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UFA_Export_Word.m
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% AUTHOR : Gaoxing Zheng
% Institution: Zhongshan Hospital, Fudan University
% EMAIL CONTACT: [email protected]
% DATE: 2022-04-14
% Reference: https://blog.51cto.com/u_15127592/3286945
function UFA_Export_Word(InputFolder,OutputFolder,T2Flair_Image)
import mlreportgen.dom.*;
d=Document([OutputFolder,filesep,'U_fiber_intelligent_analysis_report'],'docx');
open(d);
%% Page Settings
s = d.CurrentDOCXSection;
s.PageSize.Orientation ='landscape'; % portrait(default)
s.PageSize.Height = '45cm';% '8.5in';
s.PageSize.Width = '27.94cm'; % '11in';
% s.PageMargins.Left = '3.0cm';
% s.PageMargins.Right = '3.0cm';
% s.PageMargins.Top = '2.5cm';
% s.PageMargins.Bottom = '2.5cm';
%
heiti=FontFamily;
heiti.FamilyName='Times New Roman';
heiti.EastAsiaFamilyName='Times New Roman';
ziti=FontFamily;
ziti.FamilyName='Times New Roman';
ziti.EastAsiaFamilyName='Times New Roman';
%% Title
p=Heading(1,'The multi-modal neuroimaging report');% the first title
%p.Color='red';
%p.HAlign='center';
p.Style={heiti,Color('black'),HAlign('center'),FontSize('24pt')};
append(d,p);
%% Easy table
append(d,Heading(2,'1. Basic Information'));
append(d,' ');
DICOM_Folder = dir(fullfile([InputFolder,filesep,['*',T2Flair_Image,'*']]));
DICOM_PATH = dir([DICOM_Folder(1).folder,filesep,DICOM_Folder(1).name]);
Subject_info = dicominfo([DICOM_PATH(3).folder,filesep,DICOM_PATH(3).name]);
t = {'Name','ID','Gender','Age';...
Subject_info.PatientName.FamilyName, Subject_info.PatientID, Subject_info.PatientSex, Subject_info.PatientAge(2:3);...
'Weight (kg)','Birth Date','Scan Time','Modality';...
Subject_info.PatientWeight, Subject_info.PatientBirthDate,Subject_info.AcquisitionDate,'DWI/T1/T2 Flair'};
p=Table(t);
% Format paragraphs in cells
for ii=1:p.NRows
for jj=1:p.NCols
t=entry(p,ii,jj);
t.Children(1).Style={ziti,...
Color('black'),... % green
FontSize('14pt'),...
LineSpacing(2.0),...
OuterMargin('0pt','0pt','0pt','0pt')};
end
end
p.Style = {Border('single','black','3px'), ...
ColSep('single','black','1px'), ... % blue
RowSep('single','black','1px')}; % blue
p.Width = '100%';
p.HAlign='center';% center align
p.TableEntriesHAlign='center';
p.TableEntriesVAlign='middle';
append(d,p);
append(d,' ');
%% WMH
append(d,Heading(2,'2. White matter hyper-intensities (WMH)'));
WMH_file_path = [OutputFolder,filesep,'WMH_extraction/subjects'];
UFA_WMHplot_lobe(WMH_file_path)
saveas(figure(1),'WMH_volume_Whole_PV_Deep.png');
saveas(figure(2),'WMH_size_Whole_PV.png');
saveas(figure(3),'WMH_volume_lobar.png');
saveas(figure(4),'WMH_counts_lobar.png');
saveas(figure(5),'WMH_volume_AT.png');
saveas(figure(6),'WMH_counts_AT.png');
saveas(figure(7),'WMH_size_AT.png');
saveas(figure(8),'WMH_size_lobar.png');
WMH_volume_Whole_PV_Deep = Image('WMH_volume_Whole_PV_Deep.png');
WMH_size_Whole_PV = Image('WMH_size_Whole_PV.png');
WMH_volume_lobar = Image('WMH_volume_lobar.png');
WMH_counts_lobar = Image('WMH_counts_lobar.png');
WMH_volume_AT = Image('WMH_volume_AT.png');
WMH_counts_AT = Image('WMH_counts_AT.png');
WMH_size_AT = Image('WMH_size_AT.png');
WMH_size_lobar = Image('WMH_size_lobar.png');
% WMH_counts.Style={HAlign('right'),Width('600px'),Height('400px')};
imgStyle1 = {HAlign('center'),Width('400px'),Height('300px')};
WMH_volume_Whole_PV_Deep.Style = imgStyle1;
WMH_size_Whole_PV.Style = imgStyle1;
WMH_volume_lobar.Style = imgStyle1;
WMH_counts_lobar.Style = imgStyle1;
WMH_volume_AT.Style = imgStyle1;
WMH_counts_AT.Style = imgStyle1;
imgStyle2 = {HAlign('center'),Width('700px'),Height('400px')};
WMH_size_AT.Style = imgStyle2;
WMH_size_lobar.Style = imgStyle2;
% WMH = Table({WMH_volume_lobar, WMH_counts_lobar, WMH_volume_AT, WMH_counts_AT,WMH_size_AT, WMH_size_lobar});
WMH1 = Table({WMH_volume_Whole_PV_Deep, WMH_size_Whole_PV});
WMH2 = Table({WMH_volume_lobar, WMH_counts_lobar});
WMH3 = Table({WMH_volume_AT, WMH_counts_AT});
WMH4 = Table({WMH_size_AT});
WMH5 = Table({WMH_size_lobar});
WMH1.Style = {ResizeToFitContents(false),Width('100%'),...
