 224046 . + . ID=id-Chr01:222880..224046;Dbxref=SGD:S000121257;Note=ARS112%3B Autonomously Replicating Sequence;gbkey=rep_origin
Chr01 RefSeq gene 225460 226863 . + . ID=gene-YAR071W;Dbxref=GeneID:851299;Name=PHO11;end_range=226863,.;gbkey=Gene;gene=PHO11;gene_biotype=protein_coding;locus_tag=YAR071W;partial=true;start_range=.,225460
Chr01 RefSeq mRNA 225460 226863 . + . ID=rna-NM_001178239.1;Parent=gene-YAR071W;Dbxref=GeneID:851299,Genbank:NM_001178239.1;Name=NM_001178239.1;end_range=226863,.;gbkey=mRNA;gene=PHO11;locus_tag=YAR071W;partial=true;product=acid phosphatase PHO11;start_range=.,225460;transcript_id=NM_001178239.1
Chr01 RefSeq exon 225460 226863 . + . ID=exon-NM_001178239.1-1;Parent=rna-NM_001178239.1;Dbxref=GeneID:851299,Genbank:NM_001178239.1;end_range=226863,.;gbkey=mRNA;gene=PHO11;locus_tag=YAR071W;partial=true;product=acid phosphatase PHO11;start_range=.,225460;transcript_id=NM_001178239.1
Chr01 RefSeq CDS 225460 226863 . + 0 ID=cds-NP_009434.1;Parent=rna-NM_001178239.1;Dbxref=SGD:S000000094,GeneID:851299,Genbank:NP_009434.1;Name=NP_009434.1;Note=One of three repressible acid phosphatases%3B glycoprotein that is transported to the cell surface by the secretory pathway%3B induced by phosphate starvation and coordinately regulated by PHO4 and PHO2%3B PHO11 has a paralog%2C PHO12%2C that arose from a segmental duplication;experiment=EXISTENCE:direct assay:GO:0003993 acid phosphatase activity [PMID:8817921],EXISTENCE:direct assay:GO:0005576 extracellular region [PMID:8817921],EXISTENCE:direct assay:GO:0071944 cell periphery [PMID:26928762];gbkey=CDS;gene=PHO11;locus_tag=YAR071W;product=acid phosphatase PHO11;protein_id=NP_009434.1
Chr01 RefSeq telomere 229411 230218 . + . ID=id-Chr01:229411..230218;Dbxref=SGD:S000028937;Note=TEL01R%3B Telomeric region on the right arm of Chromosome I%3B composed of an X element core sequence and a short terminal stretch of telomeric repeats;gbkey=telomere