From 0eac72cc568ae55f473ee0f8ca698e222a768924 Mon Sep 17 00:00:00 2001 From: Dani VM Date: Fri, 23 Aug 2024 16:42:44 +0200 Subject: [PATCH] dummy changes --- bu_isciii/templates/mag/ANALYSIS/lablog_mag_all | 2 +- bu_isciii/templates/mag/DOC/mag.config | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/bu_isciii/templates/mag/ANALYSIS/lablog_mag_all b/bu_isciii/templates/mag/ANALYSIS/lablog_mag_all index 68cd3b09f..a6e0982eb 100644 --- a/bu_isciii/templates/mag/ANALYSIS/lablog_mag_all +++ b/bu_isciii/templates/mag/ANALYSIS/lablog_mag_all @@ -2,4 +2,4 @@ mkdir 00-reads cd 00-reads; cat ../samples_id.txt | xargs -I % echo "ln -s ../../RAW/%_*R1*.fastq.gz %_R1.fastq.gz" | bash; cd - cd 00-reads; cat ../samples_id.txt | xargs -I % echo "ln -s ../../RAW/%_*R2*.fastq.gz %_R2.fastq.gz" | bash; cd - -mv ANALYSIS01_MAG_ALL $(date '+%Y%m%d')_ANALYSIS01_MAG_ALL \ No newline at end of file +mv ANALYSIS01_MAG_ALL $(date '+%Y%m%d')_ANALYSIS01_MAG_ALL diff --git a/bu_isciii/templates/mag/DOC/mag.config b/bu_isciii/templates/mag/DOC/mag.config index f6e3c8b2c..3a70811d8 100644 --- a/bu_isciii/templates/mag/DOC/mag.config +++ b/bu_isciii/templates/mag/DOC/mag.config @@ -18,7 +18,7 @@ process { withName:'SPADES|MEGAHIT' { errorStrategy = { task.exitStatus in [143,137,21,12,1] ? 'retry' : 'finish' } - maxRetries = 2 + maxRetries = 2 cpus = { 10 * task.attempt } memory = { 64.GB * task.attempt } time = { 24.h }