Border('solid','white','0px'),...
ColSep('solid','white','0px'),...
RowSep('solid','white','0px')};
WMH2.Style = {ResizeToFitContents(false),Width('100%'),...
Border('solid','white','0px'),...
ColSep('solid','white','0px'),...
RowSep('solid','white','0px')};
WMH3.Style = {ResizeToFitContents(false),Width('100%'),...
Border('solid','white','0px'),...
ColSep('solid','white','0px'),...
RowSep('solid','white','0px')};
WMH4.Style = {ResizeToFitContents(false),Width('100%'),...
Border('solid','white','0px'),...
ColSep('solid','white','0px'),...
RowSep('solid','white','0px')};
WMH5.Style = {ResizeToFitContents(false),Width('100%'),...
Border('solid','white','0px'),...
ColSep('solid','white','0px'),...
RowSep('solid','white','0px')};
append(d,' ');
append(d,WMH1);
append(d,' ');
append(d,WMH2);
append(d,' ');
append(d,WMH3);
append(d,' ');
append(d,WMH4);
append(d,' ');
append(d,WMH5);
append(d,' ');
close([figure(1) figure(2) figure(3) figure(4) figure(5) figure(6) figure(7) figure(8)])
%% U fiber quantification
append(d,Heading(2,'3. U fiber quantitation'));
minlen = 20;
maxlen = 80;
UFA_quantificaton(OutputFolder,minlen,maxlen);
saveas(figure(1),'U_fiber_counts.png');
saveas(figure(2),'U_fiber_length.png');
saveas(figure(3),'U_fiber_DTI.png');
U_fiber_counts = Image('U_fiber_counts.png');
U_fiber_length = Image('U_fiber_length.png');
U_fiber_DTI = Image('U_fiber_DTI.png');
imgStyle = {HAlign('center'),Width('400px'),Height(' 300px')};
U_fiber_counts.Style = imgStyle;
U_fiber_length.Style = imgStyle;
imgStyle3 = {HAlign('center'),Width('700px'),Height('400px')};
U_fiber_DTI.Style = imgStyle3;
U_fiber1 = Table({'Number of U fibers','Mean U fiber length';U_fiber_counts,U_fiber_length});
U_fiber1.Style = {ziti,ResizeToFitContents(false),Width('100%'),...
Border('solid','white','0px'),...
ColSep('solid','white','0px'),...
RowSep('solid','white','0px')};
U_fiber1.HAlign='center';% center align
U_fiber1.TableEntriesHAlign='center';
U_fiber1.TableEntriesVAlign='middle';
U_fiber2 = Table({'DTI metrics of U fibers';U_fiber_DTI});
U_fiber2.HAlign='center';% center align
U_fiber2.TableEntriesHAlign='center';
U_fiber2.TableEntriesVAlign='middle';
append(d,' ');
append(d,U_fiber1);
append(d,' ');
append(d,U_fiber2);
append(d,' ');
close([figure(1) figure(2) figure(3)])
%% Insert the figure
close(d);
rptview(d.OutputPath);
delete('WMH_volume_Whole_PV_Deep.png');
delete('WMH_size_Whole_PV.png');
delete('WMH_volume_lobar.png');
delete('WMH_counts_lobar.png');
delete('WMH_volume_AT.png');
delete('WMH_counts_AT.png');
delete('WMH_size_AT.png');
delete('WMH_size_lobar.png');
delete('U_fiber_counts.png');
delete('U_fiber_length.png');
delete('U_fiber_DTI.png');