From 7a692c738d226bfc0f5f5ba283ab5ceba999248b Mon Sep 17 00:00:00 2001 From: Jin wook Lee Date: Thu, 24 Feb 2022 14:12:19 -0800 Subject: [PATCH] fix conda ncurses issue --- scripts/install_conda_env.sh | 9 ++++++--- 1 file changed, 6 insertions(+), 3 deletions(-) diff --git a/scripts/install_conda_env.sh b/scripts/install_conda_env.sh index 12d7b5c..4ee88fa 100755 --- a/scripts/install_conda_env.sh +++ b/scripts/install_conda_env.sh @@ -14,9 +14,12 @@ conda create -n encode-chip-seq-pipeline-macs2 --file ${SH_SCRIPT_DIR}/requireme conda create -n encode-chip-seq-pipeline-spp --file ${SH_SCRIPT_DIR}/requirements.spp.txt \ --override-channels -c r -c bioconda -c defaults -y -# adhoc fix for https://github.com/ENCODE-DCC/chip-seq-pipeline2/issues/259 -# force-install readline 6.2 from conda-forge (ignoring dependencies) -conda install -n encode-chip-seq-pipeline-spp --no-deps --no-update-deps -y readline==6.2 -c conda-forge +# adhoc fix for the following issues: +# - https://github.com/ENCODE-DCC/chip-seq-pipeline2/issues/259 +# - https://github.com/ENCODE-DCC/chip-seq-pipeline2/issues/265 +# force-install readline 6.2, ncurses 5.9 from conda-forge (ignoring dependencies) +conda install -n encode-chip-seq-pipeline-spp --no-deps --no-update-deps -y \ + readline==6.2 ncurses==5.9 -c conda-forge echo "$(date): Done successfully."