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I am aware of that the ArchR package was developed primarily for the analysis of large scale scATAC-seq. Just out of curiosity, if this package is appropriate for the analysis of single cell ChIP-seq data. For example, for single cell ChIP-seq intentionally to capture a specific transcription factor binding sites? the genome-wide tile matrix can be even sparser compared to scATAC-seq.
Many thanks!
Best,
Meiyuan
The text was updated successfully, but these errors were encountered:
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can I use ArchR for single cell ChIP-seq data like Transcription Factor binding site, or for single cell histone modification data (H3K4me)?
can I use ArchR for single cell ChIP-seq?
May 20, 2024
Hi,
I am aware of that the ArchR package was developed primarily for the analysis of large scale scATAC-seq. Just out of curiosity, if this package is appropriate for the analysis of single cell ChIP-seq data. For example, for single cell ChIP-seq intentionally to capture a specific transcription factor binding sites? the genome-wide tile matrix can be even sparser compared to scATAC-seq.
Many thanks!
Best,
Meiyuan
The text was updated successfully, but these errors were encountered: