diff --git a/.github/workflows/gh-pages.yml b/.github/workflows/gh-pages.yml
new file mode 100644
index 0000000..85108a0
--- /dev/null
+++ b/.github/workflows/gh-pages.yml
@@ -0,0 +1,29 @@
+name: deploy to gh pages
+
+on:
+  push:
+    branches:
+      - main
+  pull_request:
+
+jobs:
+  deploy:
+    runs-on: ubuntu-20.04
+    concurrency:
+      group: ${{ github.workflow }}-${{ github.ref }}
+    steps:
+      - uses: actions/checkout@v2
+
+      - name: Setup mdBook
+        uses: peaceiris/actions-mdbook@v2
+        with:
+          mdbook-version: 'latest'
+
+      - run: mdbook build
+
+      - name: Deploy
+        uses: peaceiris/actions-gh-pages@v3
+        if: ${{ github.ref == 'refs/heads/main' }}
+        with:
+          github_token: ${{ secrets.GITHUB_TOKEN }}
+          publish_dir: ./book
\ No newline at end of file
diff --git a/.gitignore b/.gitignore
new file mode 100644
index 0000000..97e002b
--- /dev/null
+++ b/.gitignore
@@ -0,0 +1,2 @@
+book
+target/
\ No newline at end of file
diff --git a/Cargo.lock b/Cargo.lock
new file mode 100644
index 0000000..5304ec5
--- /dev/null
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diff --git a/book.toml b/book.toml
new file mode 100644
index 0000000..a5cef83
--- /dev/null
+++ b/book.toml
@@ -0,0 +1,6 @@
+[book]
+authors = ["DavidsonGroup"]
+language = "en"
+multilingual = false
+src = "src"
+title = "nailpolish"
diff --git a/src/SUMMARY.md b/src/SUMMARY.md
new file mode 100644
index 0000000..a516381
--- /dev/null
+++ b/src/SUMMARY.md
@@ -0,0 +1,10 @@
+# nailpolish documentation
+
+[Introduction](./introduction.md)
+[Quick start](./quickstart.md)
+
+# Commands
+
+- [index](./index.md)
+
+# Reference
\ No newline at end of file
diff --git a/src/assets/consensus_diagram.png b/src/assets/consensus_diagram.png
new file mode 100644
index 0000000..95d2237
Binary files /dev/null and b/src/assets/consensus_diagram.png differ
diff --git a/src/index.md b/src/index.md
new file mode 100644
index 0000000..b743fda
--- /dev/null
+++ b/src/index.md
@@ -0,0 +1 @@
+# Chapter 1
diff --git a/src/install.md b/src/install.md
new file mode 100644
index 0000000..25267fe
--- /dev/null
+++ b/src/install.md
@@ -0,0 +1 @@
+# Installation
diff --git a/src/introduction.md b/src/introduction.md
index e69de29..29116fe 100644
--- a/src/introduction.md
+++ b/src/introduction.md
@@ -0,0 +1,12 @@
+Welcome to the nailpolish documentation.
+
+Nailpolish is a tool written in Rust for error correction of PCR duplicates,
+which occur when multiple reads have the same barcode and UMI.
+By quickly identifying these duplicates and performing a graph-based
+consensus algorithm, Nailpolish can replace these reads with a single
+consensus error-corrected read. This process can help to correct some of
+the sequencing errors naturally occurring in the reads.
+
+<img src="./assets/consensus_diagram.png" alt="consensus diagram" width="400"/>
+
+See the [Quick Start](./quickstart.md) for more information.
\ No newline at end of file
diff --git a/src/quickstart.md b/src/quickstart.md
new file mode 100644
index 0000000..101b05b
--- /dev/null
+++ b/src/quickstart.md
@@ -0,0 +1,16 @@
+# Quick Start
+
+This quick start guide will walk you through installing Nailpolish and running it on a small demo dataset.
+The demo dataset is a small subset of the _scmixology2_ Chromium 10x droplet-based dataset, sequenced using
+Nanopore technology, released by [Tian et al. (2021)](https://doi.org/10.1186/s13059-021-02525-6).
+
+Our Flexiplex tool is used to demultiplex the dataset.
+
+## Install
+
+For x64 Linux, run:
+
+```shell
+curl --proto '=https' --tlsv1.2 -LsSf "https://github.com/DavidsonGroup/nailpolish/releases/download/nightly_develop/nailpolish" -o nailpolish
+chmod +x nailpolish
+```