NEWS

CHANGES IN VERSION 1.0.1
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    o We changes semantics buffering down into buffered (mRNA up) and buffering up into buffered (mRNA down) - so the interpretation is more intuitive.
    o Add customization options to anota2seqPlotFC and anotat2seqPlotPvalues functions
    o Fixed a bug where an unitialized object "regModes" was being accessed causing an uninformative error message.
    
CHANGES IN VERSION 0.99.2
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    o renaming to adhere to Bioconductor naming style for classes, functions and data objects
    o correct mistake in man page of anota2seq_data
    o modify default values (no NULL default value for mandatory arguments)
    o fix a bug with argument fileName in the plot functions

CHANGES IN VERSION 0.99.1
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    o the latex2 function of BiocStyle is now deprecated in the devel version of the package. Replace it by latex()
    o remove inst/doc and build/ folders
    o update man pages
    o change default value of assayNum in anota2seqDataSetFromSE to 1
    o formatting of anota2seq show method (and minor text edits in the description of the object)
    o fixed issues related to sortBy parameter in anota2seqSelSigGenes
    o minor text edits in messages given to user
    o fixed bug regarding threshold lines in anota2seqPlotFC
    o fixed bug in anota2seqSelSigGenes when useRVM = FALSE and only one gene is to be selected


CHANGES IN VERSION 0.99.0
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    o First submitted version