httomolibgpu_tests_run_iris.yml

name: httomolibgpu quick tests
on:
  push:
    branches:
      - main
  pull_request:
    branches:
      - main

jobs:
  iris-gpu:
    runs-on: iris-gpu
    container:
      image: ghcr.io/diamondlightsource/httomolibgpu:dockerfile
      env:
        NVIDIA_VISIBLE_DEVICES: ${{ env.NVIDIA_VISIBLE_DEVICES }}
      options: --gpus all --runtime=nvidia

    defaults:
      run:
        shell: bash -l {0}

    steps:
      - name: Checkout repository code
        uses: actions/checkout@v4

      - name: Create conda environment
        uses: mamba-org/setup-micromamba@v2
        with:
          environment-file: conda/environment.yml
          environment-name: httomo
          post-cleanup: 'all'
          init-shell: bash

      - name: Install httomolibgpu & coverage tools
        run: |
          pip install .[dev]
          pip install coverage
          micromamba list

      - name: Run tests with coverage
        run: |
          pytest --cov=./ tests/ --cov-report=xml:/home/runner/coverage.xml

      - name: Upload coverage to Codecov
        run: |
          pip install codecov-cli
          codecovcli -v upload-coverage --fail-on-error --file /home/runner/coverage.xml --name httomolibgpu-codecov
        env:
          CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}