The chaste_codegen_sbml module takes SBML models as input and uses libSBML to parse the models and output C++ code for Chaste.
Installation via pipx is recommended
pipx install git+https://github.com/Chaste/chaste-codegen-sbml@develop
Alternatively, install via pip (optionally in a virtual environment)
# Create and activate a virtual environment
python -m venv sbml-venv
# Install
pip install git+https://github.com/Chaste/chaste-codegen-sbml@develop
Clone the repository and install the package in editable mode along with the dev dependencies:
git clone https://github.com/Chaste/chaste-codegen-sbml
cd chaste-codegen-sbml
pip install -e .[dev]
chaste_codegen_sbml [-h]