build-all.yml

name: build-all

on:
  workflow_dispatch:

jobs:
  setup:
    name: build all modules and compile chaste build info

    strategy:
      fail-fast: false
      matrix:
        include:
          - os: ubuntu:24.04
            xsd_ver: 4.0.0
            xercesc_ver: 3.2.4
            sundials_ver: 6.4.1
            boost_ver: 1.83.0
            vtk_ver: 9.1.0
            petsc_ver: 3.19.2
            hdf5_ver: 1.10.10
            petsc_arch: linux-gnu

    runs-on: ubuntu-latest
    container:
      image: ${{ matrix.os }}

    steps:
      - name: checkout
        uses: actions/checkout@v4

      - id: set-env
        uses: ./.github/actions/set-env

      - name: setup defaults
        uses: ./.github/actions/setup-defaults

      - name: install and cache xsd module
        uses: ./.github/actions/setup-xsd
        with:
          xsd_ver: ${{ matrix.xsd_ver }}

      - name: build and cache xercesc module
        uses: ./.github/actions/setup-xercesc
        with:
          xercesc_ver: ${{ matrix.xercesc_ver }}

      - name: build and cache sundials module
        uses: ./.github/actions/setup-sundials
        with:
          sundials_ver: ${{ matrix.sundials_ver }}

      - name: build and cache boost module
        uses: ./.github/actions/setup-boost
        with:
          boost_ver: ${{ matrix.boost_ver }}

      - name: build and cache vtk module
        uses: ./.github/actions/setup-vtk
        with:
          vtk_ver: ${{ matrix.vtk_ver }}

      - name: build and cache petsc_hdf5 module
        uses: ./.github/actions/setup-petsc_hdf5
        with:
          petsc_ver: ${{ matrix.petsc_ver }}
          hdf5_ver: ${{ matrix.hdf5_ver }}
          petsc_arch: ${{ matrix.petsc_arch }}

      - name: checkout chaste
        uses: actions/checkout@v4
        with:
          repository: Chaste/Chaste
          path: Chaste
          submodules: recursive

      - name: make build and test directories
        run: |
          mkdir -p Chaste/build
          mkdir -p chaste-test-dir
          echo "CHASTE_TEST_OUTPUT=$(pwd)/chaste-test-dir" >> ${GITHUB_ENV}

      - name: compile chaste build info
        run: |
          module purge
          module use ${{ steps.set-env.outputs.modules_dir }}/modulefiles
          module load xsd/${{ matrix.xsd_ver }}
          module load xercesc/${{ matrix.xercesc_ver }}
          module load sundials/${{ matrix.sundials_ver }}
          module load boost/${{ matrix.boost_ver }}
          module load vtk/${{ matrix.vtk_ver }}
          module load petsc_hdf5/${{ matrix.petsc_ver }}_${{ matrix.hdf5_ver }}/${{ matrix.petsc_arch }}

          cmake -DCMAKE_BUILD_TYPE=Release ..
          cmake --build . --parallel $(nproc) --target TestChasteBuildInfo
          ctest -V -R TestChasteBuildInfo --output-on-failure | tee buildinfo
        working-directory: Chaste/build
        shell: bash --login -e -o pipefail {0} # login to source /etc/profile.d/modules.sh

      - name: verify dependency versions
        run: |
          sed -i.bak 's/"//g' buildinfo  # removes quotes from old sundials versions

          maj_min_rev='^[0-9]\+\.[0-9]\+\.[0-9]\+'
          maj_min='^[0-9]\+\.[0-9]\+'

          xsd_ver="$(echo ${{ matrix.xsd_ver }} | grep -o ${maj_min_rev})"
          xercesc_ver="$(echo ${{ matrix.xercesc_ver }} | grep -o ${maj_min_rev})"
          sundials_ver="$(echo ${{ matrix.sundials_ver }} | grep -o ${maj_min_rev})"
          boost_ver="$(echo ${{ matrix.boost_ver }} | grep -o ${maj_min_rev})"
          vtk_ver="$(echo ${{ matrix.vtk_ver }} | grep -o ${maj_min})"
          petsc_ver="$(echo ${{ matrix.petsc_ver }} | grep -o ${maj_min_rev})"
          hdf5_ver="$(echo ${{ matrix.hdf5_ver }} | grep -o ${maj_min_rev})"

          grep "<XSD>${xsd_ver}</XSD>" buildinfo
          grep "<Xerces>${xercesc_ver}</Xerces>" buildinfo
          grep "<SUNDIALS>${sundials_ver}</SUNDIALS>" buildinfo
          grep "<Boost>${boost_ver}</Boost>" buildinfo
          grep "<VTK>${vtk_ver}</VTK>" buildinfo
          grep "<PETSc>${petsc_ver}</PETSc>" buildinfo
          grep "<HDF5>${hdf5_ver}</HDF5>" buildinfo
        working-directory: Chaste/build
        shell: bash