From 65b37af2d1b9f92f4972c4b45ebe258c48c2bdba Mon Sep 17 00:00:00 2001
From: Oliver Cheng <cheng.o@wehi.edu.au>
Date: Sat, 4 Jan 2025 11:09:05 +0800
Subject: [PATCH] Modify error messages slightly

---
 src/call.rs       | 4 +++-
 src/duplicates.rs | 4 ++++
 2 files changed, 7 insertions(+), 1 deletion(-)

diff --git a/src/call.rs b/src/call.rs
index 4e19083..72367d4 100644
--- a/src/call.rs
+++ b/src/call.rs
@@ -38,6 +38,8 @@ pub fn consensus(
     duplicates_only: bool,
     output_originals: bool,
 ) -> Result<()> {
+    info!("Creating thread pool with {threads} threads");
+
     rayon::ThreadPoolBuilder::new()
         .num_threads(threads)
         .build_global()?;
@@ -60,7 +62,7 @@ pub fn consensus(
             idx += 1;
 
             if (idx > 0) && (idx % 100000 == 0) {
-                eprintln!("Called {} reads...", idx);
+                info!("Called {} reads...", idx);
             }
 
             let single = group.records.len() == 1;
diff --git a/src/duplicates.rs b/src/duplicates.rs
index b160da7..11c74eb 100644
--- a/src/duplicates.rs
+++ b/src/duplicates.rs
@@ -147,6 +147,8 @@ impl IndexReader {
     ///
     /// This function will return an error if the file cannot be opened or read, or if the file format is incorrect.
     pub fn get_duplicates(&mut self) -> Result<(DuplicateMap, DuplicateStatistics)> {
+        info!("Reading index file...");
+
         let mut map = DuplicateMap::new();
 
         let mut stats = DuplicateStatistics {
@@ -199,6 +201,8 @@ impl IndexReader {
 
         stats.proportion_duplicate = stats.duplicate_reads as f64 / stats.total_reads as f64;
 
+        info!("Generated duplicate map from index file");
+
         Ok((map, stats))
     }
 }