config.yml

# Alter these configuration settings for usage with remote databases
connectionDetails:
  dbms: "sqlite"
  server: "data/MergedCohortDiagnosticsData.sqlite"
  user: ""
  password: ""
  port: ""

# Store connection details as a json string in keyring
# Store with keyring::key_set_with_value("KEYNAME", jsonlite::toJSON(myConnectionDetails))
connectionDetailsSecureKey: ~

# store connection details with environment variables
# Note - if dbms and port vars are unset in environment variables they will default to above connectionDetails settings
connectionEnvironmentVariables:
  dbms: ~
  database: ~
  server: ~
  user: ~
  password: ~
  port: ~
  extraSettings: ~

tablePrefix: ""
resultsDatabaseSchema: "main"
vocabularyDatabaseSchemas: ["main"]
cohortTableName: "cohort"
databaseTableName: "database"

enableAnnotation: TRUE
enableAuthorization: TRUE

### if you need a way to authorize users
### generate hash using code like digest::digest("diagnostics",algo = "sha512")
### store in external file called UserCredentials.csv - with fields userId, hashCode
### place the file in the root folder
userCredentialsFile: UserCredentials.csv