This is the schedule and materials for the Global Invertebrate Genomics Alliance (GIGA) Bioinformatics Workshop, which will be held in Curaçao at the Hilton Hotel from Oct 19-21, 2018.
This workshop runs under a Code of Conduct. Please respect it and be excellent to each other!
If you are not comfortable working on the command line, please work through some of this command-line bootcamp before the workshop. In addition, BASH training videos are freely available through the NH-INBRE program, the UNH Bioinformatics Core facility. Please start with section 2 or 3.
Instructors:
- Titus Brown
- Jean-Francois Flot
- Bishoy Hanna
- Lisa Johnson
- Adelaide Rhodes
- Joseph Sevigny
- Devin Thomas
Notes from the course:
Arrivals and check-in, Curaçao Hilton
- 8:00 AM - Registration Symposium and Contributed Talks - Please see Final Program
- 8:30 AM - Welcome, Introduction
- 8:45 - Booting from Jetstream and RStudio Server (Johnson)
- 9:15 - Command line/BASH primer (Sevigny)
- 10:30 - 11:00 AM Coffee Break
- 11:00 - 12:30 PM Annotation/Assembly - Intro to hmmer and blast (Rhodes)
- 12:30 - 1:30 PM Lunch
- 1:30 - 3:30 PM Annotation/Assembly - Assembly Primer, hands-on (Flot)
- 3:30 - 4:00 PM Coffee Break
- 4:00 - 6:00 PM Annotation/Assembly - Assembly Practical (Flot)
- 8:30 AM - 10:30 AM Annotation/Assembly - Gene Prediction & Discussion (Hanna)
- 10:30 - 11:00 AM Coffee Break
- 11:00 - 12:30 PM QIIME2
- 12:30 - 1:30 PM Lunch
- 1:30 - 3:30 PM QIIME2
- 3:30 - 4:00 PM Coffee Break
- 4:00 - 6:00 PM QIIME2