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I do this for the ROOT, GSL and PYTHIA versions we are using at T2K. Currently, I find & replace a few lines in build_support.sh to achieve this.
Don't forget that it's a big difference whether the users install software (e.g. ROOT) with just "make" or if they follow it up with "make install"! I've found that my libraries can be in either $ROOTSYS/lib/root or $ROOTSYS/root/lib (or both), which is quite annoying. :)
Probably best to automatically check if software is already installed, and where. Maybe with "which root-config"?
Let the user supply required paths for packages (e.g., $ROOTSYS, etc.) so we can take advantage of pre-installed software when it is available!
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