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transcript IDs in count table #5

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nadiadavidson opened this issue Jan 6, 2025 · 0 comments
Open

transcript IDs in count table #5

nadiadavidson opened this issue Jan 6, 2025 · 0 comments

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@nadiadavidson
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Currently:
transcriptCount - An R data frame containing RNA-Seq transcript count. The first column must be named 'TranscriptID' storing string values of transcript identifiers, and the IDs must be compatible with what found in transcriptAnnotation. Other columns are considered numeric count across different biological samples.

I think the transcriptIDs should be taken from the rowname, and all the table columns assumed to be counts (numeric). ie. so the first column in the first sample.

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