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standardization of analysis package template Arachne <=> OHDSI #37

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sebastiaan101 opened this issue May 27, 2021 · 2 comments
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EHDEN workshop issue created during EHDEN workshop or discussion enhancement New feature or request question Further information is requested

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@sebastiaan101
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What would needed to work towards a standard template for the 'RunAnalysis.R' (or 'extras/CodeToRun.R' in OHDSI study packages)?

@sebastiaan101 sebastiaan101 added question Further information is requested EHDEN workshop issue created during EHDEN workshop or discussion labels May 27, 2021
@sebastiaan101
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Comment AS: "Thinking about the contents of the CodeToRun.R, it has a few major elements: connection details to the CDM, environment settings (i.e. where to write the results, Andromeda temp location) and then potentially site-specific study settings (i.e. censor results below a minimum cell count). After that, it would be great if all study packages had a consistent entry point function to further standardize the way in which studies are invoked."

@konstjar
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To discuss and clarify requirements

@konstjar konstjar added the enhancement New feature or request label May 31, 2021
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EHDEN workshop issue created during EHDEN workshop or discussion enhancement New feature or request question Further information is requested
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