docker-compose.yml

services:
  lapisOpen:
    image: ghcr.io/genspectrum/lapis:${LAPIS_TAG}
    ports:
      - "8090:8080"
    command: --silo.url=http://silo:8081
    volumes:
      - type: bind
        source: ../lapis-e2e/testData/singleSegmented/testDatabaseConfig.yaml
        target: /workspace/database_config.yaml
        read_only: true
      - type: bind
        source: ../lapis-e2e/testData/singleSegmented/reference_genomes.json
        target: /workspace/reference_genomes.json
        read_only: true

  silo:
    image: ghcr.io/genspectrum/lapis-silo:${SILO_TAG}
    ports:
      - "8091:8081"
    command: api
    volumes:
      - ../lapis-e2e/testData/singleSegmented/output:/data
    depends_on:
      siloPreprocessing:
        condition: service_completed_successfully

  siloPreprocessing:
    image: ghcr.io/genspectrum/lapis-silo:${SILO_TAG}
    command: preprocessing
    volumes:
      - ../lapis-e2e/testData/singleSegmented:/preprocessing/input
      - ../lapis-e2e/testData/singleSegmented/output:/preprocessing/output
      - ../lapis-e2e/testData/singleSegmented/preprocessingConfig.yaml:/app/preprocessing_config.yaml
      - ../lapis-e2e/testData/singleSegmented/testDatabaseConfig.yaml:/preprocessing/input/database_config.yaml

  siloMultisegmented:
    image: ghcr.io/genspectrum/lapis-silo:${SILO_TAG}
    ports:
      - "8093:8081"
    command: api
    volumes:
      - ../lapis-e2e/testData/multiSegmented/output:/data
    depends_on:
      siloPreprocessingMultisegmented:
        condition: service_completed_successfully

  siloPreprocessingMultisegmented:
    image: ghcr.io/genspectrum/lapis-silo:${SILO_TAG}
    command: preprocessing
    volumes:
      - ../lapis-e2e/testData/multiSegmented:/preprocessing/input
      - ../lapis-e2e/testData/multiSegmented/output:/preprocessing/output
      - ../lapis-e2e/testData/multiSegmented/preprocessingConfig.yaml:/app/preprocessing_config.yaml
      - ../lapis-e2e/testData/multiSegmented/testDatabaseConfig.yaml:/preprocessing/input/database_config.yaml

  lapisMultiSegmented:
    image: ghcr.io/genspectrum/lapis:${LAPIS_TAG}
    ports:
      - "8094:8080"
    command: --silo.url=http://siloMultisegmented:8081
    volumes:
      - type: bind
        source: ../lapis-e2e/testData/multiSegmented/testDatabaseConfig.yaml
        target: /workspace/database_config.yaml
        read_only: true
      - type: bind
        source: ../lapis-e2e/testData/multiSegmented/reference_genomes.json
        target: /workspace/reference_genomes.json
        read_only: true

  lapisProtected:
    image: ghcr.io/genspectrum/lapis:${LAPIS_TAG}
    ports:
      - "8092:8080"
    command: --silo.url=http://silo:8081 --lapis.accessKeys.path=/workspace/access_keys.yaml
    volumes:
      - type: bind
        source: ../lapis-e2e/testData/singleSegmented/protectedTestDatabaseConfig.yaml
        target: /workspace/database_config.yaml
        read_only: true
      - type: bind
        source: ../lapis-e2e/testData/singleSegmented/reference_genomes.json
        target: /workspace/reference_genomes.json
        read_only: true
      - type: bind
        source: ./src/test/resources/config/testAccessKeys.yaml
        target: /workspace/access_keys.yaml